Incidental Mutation 'R9310:Sbf2'
ID 705472
Institutional Source Beutler Lab
Gene Symbol Sbf2
Ensembl Gene ENSMUSG00000038371
Gene Name SET binding factor 2
Synonyms mMTMH1, 4833411B01Rik, Mtmr13, B430219L04Rik, SBF2
MMRRC Submission
Accession Numbers

Genbank: NM_177324; MGI: 1921831

Essential gene? Possibly non essential (E-score: 0.382) question?
Stock # R9310 (G1)
Quality Score 225.009
Status Not validated
Chromosome 7
Chromosomal Location 110308013-110614922 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) T to C at 110315085 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Glutamic Acid to Glycine at position 1630 (E1630G)
Ref Sequence ENSEMBL: ENSMUSP00000033058 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000033058] [ENSMUST00000164759] [ENSMUST00000166020]
AlphaFold E9PXF8
Predicted Effect possibly damaging
Transcript: ENSMUST00000033058
AA Change: E1630G

PolyPhen 2 Score 0.577 (Sensitivity: 0.88; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000033058
Gene: ENSMUSG00000038371
AA Change: E1630G

DomainStartEndE-ValueType
uDENN 1 87 2.27e-33 SMART
DENN 116 298 5.68e-75 SMART
dDENN 351 420 2e-20 SMART
Pfam:SBF2 530 752 3.3e-106 PFAM
GRAM 869 955 1.3e-12 SMART
low complexity region 1078 1089 N/A INTRINSIC
Pfam:Myotub-related 1091 1544 8.3e-86 PFAM
PH 1767 1872 3.05e-18 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000164759
AA Change: E1605G

PolyPhen 2 Score 0.816 (Sensitivity: 0.84; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000132072
Gene: ENSMUSG00000038371
AA Change: E1605G

DomainStartEndE-ValueType
uDENN 1 87 2.27e-33 SMART
DENN 116 298 5.68e-75 SMART
dDENN 351 420 2e-20 SMART
Pfam:SBF2 528 752 1.6e-107 PFAM
GRAM 869 955 1.3e-12 SMART
Pfam:Myotub-related 1089 1521 1.6e-98 PFAM
PH 1742 1847 3.05e-18 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000166020
AA Change: E1584G

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)
SMART Domains Protein: ENSMUSP00000126217
Gene: ENSMUSG00000038371
AA Change: E1584G

DomainStartEndE-ValueType
uDENN 1 75 9.26e-1 SMART
DENN 70 252 5.68e-75 SMART
dDENN 305 374 2e-20 SMART
Pfam:SBF2 482 706 1.6e-107 PFAM
GRAM 823 909 1.3e-12 SMART
Pfam:Myotub-related 1043 1500 5.9e-98 PFAM
PH 1721 1826 3.05e-18 SMART
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.7%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a pseudophosphatase and member of the myotubularin-related protein family. This gene maps within the CMT4B2 candidate region of chromosome 11p15 and mutations in this gene have been associated with Charcot-Marie-Tooth Disease, type 4B2. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for null alleles display progressive misfolding of myelin sheaths and abnormal nerve electrophysiology. [provided by MGI curators]
Allele List at MGI

All alleles(11) : Targeted, other(2) Gene trapped(9)

