Incidental Mutation 'R9332:Vmn2r6'
ID |
706901 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn2r6
|
Ensembl Gene |
ENSMUSG00000090581 |
Gene Name |
vomeronasal 2, receptor 6 |
Synonyms |
EG667069, EG620718 |
MMRRC Submission |
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.198)
|
Stock # |
R9332 (G1)
|
Quality Score |
201.009 |
Status
|
Not validated
|
Chromosome |
3 |
Chromosomal Location |
64444916-64472855 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to T
at 64454671 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Serine to Threonine
at position 543
(S543T)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000135148
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000165012]
[ENSMUST00000176481]
|
AlphaFold |
H3BK29 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000165012
AA Change: S454T
PolyPhen 2
Score 0.041 (Sensitivity: 0.94; Specificity: 0.83)
|
SMART Domains |
Protein: ENSMUSP00000131831 Gene: ENSMUSG00000090581 AA Change: S454T
Domain | Start | End | E-Value | Type |
Pfam:ANF_receptor
|
1 |
416 |
1.4e-72 |
PFAM |
Pfam:Peripla_BP_6
|
58 |
244 |
1.2e-10 |
PFAM |
Pfam:NCD3G
|
458 |
511 |
1.8e-17 |
PFAM |
Pfam:7tm_3
|
542 |
779 |
3.9e-76 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000176481
AA Change: S543T
PolyPhen 2
Score 0.010 (Sensitivity: 0.96; Specificity: 0.77)
|
SMART Domains |
Protein: ENSMUSP00000135148 Gene: ENSMUSG00000090581 AA Change: S543T
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
Pfam:ANF_receptor
|
88 |
505 |
9.8e-77 |
PFAM |
Pfam:Peripla_BP_6
|
142 |
331 |
3.4e-10 |
PFAM |
Pfam:NCD3G
|
547 |
600 |
5.4e-17 |
PFAM |
Pfam:7tm_3
|
633 |
867 |
3.9e-47 |
PFAM |
|
Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.7%
- 20x: 99.0%
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 83 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Ankrd55 |
T |
G |
13: 112,459,677 (GRCm39) |
D90E |
probably damaging |
Het |
Arid1b |
C |
A |
17: 5,045,584 (GRCm39) |
P124Q |
unknown |
Het |
Atxn2 |
C |
T |
5: 121,923,425 (GRCm39) |
P698L |
probably damaging |
Het |
Bend7 |
T |
C |
2: 4,757,531 (GRCm39) |
V191A |
probably benign |
Het |
Bltp1 |
G |
A |
3: 37,104,989 (GRCm39) |
D1485N |
|
Het |
C2cd4a |
T |
G |
9: 67,738,779 (GRCm39) |
H88P |
probably damaging |
Het |
Cacna1s |
C |
T |
1: 136,020,452 (GRCm39) |
Q830* |
probably null |
Het |
Camta1 |
T |
C |
4: 151,228,474 (GRCm39) |
E786G |
possibly damaging |
Het |
Caprin1 |
A |
G |
2: 103,603,390 (GRCm39) |
S443P |
probably benign |
Het |
Cass4 |
T |
G |
2: 172,269,806 (GRCm39) |
F629L |
probably benign |
Het |
