Incidental Mutation 'R9317:Apcdd1'
| ID |
705932 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Apcdd1
|
| Ensembl Gene |
ENSMUSG00000071847 |
| Gene Name |
adenomatosis polyposis coli down-regulated 1 |
| Synonyms |
Drapc1, EIG180 |
| MMRRC Submission |
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.135)
|
| Stock # |
R9317 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
18 |
| Chromosomal Location |
62922327-62953195 bp(+) (GRCm38) |
| Type of Mutation |
start gained |
| DNA Base Change (assembly) |
C to T
at 62922660 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000125868
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000096554]
[ENSMUST00000163716]
|
| AlphaFold |
Q3U128 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000096554
|
| SMART Domains |
Protein: ENSMUSP00000094302
Gene: ENSMUSG00000071847
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
26 |
N/A |
INTRINSIC |
|
APCDDC
|
51 |
283 |
3.3e-140 |
SMART |
|
APCDDC
|
284 |
500 |
6.26e-91 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000163716
|
| SMART Domains |
Protein: ENSMUSP00000125868
Gene: ENSMUSG00000071847
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
26 |
N/A |
INTRINSIC |
|
APCDDC
|
51 |
283 |
3.3e-140 |
SMART |
|
APCDDC
|
284 |
500 |
6.26e-91 |
SMART |
|
| Meta Mutation Damage Score |
0.0846 |
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.7%
- 20x: 99.1%
|
| Validation Efficiency |
100% (37/37) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This locus encodes an inhibitor of the Wnt signaling pathway. Mutations at this locus have been associated with hereditary hypotrichosis simplex. Increased expression of this gene may also be associated with colorectal carcinogenesis.[provided by RefSeq, Sep 2010]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 36 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adad2 |
T |
C |
8: 119,615,441 (GRCm38) |
L307P |
probably damaging |
Het |
| C130060K24Rik |
A |
C |
6: 65,447,384 (GRCm38) |
I174L |
probably benign |
Het |
| C1qbp |
T |
C |
11: 70,978,103 (GRCm38) |
N278D |
probably benign |
Het |
| Cd68 |
C |
T |
11: 69,665,034 (GRCm38) |
|
probably null |
Het |
| Cdc37l1 |
T |
G |
19: 28,995,118 (GRCm38) |
N70K |
probably damaging |
Het |
| Cyp3a57 |
T |
C |
5: 145,372,611 (GRCm38) |
V253A |
possibly damaging |
Het |
| Dnmt1 |
A |
G |
9: 20,918,279 (GRCm38) |
F795S |
probably damaging |
Het |
| Gli3 |
T |
A |
13: 15,715,073 (GRCm38) |
S591T |
probably damaging |
Het |
| Gmeb1 |
A |
T |
4: 132,226,038 (GRCm38) |
S472R |
probably benign |
Het |
| Gpr158 |
T |
C |
2: 21,827,226 (GRCm38) |
S1046P |
probably benign |
Het |
| Grik5 |
A |
G |
7: 25,046,235 (GRCm38) |
L471P |
probably damaging |
Het |
| Hmcn2 |
G |
A |
2: 31,460,316 (GRCm38) |
R5075H |
possibly damaging |
Het |
| Hspa5 |
G |
T |
2: 34,776,058 (GRCm38) |
S638I |
probably benign |
Het |
| Ilf3 |
A |
G |
9: 21,396,126 (GRCm38) |
Y355C |
probably damaging |
Het |
| Kalrn |
T |
C |
16: 34,013,675 (GRCm38) |
T2366A |
|
Het |
| Negr1 |
T |
A |
3: 157,198,444 (GRCm38) |
C315S |
probably benign |
Het |
| Olfr136 |
A |
T |
17: 38,335,429 (GRCm38) |
T91S |
possibly damaging |
Het |
| Olfr917 |
T |
A |