Other mutations in this stock
Total: 95 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700030J22Rik T C 8: 116,972,120 (GRCm38) I83V possibly damaging Het
Abcf1 G A 17: 35,961,729 (GRCm38) A288V probably null Het
Acer1 A T 17: 56,955,598 (GRCm38) V184D probably damaging Het
Apoh T C 11: 108,407,481 (GRCm38) probably null Het
Arid1a T C 4: 133,686,314 (GRCm38) Y959C unknown Het
Asb3 A T 11: 31,028,962 (GRCm38) H84L probably benign Het
Atxn1 A C 13: 45,568,018 (GRCm38) Y134D probably damaging Het
BC055324 A G 1: 163,964,520 (GRCm38) C610R probably damaging Het
Btbd1 T C 7: 81,829,237 (GRCm38) Y52C probably damaging Het
Cabp2 A G 19: 4,086,464 (GRCm38) D170G probably damaging Het
Cacna1a C A 8: 84,536,417 (GRCm38) A407E probably damaging Het
Cacna2d4 T A 6: 119,271,953 (GRCm38) probably null Het
Cc2d2a T C 5: 43,695,146 (GRCm38) F404S probably damaging Het
Cdh20 T C 1: 104,947,336 (GRCm38) M281T probably damaging Het
Cfap54 A T 10: 92,962,315 (GRCm38) M1694K unknown Het
Chd6 G T 2: 161,039,261 (GRCm38) T261K probably damaging Het
Cnksr1 T C 4: 134,229,019 (GRCm38) S585G probably damaging Het
Cntnap2 A T 6: 46,001,347 (GRCm38) Y312F probably damaging Het
Coa7 T A 4: 108,338,313 (GRCm38) Y146* probably null Het
Col28a1 T C 6: 8,175,414 (GRCm38) K145E unknown Het
Coq8b T A 7: 27,242,061 (GRCm38) I221N probably damaging Het
Cpd A T 11: 76,814,781 (GRCm38) L375* probably null Het
Dnah5 T C 15: 28,448,433 (GRCm38) F4214S probably damaging Het
Dock2 A G 11: 34,294,139 (GRCm38) F1067S possibly damaging Het
Dpp6 G A 5: 27,631,441 (GRCm38) A310T probably damaging Het
Dpp6 C A 5: 27,725,644 (GRCm38) L825I probably benign Het
Efcab5 A G 11: 77,113,705 (GRCm38) V929A probably benign Het
Ephx3 C G 17: 32,189,316 (GRCm38) D45H probably benign Het
Espl1 G A 15: 102,296,850 (GRCm38) probably null Het
Gm4847 T C 1: 166,632,712 (GRCm38) R402G probably benign Het
Grid1 T C 14: 35,026,805 (GRCm38) L194S probably damaging Het
Heatr1 A T 13: 12,438,610 (GRCm38) H2122L probably benign Het
Il17b T A 18: 61,692,263 (GRCm38) C123* probably null Het
Il17rc T C 6: 113,474,249 (GRCm38) L181P probably damaging Het
Inpp5e T A 2: 26,397,928 (GRCm38) I619L probably benign Het
Itgax C A 7: 128,142,260 (GRCm38) Y814* probably null Het
Marcks C T 10: 37,136,491 (GRCm38) E183K unknown Het
Mefv T C 16: 3,715,388 (GRCm38) T340A probably benign Het
Mical2 A G 7: 112,351,713 (GRCm38) K958R probably benign Het
Mkl2 T A 16: 13,401,090 (GRCm38) D533E probably benign Het
Mtor T A 4: 148,469,377 (GRCm38) L811Q probably benign Het
Myh4 A G 11: 67,254,744 (GRCm38) Y1351C probably damaging Het
Neb T C 2: 52,263,696 (GRCm38) M2406V probably benign Het
Nebl T C 2: 17,348,867 (GRCm38) T214A probably benign Het
Nlrx1 A T 9: 44,253,408 (GRCm38) I913N probably damaging Het
Npr2 G T 4: 43,632,404 (GRCm38) A74S probably benign Het
Olfr1220 T A 2: 89,097,913 (GRCm38) S5C probably damaging Het
Olfr711 C A 7: 106,971,471 (GRCm38) C291F probably damaging Het
Olfr794 T A 10: 129,570,818 (GRCm38) N54K probably benign Het
Pard3b G T 1: 62,166,369 (GRCm38) V441F probably damaging Het
Pcsk1 G A 13: 75,090,072 (GRCm38) R4K probably benign Het
Pisd G T 5: 32,737,440 (GRCm38) N337K possibly damaging Het
Pml T C 9: 58,249,662 (GRCm38) K10R probably benign Het
Prkci T C 3: 31,029,515 (GRCm38) W132R probably damaging Het