Ccdc149 |
T |
A |
5: 52,562,399 (GRCm39) |
D209V |
probably damaging |
Het |
Ccdc150 |
T |
C |
1: 54,316,910 (GRCm39) |
V263A |
probably damaging |
Het |
Cfc1 |
C |
T |
1: 34,576,453 (GRCm39) |
R145C |
probably damaging |
Het |
Cnn1 |
C |
A |
9: 22,019,350 (GRCm39) |
D239E |
probably damaging |
Het |
Cobll1 |
C |
T |
2: 64,933,516 (GRCm39) |
S493N |
probably benign |
Het |
Cox20 |
A |
T |
1: 178,146,771 (GRCm39) |
K13* |
probably null |
Het |
Dclk1 |
G |
A |
3: 55,370,500 (GRCm39) |
S340N |
probably damaging |
Het |
Dennd2c |
T |
A |
3: 103,038,877 (GRCm39) |
D8E |
probably benign |
Het |
Dnajc10 |
A |
T |
2: 80,175,327 (GRCm39) |
K571N |
probably benign |
Het |
Dock7 |
T |
A |
4: 98,896,280 (GRCm39) |
I58F |
|
Het |
Dpy19l4 |
A |
G |
4: 11,304,298 (GRCm39) |
|
probably null |
Het |
Eef2k |
A |
G |
7: 120,483,918 (GRCm39) |
D218G |
probably benign |
Het |
Eya4 |
G |
T |
10: 22,989,845 (GRCm39) |
T504K |
probably damaging |
Het |
Fam222a |
T |
C |
5: 114,749,398 (GRCm39) |
I198T |
probably damaging |
Het |
Fbxw10 |
T |
A |
11: 62,748,585 (GRCm39) |
F404Y |
probably benign |
Het |
Fbxw24 |
A |
T |
9: 109,452,681 (GRCm39) |
Y105N |
probably damaging |
Het |
Fzd10 |
T |
G |
5: 128,678,316 (GRCm39) |
L12R |
possibly damaging |
Het |
Gm14443 |
A |
G |
2: 175,017,610 (GRCm39) |
|
probably benign |
Het |
Gm21028 |
A |
T |
7: 42,227,904 (GRCm39) |
C37S |
probably damaging |
Het |
Gpr179 |
G |
T |
11: 97,229,551 (GRCm39) |
A868E |
probably damaging |
Het |
Greb1l |
T |
A |
18: 10,532,796 (GRCm39) |
Y897N |
possibly damaging |
Het |
Grid1 |
A |
T |
14: 35,045,360 (GRCm39) |
Y401F |
probably benign |
Het |
Heatr5a |
G |
A |
12: 51,946,068 (GRCm39) |
T1181I |
probably benign |
Het |
Herc4 |
G |
A |
10: 63,144,125 (GRCm39) |
V753I |
probably damaging |
Het |
Htra1 |
A |
T |
7: 130,563,851 (GRCm39) |
K241* |
probably null |
Het |
Kat6b |
A |
G |
14: 21,720,093 (GRCm39) |
I1482V |
probably benign |
Het |
Kif19a |
G |
T |
11: 114,680,033 (GRCm39) |
R790L |
possibly damaging |
Het |
Lmf2 |
G |
A |
15: 89,239,577 (GRCm39) |
L26F |
probably damaging |
Het |
Lpcat1 |
T |
C |
13: 73,659,462 (GRCm39) |
L408S |
probably damaging |
Het |
Lrrc69 |
T |
A |
4: 14,774,987 (GRCm39) |
R94W |
probably damaging |
Het |
Map4 |
A |
G |
9: 109,864,223 (GRCm39) |
T483A |
probably benign |
Het |
Mettl3 |
C |
A |
14: 52,534,125 (GRCm39) |
C483F |
probably damaging |
Het |
Myh13 |
A |
G |
11: 67,254,109 (GRCm39) |
D1543G |
possibly damaging |
Het |
Myh2 |
G |
A |
11: 67,070,209 (GRCm39) |
V414I |
probably damaging |
Het |
Myh7b |
C |
T |
2: 155,470,722 (GRCm39) |
R1057C |
