Mutagenetix > Incidental Mutation

Incidental Mutation 'R0737:Zkscan3'

70535

Institutional Source

Beutler Lab

Gene Symbol

Zkscan3

Ensembl Gene

ENSMUSG00000021327

Gene Name

zinc finger with KRAB and SCAN domains 3

Synonyms

Zfp306, 2810435N07Rik, Zfp307, Skz1

MMRRC Submission

038918-MU

Accession Numbers

Genbank: NM_001145778, NM_023685; MGI: 1919989

Essential gene?

Probably non essential (E-score: 0.098) question?

Stock #

R0737 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

21387003-21402755 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 21388596 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 122 (T122A)

Ref Sequence

ENSEMBL: ENSMUSP00000153241 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000070785] [ENSMUST00000116433] [ENSMUST00000116434] [ENSMUST00000117721] [ENSMUST00000223831] [ENSMUST00000224820]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000070785
AA Change: T289A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000068424
Gene: ENSMUSG00000021327
AA Change: T289A

Domain	Start	End	E-Value	Type
SCAN	47	159	4.18e-71	SMART
KRAB	213	273	4.07e-6	SMART
ZnF_C2H2	313	335	4.17e-3	SMART
ZnF_C2H2	341	363	1.38e-3	SMART
ZnF_C2H2	369	391	9.88e-5	SMART
ZnF_C2H2	397	419	1.95e-3	SMART
ZnF_C2H2	425	447	3.95e-4	SMART
ZnF_C2H2	479	501	5.21e-4	SMART
ZnF_C2H2	507	529	1.2e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000116433

SMART Domains

Protein: ENSMUSP00000112134
Gene: ENSMUSG00000021327

Domain	Start	End	E-Value	Type
SCAN	47	159	4.18e-71	SMART
KRAB	213	273	1.12e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000116434
AA Change: T289A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000112135
Gene: ENSMUSG00000021327
AA Change: T289A

Domain	Start	End	E-Value	Type
SCAN	47	159	4.18e-71	SMART
KRAB	213	273	4.07e-6	SMART
ZnF_C2H2	313	335	4.17e-3	SMART
ZnF_C2H2	341	363	1.38e-3	SMART
ZnF_C2H2	369	391	9.88e-5	SMART
ZnF_C2H2	397	419	1.95e-3	SMART
ZnF_C2H2	425	447	3.95e-4	SMART
ZnF_C2H2	479	501	5.21e-4	SMART
ZnF_C2H2	507	529	1.2e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000117721

SMART Domains

Protein: ENSMUSP00000112862
Gene: ENSMUSG00000021327

Domain	Start	End	E-Value	Type
SCAN	47	159	4.18e-71	SMART
KRAB	213	256	3.96e-2	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145631

Predicted Effect

probably benign
Transcript: ENSMUST00000223831
AA Change: T122A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

Predicted Effect

probably benign
Transcript: ENSMUST00000224820

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.4%
20x: 94.8%

Validation Efficiency

Allele List at MGI

All alleles(5) : Gene trapped(5)

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930567H17Rik	T	A	X: 70,394,207		probably benign	Het
4932429P05Rik	A	G	X: 89,754,320	H586R	probably benign	Het
9130409I23Rik	G	A	1: 181,055,379	M235I	probably benign	Het
Aff4	T	A	11: 53,410,953	L1043*	probably null	Het
Ankrd11	G	T	8: 122,895,836	R426S	probably damaging	Het
Atm	T	A	9: 53,456,566	N2422I	probably damaging	Het
Bahcc1	C	A	11: 120,272,841	P655Q	probably damaging	Het
Baz2a	A	G	10: 128,116,080	I556V	possibly damaging	Het
BC017643	C	T	11: 121,227,242		probably null	Het
Ccdc33	T	C	9: 58,082,048	D114G	probably damaging	Het
Cdk5rap2	T	C	4: 70,337,375	H424R	probably benign	Het
Cfap57	T	C	4: 118,581,102	E864G	possibly damaging	Het
Cit	T	A	5: 115,946,919	S836R	probably damaging	Het
Clip4	C	T	17: 71,837,699	Q95*	probably null	Het
Col17a1	C	T	19: 47,669,433	G433S	possibly damaging	Het
Col6a3	A	G	1: 90,828,298	F90L	probably damaging	Het
Dnah9	T	C	11: 66,107,898	H1108R	probably damaging	Het
Elac1	A	T	18: 73,739,039	M295K	probably damaging	Het
Epas1	G	T	17: 86,829,456	G816C	possibly damaging	Het
Ermap	C	A	4: 119,178,510	C427F	probably damaging	Het
Fbxo44	T	C	4: 148,158,809		probably benign	Het
Fmo4	T	A	1: 162,808,392	K14*	probably null	Het
Gadl1	G	A	9: 116,073,987	M461I	probably damaging	Het
Garnl3	T	A	2: 32,990,642	I868F	probably damaging	Het
Gm6614	G	T	6: 142,003,428	A74E	possibly damaging	Het
Gm7168	A	G	17: 13,948,983	D204G	probably damaging	Het
Hs6st3	T	C	14: 119,869,383	F401S	possibly damaging	Het
Kcnmb1	A	T	11: 33,964,701	M1L	probably benign	Het
Krt35	T	C	11: 100,093,794	T292A	probably benign	Het
Krt81	C	A	15: 101,463,627	R24L	possibly damaging	Het
Lamb2	T	A	9: 108,483,794	W572R	probably benign	Het
Letmd1	A	G	15: 100,469,821	T87A	probably damaging	Het
Lrp2	A	G	2: 69,448,169	Y3947H	probably damaging	Het
Mocos	T	C	18: 24,688,987	F685L	probably damaging	Het
Nsun6	A	T	2: 14,996,474	F424I	probably damaging	Het
Nup88	A	G	11: 70,969,950	M1T	probably null	Het
Olfr1209	T	C	2: 88,910,273	N40S	probably damaging	Het
Olfr1339	C	T	4: 118,735,224	R232C	probably benign	Het
Olfr297	C	T	7: 86,526,987	P77S	probably damaging	Het
Pcdhb12	T	A	18: 37,437,709	V636D	probably damaging	Het
Pclo	C	A	5: 14,515,439	A73E	probably damaging	Het
Pdlim7	A	T	13: 55,504,880		probably null	Het
Phldb1	G	A	9: 44,699,636	P67S	possibly damaging	Het
Ppp2r2b	T	C	18: 43,059,192	T17A	probably benign	Het
Rab11fip4	T	C	11: 79,683,502	V241A	probably benign	Het
Slc41a1	T	C	1: 131,840,952	L216P	probably damaging	Het
Smg6	T	A	11: 75,159,836	D1352E	probably damaging	Het
Tbc1d9	A	T	8: 83,259,313	I816F	probably damaging	Het
Tex264	T	C	9: 106,659,299	T220A	probably benign	Het
Tmco6	G	A	18: 36,741,776	V439I	probably damaging	Het
Tmem64	A	G	4: 15,266,717	I256V	probably damaging	Het
Tnks1bp1	A	G	2: 85,052,536	S236G	possibly damaging	Het
Tsc1	A	G	2: 28,670,930	T267A	possibly damaging	Het
Txndc2	A	G	17: 65,639,553		probably null	Het
Vmn2r94	G	A	17: 18,277,433	Q26*	probably null	Het
Zan	T	C	5: 137,389,249	D4900G	unknown	Het