Prrc2a A T 17: 35,155,999 (GRCm38) M1225K probably benign Het
Prss23 T C 7: 89,509,934 (GRCm38) D309G probably damaging Het
Pxdn G A 12: 30,002,052 (GRCm38) G743S probably damaging Het
Rab29 A T 1: 131,872,122 (GRCm38) E145V probably damaging Het
Rasef C T 4: 73,735,719 (GRCm38) probably null Het
Rcbtb1 T G 14: 59,235,250 (GRCm38) I496S probably benign Het
Rcor1 T C 12: 111,099,959 (GRCm38) Y228H Het
Reep5 C T 18: 34,357,169 (GRCm38) V92I probably damaging Het
Rfx3 T C 19: 27,849,929 (GRCm38) S86G probably benign Het
Rptn T A 3: 93,397,077 (GRCm38) D572E probably benign Het
Rsl1 A T 13: 67,176,446 (GRCm38) probably null Het
Sele G A 1: 164,049,406 (GRCm38) V84I probably benign Het
Serpina1b T C 12: 103,732,497 (GRCm38) D31G probably benign Het
Serpina3c T C 12: 104,149,554 (GRCm38) I244V probably benign Het
Serpinb6e A G 13: 33,833,221 (GRCm38) V272A probably benign Het
Serpinb9b A G 13: 33,035,540 (GRCm38) D150G probably benign Het
Sgpp1 T C 12: 75,722,600 (GRCm38) T265A probably benign Het
Slc9a1 T A 4: 133,416,370 (GRCm38) M389K probably damaging Het
Slco3a1 A T 7: 74,554,488 (GRCm38) C35S probably damaging Het
Slco6d1 T A 1: 98,499,894 (GRCm38) V650E possibly damaging Het
Slit2 T C 5: 48,192,226 (GRCm38) V274A possibly damaging Het
Snd1 A G 6: 28,795,937 (GRCm38) E593G probably null Het
Spata2l C T 8: 123,234,134 (GRCm38) V139M probably benign Het
Suco T C 1: 161,856,858 (GRCm38) K231R probably damaging Het
Tenm3 C A 8: 48,555,900 (GRCm38) probably benign Het
Tg T C 15: 66,827,269 (GRCm38) S2415P possibly damaging Het
Traf6 C A 2: 101,696,727 (GRCm38) A274D possibly damaging Het
Usp14 A G 18: 9,996,239 (GRCm38) I447T possibly damaging Het
Usp32 G A 11: 85,051,202 (GRCm38) L355F probably benign Het
Vcpip1 T C 1: 9,747,702 (GRCm38) N152S possibly damaging Het
Vgf A G 5: 137,032,256 (GRCm38) Q424R probably benign Het
Vmn2r84 A T 10: 130,392,124 (GRCm38) M81K possibly damaging Het
Washc5 G A 15: 59,346,218 (GRCm38) A732V possibly damaging Het
Wdr63 C T 3: 146,097,140 (GRCm38) probably null Het
Xrcc3 T G 12: 111,805,051 (GRCm38) D213A probably damaging Het
Zeb2 T C 2: 44,996,976 (GRCm38) T690A probably benign Het
Zfat G A 15: 68,084,401 (GRCm38) S1212L probably damaging Het
Zfp623 C T 15: 75,948,100 (GRCm38) L302F probably damaging Het
Zfp799 A C 17: 32,820,759 (GRCm38) C178G possibly damaging Het
Zfy1 T C Y: 727,634 (GRCm38) E348G unknown Het
Zhx3 A G 2: 160,779,473 (GRCm38) W925R possibly damaging Het
Other mutations in Sbf2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00421:Sbf2 APN 7 110,375,832 (GRCm38) splice site probably benign
IGL01089:Sbf2 APN 7 110,348,962 (GRCm38) missense probably damaging 1.00
IGL01144:Sbf2 APN 7 110,329,903 (GRCm38) missense probably damaging 1.00
IGL01652:Sbf2 APN 7 110,447,120 (GRCm38) missense probably damaging 1.00
IGL01950:Sbf2 APN 7 110,365,825 (GRCm38) missense probably benign 0.00
IGL02027:Sbf2 APN 7 110,461,141 (GRCm38) missense probably damaging 1.00
IGL02244:Sbf2 APN 7 110,560,295 (GRCm38) missense probably damaging 1.00
IGL02376:Sbf2 APN 7 110,462,956 (GRCm38) missense probably damaging 0.99
IGL03405:Sbf2 APN 7 110,462,932 (GRCm38) missense probably damaging 0.98
N/A - 535:Sbf2 UTSW 7 110,312,752 (GRCm38) missense probably benign
R0084:Sbf2 UTSW 7 110,442,366 (GRCm38) missense possibly damaging 0.95