probably damaging |
Het |
Myo9b |
A |
G |
8: 71,812,246 (GRCm39) |
S2006G |
probably benign |
Het |
Nelfcd |
A |
G |
2: 174,264,978 (GRCm39) |
K239R |
probably benign |
Het |
Nlrp4a |
T |
C |
7: 26,159,077 (GRCm39) |
S786P |
probably damaging |
Het |
Or5g23 |
T |
A |
2: 85,438,331 (GRCm39) |
K308* |
probably null |
Het |
Or6c205 |
A |
G |
10: 129,086,972 (GRCm39) |
T190A |
probably damaging |
Het |
Pdzrn4 |
G |
T |
15: 92,295,216 (GRCm39) |
V141L |
probably benign |
Het |
Phip |
G |
T |
9: 82,757,412 (GRCm39) |
R1587S |
probably damaging |
Het |
Plce1 |
A |
G |
19: 38,726,377 (GRCm39) |
E1448G |
probably damaging |
Het |
Plrg1 |
T |
C |
3: 82,976,308 (GRCm39) |
S326P |
possibly damaging |
Het |
Pom121l2 |
T |
A |
13: 22,165,852 (GRCm39) |
V41E |
probably damaging |
Het |
Pramel17 |
C |
T |
4: 101,695,144 (GRCm39) |
V56M |
probably damaging |
Het |
Preb |
G |
T |
5: 31,113,673 (GRCm39) |
S311* |
probably null |
Het |
Prss33 |
T |
A |
17: 24,053,723 (GRCm39) |
D118V |
probably damaging |
Het |
Pum1 |
C |
A |
4: 130,499,209 (GRCm39) |
Y1008* |
probably null |
Het |
Rassf2 |
G |
A |
2: 131,846,326 (GRCm39) |
R144C |
probably damaging |
Het |
Rnf123 |
A |
T |
9: 107,944,704 (GRCm39) |
M429K |
probably benign |
Het |
Rtl1 |
T |
A |
12: 109,557,291 (GRCm39) |
H1516L |
probably benign |
Het |
Scyl3 |
T |
A |
1: 163,764,007 (GRCm39) |
N124K |
probably damaging |
Het |
Sec24b |
A |
G |
3: 129,801,220 (GRCm39) |
S488P |
probably benign |
Het |
Shc4 |
T |
A |
2: 125,520,618 (GRCm39) |
D277V |
probably damaging |
Het |
Sorl1 |
T |
A |
9: 41,912,814 (GRCm39) |
D1389V |
probably damaging |
Het |
Srcap |
T |
A |
7: 127,158,812 (GRCm39) |
I2896N |
unknown |
Het |
Steap3 |
T |
A |
1: 120,155,564 (GRCm39) |
Y465F |
probably benign |
Het |
Tecta |
C |
A |
9: 42,284,193 (GRCm39) |
C964F |
probably damaging |
Het |
Thap1 |
AGCAGCATCTGCTCG |
AG |
8: 26,650,882 (GRCm39) |
|
probably null |
Het |
Thap1 |
CAGCATCTGCTCGGAGCA |
CAGCA |
8: 26,650,884 (GRCm39) |
|
probably null |
Het |
Tmem178b |
G |
A |
6: 39,981,181 (GRCm39) |
W72* |
probably null |
Het |
Tmem235 |
T |
G |
11: 117,751,665 (GRCm39) |
Y30D |
probably damaging |
Het |
Tpst1 |
C |
A |
5: 130,163,301 (GRCm39) |
T366K |
probably benign |
Het |
Trdv2-1 |
C |
A |
14: 54,183,848 (GRCm39) |
P27T |
probably benign |
Het |
Trim37 |
G |
T |
11: 87,058,328 (GRCm39) |
L335F |
possibly damaging |
Het |
Usp9y |
G |
A |
Y: 1,341,873 (GRCm39) |
R1331W |
probably damaging |
Het |
Vmn1r1 |
T |
G |
1: 181,985,002 (GRCm39) |
H221P |
probably damaging |
Het |
Wdpcp |
C |
T |
11: 21,661,522 (GRCm39) |
P265S |