9: 38,665,359 (GRCm38) |
M162L |
probably benign |
Het |
| Prr5 |
C |
T |
15: 84,699,123 (GRCm38) |
Q110* |
probably null |
Het |
| Prune2 |
T |
A |
19: 17,121,670 (GRCm38) |
S1513T |
probably benign |
Het |
| Ptprk |
A |
G |
10: 28,354,735 (GRCm38) |
E274G |
probably damaging |
Het |
| Rmdn3 |
G |
A |
2: 119,156,510 (GRCm38) |
A12V |
unknown |
Het |
| Rpf1 |
A |
G |
3: 146,512,261 (GRCm38) |
V166A |
probably benign |
Het |
| Senp5 |
A |
C |
16: 31,983,572 (GRCm38) |
F554C |
probably damaging |
Het |
| Smarca2 |
T |
C |
19: 26,759,879 (GRCm38) |
C65R |
possibly damaging |
Het |
| Sprr2j-ps |
T |
A |
3: 92,418,871 (GRCm38) |
C18S |
unknown |
Het |
| Sult2a6 |
A |
T |
7: 14,236,690 (GRCm38) |
Y160* |
probably null |
Het |
| Taar8a |
T |
C |
10: 24,076,855 (GRCm38) |
V119A |
probably benign |
Het |
| Tmtc3 |
T |
C |
10: 100,466,034 (GRCm38) |
K351R |
probably benign |
Het |
| Trpc1 |
A |
G |
9: 95,721,222 (GRCm38) |
L419P |
probably damaging |
Het |
| Ttn |
T |
C |
2: 76,811,355 (GRCm38) |
K13466E |
possibly damaging |
Het |
| Unc13c |
A |
G |
9: 73,540,380 (GRCm38) |
F1846S |
possibly damaging |
Het |
| Usp48 |
G |
A |
4: 137,613,685 (GRCm38) |
G332E |
probably benign |
Het |
| Vmn2r72 |
A |
T |
7: 85,754,814 (GRCm38) |
N56K |
probably benign |
Het |
| Wdr12 |
C |
A |
1: 60,089,296 (GRCm38) |
M98I |
probably benign |
Het |
| Zfp953 |
T |
C |
13: 67,343,393 (GRCm38) |
Y165C |
possibly damaging |
Het |
|
| Other mutations in Apcdd1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00805:Apcdd1
|
APN |
18 |
62,933,865 (GRCm38) |
splice site |
probably benign |
|
|
IGL01522:Apcdd1
|
APN |
18 |
62,952,115 (GRCm38) |
missense |
possibly damaging |
0.50 |
|
IGL01637:Apcdd1
|
APN |
18 |
62,937,286 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02069:Apcdd1
|
APN |
18 |
62,949,983 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02183:Apcdd1
|
APN |
18 |
62,951,854 (GRCm38) |
missense |
probably damaging |
0.98 |
|
IGL02268:Apcdd1
|
APN |
18 |
62,950,188 (GRCm38) |
missense |
probably damaging |
0.99 |
|
IGL02664:Apcdd1
|
APN |
18 |
62,951,820 (GRCm38) |
splice site |
probably benign |
|
|
R0207:Apcdd1
|
UTSW |
18 |
62,950,079 (GRCm38) |
missense |
probably benign |
0.04 |
|
R0363:Apcdd1
|
UTSW |
18 |
62,937,097 (GRCm38) |
missense |
possibly damaging |
0.46 |
|
R0540:Apcdd1
|
UTSW |
18 |
62,951,896 (GRCm38) |
missense |
possibly damaging |
0.82 |
|
R0567:Apcdd1
|
UTSW |
18 |
62,934,036 (GRCm38) |
missense |
possibly damaging |
0.93 |
|
R0607:Apcdd1
|
UTSW |
18 |
62,951,896 (GRCm38) |
missense |
possibly damaging |
0.82 |
|
R0629:Apcdd1
|
UTSW |
18 |
62,933,970 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1118:Apcdd1
|
UTSW |
18 |
62,952,024 (GRCm38) |
missense |
probably benign |
|
|
R1178:Apcdd1
|
UTSW |
18 |
62,937,097 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1180:Apcdd1
|
UTSW |
18 |
62,937,097 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1181:Apcdd1
|
UTSW |
18 |
62,937,097 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4363:Apcdd1
|
UTSW |
18 |
62,951,932 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R5534:Apcdd1
|
UTSW |
18 |
62,937,034 (GRCm38) |
missense |
probably benign |
0.01 |
|
R5622:Apcdd1