R0092:Sbf2 UTSW 7 110,320,806 (GRCm38) splice site probably benign
R0121:Sbf2 UTSW 7 110,489,219 (GRCm38) critical splice donor site probably null
R0464:Sbf2 UTSW 7 110,464,576 (GRCm38) splice site probably benign
R0505:Sbf2 UTSW 7 110,399,343 (GRCm38) missense probably damaging 1.00
R0531:Sbf2 UTSW 7 110,367,323 (GRCm38) splice site probably benign
R0554:Sbf2 UTSW 7 110,428,287 (GRCm38) missense probably damaging 1.00
R0617:Sbf2 UTSW 7 110,330,683 (GRCm38) frame shift probably null
R0619:Sbf2 UTSW 7 110,310,262 (GRCm38) missense possibly damaging 0.87
R0799:Sbf2 UTSW 7 110,341,355 (GRCm38) missense possibly damaging 0.58
R0898:Sbf2 UTSW 7 110,371,652 (GRCm38) missense possibly damaging 0.59
R1077:Sbf2 UTSW 7 110,367,172 (GRCm38) splice site probably benign
R1167:Sbf2 UTSW 7 110,364,549 (GRCm38) missense probably damaging 1.00
R1169:Sbf2 UTSW 7 110,310,184 (GRCm38) missense probably benign 0.04
R1424:Sbf2 UTSW 7 110,315,026 (GRCm38) missense probably damaging 1.00
R1536:Sbf2 UTSW 7 110,378,043 (GRCm38) missense probably damaging 1.00
R1558:Sbf2 UTSW 7 110,428,346 (GRCm38) missense probably damaging 1.00
R1601:Sbf2 UTSW 7 110,340,076 (GRCm38) critical splice acceptor site probably null
R1762:Sbf2 UTSW 7 110,312,758 (GRCm38) missense probably benign
R1771:Sbf2 UTSW 7 110,461,146 (GRCm38) nonsense probably null
R1989:Sbf2 UTSW 7 110,348,923 (GRCm38) missense possibly damaging 0.94
R2109:Sbf2 UTSW 7 110,461,212 (GRCm38) missense probably damaging 1.00
R2126:Sbf2 UTSW 7 110,560,295 (GRCm38) missense probably damaging 1.00
R2444:Sbf2 UTSW 7 110,330,698 (GRCm38) missense probably benign 0.31
R3765:Sbf2 UTSW 7 110,375,581 (GRCm38) missense probably damaging 1.00
R3808:Sbf2 UTSW 7 110,489,280 (GRCm38) makesense probably null
R3895:Sbf2 UTSW 7 110,447,091 (GRCm38) missense probably damaging 0.99
R3978:Sbf2 UTSW 7 110,329,885 (GRCm38) missense probably benign 0.00
R4056:Sbf2 UTSW 7 110,441,466 (GRCm38) missense probably damaging 0.99
R4057:Sbf2 UTSW 7 110,441,466 (GRCm38) missense probably damaging 0.99
R4111:Sbf2 UTSW 7 110,428,242 (GRCm38) missense probably damaging 1.00
R4569:Sbf2 UTSW 7 110,348,853 (GRCm38) critical splice donor site probably null
R4670:Sbf2 UTSW 7 110,335,399 (GRCm38) missense probably damaging 1.00
R4763:Sbf2 UTSW 7 110,420,917 (GRCm38) missense probably damaging 1.00
R4792:Sbf2 UTSW 7 110,351,610 (GRCm38) missense probably damaging 0.98
R4811:Sbf2 UTSW 7 110,372,535 (GRCm38) missense probably damaging 1.00
R4822:Sbf2 UTSW 7 110,377,939 (GRCm38) intron probably benign
R5110:Sbf2 UTSW 7 110,364,657 (GRCm38) missense probably benign 0.10
R5143:Sbf2 UTSW 7 110,422,540 (GRCm38) nonsense probably null
R5443:Sbf2 UTSW 7 110,377,928 (GRCm38) intron probably benign
R5457:Sbf2 UTSW 7 110,312,830 (GRCm38) missense probably benign
R5641:Sbf2 UTSW 7 110,438,901 (GRCm38) missense probably damaging 1.00
R5915:Sbf2 UTSW 7 110,378,096 (GRCm38) nonsense probably null
R5948:Sbf2 UTSW 7 110,489,285 (GRCm38) missense probably damaging 1.00
R5977:Sbf2 UTSW 7 110,377,986 (GRCm38) missense probably benign 0.00
R6052:Sbf2 UTSW 7 110,441,534 (GRCm38) missense probably damaging 1.00
R6142:Sbf2 UTSW 7 110,348,975 (GRCm38) missense probably damaging 1.00
R6327:Sbf2 UTSW 7 110,441,552 (GRCm38) missense probably damaging 1.00