probably benign |
Het |
Wdr64 |
T |
C |
1: 175,599,871 (GRCm39) |
L566P |
possibly damaging |
Het |
Zfp248 |
A |
G |
6: 118,405,891 (GRCm39) |
I566T |
possibly damaging |
Het |
Zfp595 |
T |
A |
13: 67,465,463 (GRCm39) |
I270F |
probably damaging |
Het |
Zfp715 |
A |
G |
7: 42,948,847 (GRCm39) |
L371P |
probably damaging |
Het |
|
Other mutations in Vmn2r6 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01547:Vmn2r6
|
APN |
3 |
64,445,525 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01968:Vmn2r6
|
APN |
3 |
64,463,766 (GRCm39) |
missense |
possibly damaging |
0.94 |
IGL02009:Vmn2r6
|
APN |
3 |
64,445,323 (GRCm39) |
missense |
possibly damaging |
0.61 |
IGL02039:Vmn2r6
|
APN |
3 |
64,463,610 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02652:Vmn2r6
|
APN |
3 |
64,463,749 (GRCm39) |
missense |
probably benign |
0.24 |
IGL02737:Vmn2r6
|
APN |
3 |
64,463,911 (GRCm39) |
missense |
possibly damaging |
0.55 |
IGL02808:Vmn2r6
|
APN |
3 |
64,463,917 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03066:Vmn2r6
|
APN |
3 |
64,472,574 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL03331:Vmn2r6
|
APN |
3 |
64,445,428 (GRCm39) |
missense |
probably damaging |
1.00 |
BB010:Vmn2r6
|
UTSW |
3 |
64,467,224 (GRCm39) |
missense |
probably benign |
0.02 |
BB020:Vmn2r6
|
UTSW |
3 |
64,467,224 (GRCm39) |
missense |
probably benign |
0.02 |
R0010:Vmn2r6
|
UTSW |
3 |
64,466,966 (GRCm39) |
nonsense |
probably null |
|
R0206:Vmn2r6
|
UTSW |
3 |
64,447,333 (GRCm39) |
missense |
probably benign |
|
R0206:Vmn2r6
|
UTSW |
3 |
64,447,333 (GRCm39) |
missense |
probably benign |
|
R0208:Vmn2r6
|
UTSW |
3 |
64,447,333 (GRCm39) |
missense |
probably benign |
|
R0427:Vmn2r6
|
UTSW |
3 |
64,467,008 (GRCm39) |
missense |
probably damaging |
1.00 |
R0466:Vmn2r6
|
UTSW |
3 |
64,463,723 (GRCm39) |
missense |
probably damaging |
1.00 |
R1018:Vmn2r6
|
UTSW |
3 |
64,464,261 (GRCm39) |
missense |
probably benign |
0.00 |
R1104:Vmn2r6
|
UTSW |
3 |
64,445,487 (GRCm39) |
missense |
possibly damaging |
0.93 |
R1186:Vmn2r6
|
UTSW |
3 |
64,472,488 (GRCm39) |
missense |
probably benign |
0.01 |
R1245:Vmn2r6
|
UTSW |
3 |
64,464,211 (GRCm39) |
missense |
possibly damaging |
0.53 |
R1295:Vmn2r6
|
UTSW |
3 |
64,445,694 (GRCm39) |
missense |
probably damaging |
1.00 |
R1473:Vmn2r6
|
UTSW |
3 |
64,445,579 (GRCm39) |
nonsense |
probably null |
|
R1498:Vmn2r6
|
UTSW |
3 |
64,463,890 (GRCm39) |
missense |
probably damaging |
1.00 |
R1925:Vmn2r6
|
UTSW |
3 |
64,463,698 (GRCm39) |
missense |
possibly damaging |
0.87 |
R2044:Vmn2r6
|
UTSW |
3 |
64,445,262 (GRCm39) |