|
UTSW |
18 |
62,936,902 (GRCm38) |
splice site |
probably null |
|
|
R5771:Apcdd1
|
UTSW |
18 |
62,936,956 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5852:Apcdd1
|
UTSW |
18 |
62,937,063 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5934:Apcdd1
|
UTSW |
18 |
62,951,869 (GRCm38) |
missense |
possibly damaging |
0.72 |
|
R6109:Apcdd1
|
UTSW |
18 |
62,937,366 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6515:Apcdd1
|
UTSW |
18 |
62,951,839 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6625:Apcdd1
|
UTSW |
18 |
62,951,858 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6831:Apcdd1
|
UTSW |
18 |
62,950,126 (GRCm38) |
nonsense |
probably null |
|
|
R6931:Apcdd1
|
UTSW |
18 |
62,933,908 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7018:Apcdd1
|
UTSW |
18 |
62,937,049 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R7115:Apcdd1
|
UTSW |
18 |
62,936,953 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7148:Apcdd1
|
UTSW |
18 |
62,951,845 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7326:Apcdd1
|
UTSW |
18 |
62,952,188 (GRCm38) |
nonsense |
probably null |
|
|
R8025:Apcdd1
|
UTSW |
18 |
62,936,908 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8114:Apcdd1
|
UTSW |
18 |
62,950,056 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8261:Apcdd1
|
UTSW |
18 |
62,933,903 (GRCm38) |
missense |
possibly damaging |
0.86 |
|
R8404:Apcdd1
|
UTSW |
18 |
62,933,915 (GRCm38) |
missense |
possibly damaging |
0.66 |
|
R9015:Apcdd1
|
UTSW |
18 |
62,950,086 (GRCm38) |
missense |
possibly damaging |
0.93 |
|
R9040:Apcdd1
|
UTSW |
18 |
62,937,343 (GRCm38) |
missense |
probably damaging |
0.96 |
|
R9288:Apcdd1
|
UTSW |
18 |
62,922,660 (GRCm38) |
start gained |
probably benign |
|
|
R9295:Apcdd1
|
UTSW |
18 |
62,922,660 (GRCm38) |
start gained |
probably benign |
|
|
R9297:Apcdd1
|
UTSW |
18 |
62,922,660 (GRCm38) |
start gained |
probably benign |
|
|
R9319:Apcdd1
|
UTSW |
18 |
62,922,660 (GRCm38) |
start gained |
probably benign |
|
|
R9393:Apcdd1
|
UTSW |
18 |
62,922,660 (GRCm38) |
start gained |
probably benign |
|
|
R9394:Apcdd1
|
UTSW |
18 |
62,922,660 (GRCm38) |
start gained |
probably benign |
|
|
R9396:Apcdd1
|
UTSW |
18 |
62,922,660 (GRCm38) |
start gained |
probably benign |
|
|
R9397:Apcdd1
|
UTSW |
18 |
62,922,660 (GRCm38) |
start gained |
probably benign |
|
|
R9480:Apcdd1
|
UTSW |
18 |
62,922,660 (GRCm38) |
start gained |
probably benign |
|
|
R9520:Apcdd1
|
UTSW |
18 |
62,950,119 (GRCm38) |
missense |
possibly damaging |
0.85 |
|
R9521:Apcdd1
|
UTSW |
18 |
62,922,660 (GRCm38) |
start gained |
probably benign |
|
|
R9599:Apcdd1
|
UTSW |
18 |
62,950,198 (GRCm38) |
critical splice donor site |
probably null |
|
|
X0028:Apcdd1
|
UTSW |
18 |
62,937,130 (GRCm38) |
missense |
possibly damaging |
0.59 |
|
Z1088:Apcdd1
|
UTSW |
18 |
62,937,183 (GRCm38) |
missense |
probably benign |
0.18 |
|
Z1177:Apcdd1
|
UTSW |
18 |
62,922,691 (GRCm38) |
nonsense |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- ACTGTACCTCTGAGCTGTGC -3'
(R):5'- GAGGTTCGCATCCTTCCAGAAAG -3'
Sequencing Primer
(F):5'- TCTGAGCTGTGCACGCC -3'
(R):5'- AAAACCACTGCGGGTGC -3'
|
| Posted On |
2022-03-25 |
Incidental Mutation