R6356:Sbf2 UTSW 7 110,372,623 (GRCm38) missense probably damaging 1.00
R6450:Sbf2 UTSW 7 110,462,863 (GRCm38) missense probably damaging 1.00
R6587:Sbf2 UTSW 7 110,440,975 (GRCm38) missense probably damaging 1.00
R6696:Sbf2 UTSW 7 110,560,298 (GRCm38) missense probably benign 0.04
R6986:Sbf2 UTSW 7 110,330,615 (GRCm38) missense probably damaging 0.99
R7147:Sbf2 UTSW 7 110,447,061 (GRCm38) missense probably benign 0.01
R7358:Sbf2 UTSW 7 110,399,348 (GRCm38) missense possibly damaging 0.95
R7414:Sbf2 UTSW 7 110,314,064 (GRCm38) missense possibly damaging 0.89
R7418:Sbf2 UTSW 7 110,365,821 (GRCm38) missense probably damaging 1.00
R7423:Sbf2 UTSW 7 110,438,848 (GRCm38) missense possibly damaging 0.48
R7425:Sbf2 UTSW 7 110,375,777 (GRCm38) nonsense probably null
R7431:Sbf2 UTSW 7 110,351,750 (GRCm38) missense probably damaging 1.00
R7497:Sbf2 UTSW 7 110,614,716 (GRCm38) nonsense probably null
R7556:Sbf2 UTSW 7 110,314,053 (GRCm38) missense probably benign 0.20
R7604:Sbf2 UTSW 7 110,378,067 (GRCm38) missense possibly damaging 0.95
R7707:Sbf2 UTSW 7 110,330,713 (GRCm38) critical splice acceptor site probably null
R7746:Sbf2 UTSW 7 110,441,426 (GRCm38) missense probably benign 0.01
R7812:Sbf2 UTSW 7 110,449,963 (GRCm38) missense possibly damaging 0.84
R7849:Sbf2 UTSW 7 110,372,510 (GRCm38) missense probably damaging 1.00
R8026:Sbf2 UTSW 7 110,335,387 (GRCm38) missense probably damaging 1.00
R8048:Sbf2 UTSW 7 110,315,082 (GRCm38) missense probably benign 0.21
R8305:Sbf2 UTSW 7 110,371,618 (GRCm38) missense possibly damaging 0.79
R8337:Sbf2 UTSW 7 110,441,462 (GRCm38) missense probably benign
R8773:Sbf2 UTSW 7 110,348,995 (GRCm38) missense probably benign
R8786:Sbf2 UTSW 7 110,464,586 (GRCm38) critical splice donor site probably null
R8812:Sbf2 UTSW 7 110,329,862 (GRCm38) missense probably damaging 1.00
R8876:Sbf2 UTSW 7 110,449,939 (GRCm38) missense probably damaging 0.99
R8932:Sbf2 UTSW 7 110,440,948 (GRCm38) critical splice donor site probably null
R8954:Sbf2 UTSW 7 110,438,911 (GRCm38) nonsense probably null
R8991:Sbf2 UTSW 7 110,312,689 (GRCm38) missense probably benign 0.20
R9119:Sbf2 UTSW 7 110,312,085 (GRCm38) missense possibly damaging 0.93
R9344:Sbf2 UTSW 7 110,341,328 (GRCm38) missense probably benign 0.10
R9346:Sbf2 UTSW 7 110,320,739 (GRCm38) missense probably benign 0.05
R9404:Sbf2 UTSW 7 110,441,495 (GRCm38) missense possibly damaging 0.81
R9406:Sbf2 UTSW 7 110,441,495 (GRCm38) missense possibly damaging 0.81
R9408:Sbf2 UTSW 7 110,441,495 (GRCm38) missense possibly damaging 0.81
R9472:Sbf2 UTSW 7 110,371,591 (GRCm38) missense possibly damaging 0.88
R9554:Sbf2 UTSW 7 110,441,464 (GRCm38) missense probably damaging 1.00
R9562:Sbf2 UTSW 7 110,441,495 (GRCm38) missense possibly damaging 0.81
R9624:Sbf2 UTSW 7 110,364,650 (GRCm38) missense probably damaging 1.00
R9652:Sbf2 UTSW 7 110,441,495 (GRCm38) missense possibly damaging 0.81
R9653:Sbf2 UTSW 7 110,441,495 (GRCm38) missense possibly damaging 0.81
R9709:Sbf2 UTSW 7 110,428,307 (GRCm38) missense probably damaging 0.99
RF005:Sbf2 UTSW 7 110,317,008 (GRCm38) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AAGGGAGCCATTACAGATGC -3'
(R):5'- GGGTTGCCTAGTAGTGAGTACC -3'

Sequencing Primer
(F):5'- CGCAAGTTAGTCCAAGCTGC -3'
(R):5'- GTTGCCTAGTAGTGAGTACCAAGTAC -3'
Posted On 2022-03-25