missense |
probably damaging |
0.96 |
R2069:Vmn2r6
|
UTSW |
3 |
64,463,519 (GRCm39) |
missense |
possibly damaging |
0.89 |
R2253:Vmn2r6
|
UTSW |
3 |
64,467,139 (GRCm39) |
missense |
probably damaging |
1.00 |
R2261:Vmn2r6
|
UTSW |
3 |
64,464,090 (GRCm39) |
missense |
probably benign |
0.24 |
R2262:Vmn2r6
|
UTSW |
3 |
64,464,090 (GRCm39) |
missense |
probably benign |
0.24 |
R2350:Vmn2r6
|
UTSW |
3 |
64,463,773 (GRCm39) |
missense |
probably benign |
0.01 |
R2680:Vmn2r6
|
UTSW |
3 |
64,445,707 (GRCm39) |
missense |
possibly damaging |
0.91 |
R2846:Vmn2r6
|
UTSW |
3 |
64,464,211 (GRCm39) |
missense |
possibly damaging |
0.53 |
R2860:Vmn2r6
|
UTSW |
3 |
64,454,760 (GRCm39) |
missense |
probably benign |
0.00 |
R2861:Vmn2r6
|
UTSW |
3 |
64,454,760 (GRCm39) |
missense |
probably benign |
0.00 |
R3766:Vmn2r6
|
UTSW |
3 |
64,463,929 (GRCm39) |
missense |
probably benign |
0.19 |
R3870:Vmn2r6
|
UTSW |
3 |
64,464,042 (GRCm39) |
missense |
probably damaging |
0.96 |
R4018:Vmn2r6
|
UTSW |
3 |
64,463,893 (GRCm39) |
missense |
probably benign |
0.05 |
R4024:Vmn2r6
|
UTSW |
3 |
64,445,671 (GRCm39) |
missense |
possibly damaging |
0.73 |
R4026:Vmn2r6
|
UTSW |
3 |
64,445,671 (GRCm39) |
missense |
possibly damaging |
0.73 |
R4227:Vmn2r6
|
UTSW |
3 |
64,445,369 (GRCm39) |
missense |
probably damaging |
0.99 |
R4526:Vmn2r6
|
UTSW |
3 |
64,445,145 (GRCm39) |
missense |
probably benign |
0.32 |
R4570:Vmn2r6
|
UTSW |
3 |
64,467,068 (GRCm39) |
missense |
probably benign |
0.31 |
R4894:Vmn2r6
|
UTSW |
3 |
64,454,829 (GRCm39) |
missense |
probably benign |
|
R4934:Vmn2r6
|
UTSW |
3 |
64,463,766 (GRCm39) |
missense |
probably damaging |
0.99 |
R5057:Vmn2r6
|
UTSW |
3 |
64,445,207 (GRCm39) |
missense |
probably damaging |
1.00 |
R5059:Vmn2r6
|
UTSW |
3 |
64,445,044 (GRCm39) |
missense |
possibly damaging |
0.89 |
R5148:Vmn2r6
|
UTSW |
3 |
64,464,015 (GRCm39) |
missense |
probably damaging |
0.99 |
R5155:Vmn2r6
|
UTSW |
3 |
64,445,935 (GRCm39) |
missense |
probably benign |
0.44 |
R5179:Vmn2r6
|
UTSW |
3 |
64,445,411 (GRCm39) |
missense |
probably benign |
0.00 |
R5256:Vmn2r6
|
UTSW |
3 |
64,464,263 (GRCm39) |
missense |
probably benign |
0.33 |
R5861:Vmn2r6
|
UTSW |
3 |
64,463,454 (GRCm39) |
missense |
probably benign |
0.00 |
R5950:Vmn2r6
|
UTSW |
3 |
64,472,652 (GRCm39) |
missense |
probably benign |
0.05 |
R6081:Vmn2r6
|
UTSW |
3 |
64,463,953 (GRCm39) |
missense |
probably benign |
0.25 |
R6173:Vmn2r6
|
UTSW |
3 |
64,467,176 (GRCm39) |
missense |
probably damaging |
1.00 |
R6190:Vmn2r6
|
UTSW |
3 |
64,445,424 (GRCm39) |
missense |
probably benign |
0.04 |