Other mutations in Zkscan3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01574:Zkscan3	APN	13	21394091	splice site	probably benign
IGL02406:Zkscan3	APN	13	21388178	missense	possibly damaging	0.71
IGL02725:Zkscan3	APN	13	21394893	missense	possibly damaging	0.85
IGL02741:Zkscan3	APN	13	21393994	missense	probably benign	0.05
3-1:Zkscan3	UTSW	13	21387881	missense	probably benign	0.32
R0040:Zkscan3	UTSW	13	21394920	splice site	probably null
R0040:Zkscan3	UTSW	13	21394920	splice site	probably null
R0133:Zkscan3	UTSW	13	21394774	missense	possibly damaging	0.73
R0660:Zkscan3	UTSW	13	21388460	missense	probably damaging	1.00
R1250:Zkscan3	UTSW	13	21388524	missense	probably benign	0.32
R1671:Zkscan3	UTSW	13	21396135	missense	possibly damaging	0.93
R1926:Zkscan3	UTSW	13	21396446	missense	possibly damaging	0.88
R2899:Zkscan3	UTSW	13	21393973	missense	probably damaging	1.00
R4119:Zkscan3	UTSW	13	21393949	missense	possibly damaging	0.65
R4120:Zkscan3	UTSW	13	21393949	missense	possibly damaging	0.65
R4606:Zkscan3	UTSW	13	21393783	missense	probably benign	0.00
R5459:Zkscan3	UTSW	13	21394812	missense	probably damaging	0.96
R5549:Zkscan3	UTSW	13	21394063	missense	probably damaging	1.00
R5631:Zkscan3	UTSW	13	21394533	missense	probably damaging	1.00
R5988:Zkscan3	UTSW	13	21396291	missense	probably damaging	1.00
R6495:Zkscan3	UTSW	13	21387905	missense	probably damaging	0.97
R7286:Zkscan3	UTSW	13	21394813	missense	probably benign
R7363:Zkscan3	UTSW	13	21387822	missense	probably damaging	0.99
R7443:Zkscan3	UTSW	13	21388438	nonsense	probably null
R7787:Zkscan3	UTSW	13	21387864	missense	possibly damaging	0.53
R9008:Zkscan3	UTSW	13	21388213	missense	possibly damaging	0.71
R9048:Zkscan3	UTSW	13	21396516	start codon destroyed	probably null	0.01
R9260:Zkscan3	UTSW	13	21394040	missense	probably damaging	0.98
R9281:Zkscan3	UTSW	13	21394875	missense	possibly damaging	0.96
R9300:Zkscan3	UTSW	13	21393497	missense	unknown
Z1088:Zkscan3	UTSW	13	21388565	missense	possibly damaging	0.53

Predicted Primers

PCR Primer
(F):5'- TCTCAGAAGATGTGAGCTACGCCTAA -3'
(R):5'- TCATCACAGTGTTCCTATGCAAAGCA -3'

Sequencing Primer
(F):5'- gccttaccacattcttcacac -3'
(R):5'- GTGTTCCTATGCAAAGCATAATTAAC -3'

Posted On

2013-09-30