R6240:Vmn2r6
|
UTSW |
3 |
64,464,226 (GRCm39) |
missense |
probably damaging |
1.00 |
R6433:Vmn2r6
|
UTSW |
3 |
64,454,801 (GRCm39) |
nonsense |
probably null |
|
R6645:Vmn2r6
|
UTSW |
3 |
64,464,297 (GRCm39) |
missense |
probably damaging |
1.00 |
R6791:Vmn2r6
|
UTSW |
3 |
64,445,580 (GRCm39) |
missense |
probably damaging |
1.00 |
R7265:Vmn2r6
|
UTSW |
3 |
64,464,195 (GRCm39) |
missense |
probably benign |
0.00 |
R7503:Vmn2r6
|
UTSW |
3 |
64,447,372 (GRCm39) |
nonsense |
probably null |
|
R7562:Vmn2r6
|
UTSW |
3 |
64,463,941 (GRCm39) |
missense |
probably benign |
0.00 |
R7584:Vmn2r6
|
UTSW |
3 |
64,472,683 (GRCm39) |
missense |
probably benign |
0.07 |
R7611:Vmn2r6
|
UTSW |
3 |
64,472,563 (GRCm39) |
missense |
probably damaging |
0.98 |
R7759:Vmn2r6
|
UTSW |
3 |
64,463,991 (GRCm39) |
missense |
probably damaging |
1.00 |
R7834:Vmn2r6
|
UTSW |
3 |
64,445,443 (GRCm39) |
missense |
probably damaging |
1.00 |
R7933:Vmn2r6
|
UTSW |
3 |
64,467,224 (GRCm39) |
missense |
probably benign |
0.02 |
R7982:Vmn2r6
|
UTSW |
3 |
64,467,241 (GRCm39) |
missense |
probably damaging |
1.00 |
R8024:Vmn2r6
|
UTSW |
3 |
64,467,245 (GRCm39) |
missense |
probably benign |
0.40 |
R8074:Vmn2r6
|
UTSW |
3 |
64,455,064 (GRCm39) |
intron |
probably benign |
|
R8169:Vmn2r6
|
UTSW |
3 |
64,447,310 (GRCm39) |
missense |
probably benign |
0.01 |
R8337:Vmn2r6
|
UTSW |
3 |
64,463,526 (GRCm39) |
nonsense |
probably null |
|
R8736:Vmn2r6
|
UTSW |
3 |
64,467,221 (GRCm39) |
missense |
probably damaging |
1.00 |
R8962:Vmn2r6
|
UTSW |
3 |
64,463,576 (GRCm39) |
missense |
probably damaging |
1.00 |
R9139:Vmn2r6
|
UTSW |
3 |
64,464,277 (GRCm39) |
missense |
probably benign |
0.12 |
R9206:Vmn2r6
|
UTSW |
3 |
64,467,032 (GRCm39) |
missense |
probably damaging |
0.97 |
R9295:Vmn2r6
|
UTSW |
3 |
64,463,484 (GRCm39) |
missense |
probably benign |
0.00 |
R9616:Vmn2r6
|
UTSW |
3 |
64,445,724 (GRCm39) |
missense |
probably damaging |
1.00 |
R9663:Vmn2r6
|
UTSW |
3 |
64,463,549 (GRCm39) |
missense |
possibly damaging |
0.90 |
R9685:Vmn2r6
|
UTSW |
3 |
64,464,081 (GRCm39) |
missense |
probably benign |
0.19 |
X0020:Vmn2r6
|
UTSW |
3 |
64,445,871 (GRCm39) |
missense |
probably benign |
|
X0066:Vmn2r6
|
UTSW |
3 |
64,454,799 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1176:Vmn2r6
|
UTSW |
3 |
64,463,746 (GRCm39) |
missense |
probably damaging |
0.98 |
|
Predicted Primers |
PCR Primer
(F):5'- TACTGTGTTCCAATGAAACATTCTC -3'
(R):5'- CCTCATTATTAGCTATGGTTGTACTTG -3'
Sequencing Primer
(F):5'- AAAGCGTTAGGTGTTTTGC -3'
(R):5'- TACCCATGATGGAAAGAAAATAGAAC -3'
|
Posted On |
2022-04-18 |