Incidental Mutation 'R9332:Vmn2r6'
ID 706901
Institutional Source Beutler Lab
Gene Symbol Vmn2r6
Ensembl Gene ENSMUSG00000090581
Gene Name vomeronasal 2, receptor 6
Synonyms EG667069, EG620718
MMRRC Submission
Accession Numbers
Essential gene? Probably non essential (E-score: 0.198) question?
Stock # R9332 (G1)
Quality Score 201.009
Status Not validated
Chromosome 3
Chromosomal Location 64444916-64472855 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 64454671 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Threonine at position 543 (S543T)
Ref Sequence ENSEMBL: ENSMUSP00000135148 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000165012] [ENSMUST00000176481]
AlphaFold H3BK29
Predicted Effect probably benign
Transcript: ENSMUST00000165012
AA Change: S454T

PolyPhen 2 Score 0.041 (Sensitivity: 0.94; Specificity: 0.83)
SMART Domains Protein: ENSMUSP00000131831
Gene: ENSMUSG00000090581
AA Change: S454T

DomainStartEndE-ValueType
Pfam:ANF_receptor 1 416 1.4e-72 PFAM
Pfam:Peripla_BP_6 58 244 1.2e-10 PFAM
Pfam:NCD3G 458 511 1.8e-17 PFAM
Pfam:7tm_3 542 779 3.9e-76 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000176481
AA Change: S543T

PolyPhen 2 Score 0.010 (Sensitivity: 0.96; Specificity: 0.77)
SMART Domains Protein: ENSMUSP00000135148
Gene: ENSMUSG00000090581
AA Change: S543T

DomainStartEndE-ValueType
signal peptide 1 22 N/A INTRINSIC
Pfam:ANF_receptor 88 505 9.8e-77 PFAM
Pfam:Peripla_BP_6 142 331 3.4e-10 PFAM
Pfam:NCD3G 547 600 5.4e-17 PFAM
Pfam:7tm_3 633 867 3.9e-47 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 99.0%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 83 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Ankrd55 T G 13: 112,459,677 (GRCm39) D90E probably damaging Het
Arid1b C A 17: 5,045,584 (GRCm39) P124Q unknown Het
Atxn2 C T 5: 121,923,425 (GRCm39) P698L probably damaging Het
Bend7 T C 2: 4,757,531 (GRCm39) V191A probably benign Het
Bltp1 G A 3: 37,104,989 (GRCm39) D1485N Het
C2cd4a T G 9: 67,738,779 (GRCm39) H88P probably damaging Het
Cacna1s C T 1: 136,020,452 (GRCm39) Q830* probably null Het
Camta1 T C 4: 151,228,474 (GRCm39) E786G possibly damaging Het
Caprin1 A G 2: 103,603,390 (GRCm39) S443P probably benign Het
Cass4 T G 2: 172,269,806 (GRCm39) F629L probably benign Het
Ccdc149 T A 5: 52,562,399 (GRCm39) D209V probably damaging Het
Ccdc150 T C 1: 54,316,910 (GRCm39) V263A probably damaging Het
Cfc1 C T 1: 34,576,453 (GRCm39) R145C probably damaging Het
Cnn1 C A 9: 22,019,350 (GRCm39) D239E probably damaging Het
Cobll1 C T 2: 64,933,516 (GRCm39) S493N probably benign Het
Cox20 A T 1: 178,146,771 (GRCm39) K13* probably null Het
Dclk1 G A 3: 55,370,500 (GRCm39) S340N probably damaging Het
Dennd2c T A 3: 103,038,877 (GRCm39) D8E probably benign Het
Dnajc10 A T 2: 80,175,327 (GRCm39) K571N probably benign Het
Dock7 T A 4: 98,896,280 (GRCm39) I58F Het
Dpy19l4 A G 4: 11,304,298 (GRCm39) probably null Het
Eef2k A G 7: 120,483,918 (GRCm39) D218G probably benign Het
Eya4 G T 10: 22,989,845 (GRCm39) T504K probably damaging Het
Fam222a T C 5: 114,749,398 (GRCm39) I198T probably damaging Het
Fbxw10 T A 11: 62,748,585 (GRCm39) F404Y probably benign Het
Fbxw24 A T 9: 109,452,681 (GRCm39) Y105N probably damaging Het
Fzd10 T G 5: 128,678,316 (GRCm39) L12R possibly damaging Het
Gm14443 A G 2: 175,017,610 (GRCm39) probably benign Het
Gm21028 A T 7: 42,227,904 (GRCm39) C37S probably damaging Het
Gpr179 G T 11: 97,229,551 (GRCm39) A868E probably damaging Het
Greb1l T A 18: 10,532,796 (GRCm39) Y897N possibly damaging Het
Grid1 A T 14: 35,045,360 (GRCm39) Y401F probably benign Het
Heatr5a G A 12: 51,946,068 (GRCm39) T1181I probably benign Het
Herc4 G A 10: 63,144,125 (GRCm39) V753I probably damaging Het
Htra1 A T 7: 130,563,851 (GRCm39) K241* probably null Het
Kat6b A G 14: 21,720,093 (GRCm39) I1482V probably benign Het
Kif19a G T 11: 114,680,033 (GRCm39) R790L possibly damaging Het
Lmf2 G A 15: 89,239,577 (GRCm39) L26F probably damaging Het
Lpcat1 T C 13: 73,659,462 (GRCm39) L408S probably damaging Het
Lrrc69 T A 4: 14,774,987 (GRCm39) R94W probably damaging Het
Map4 A G 9: 109,864,223 (GRCm39) T483A probably benign Het
Mettl3 C A 14: 52,534,125 (GRCm39) C483F probably damaging Het
Myh13 A G 11: 67,254,109 (GRCm39) D1543G possibly damaging Het
Myh2 G A 11: 67,070,209 (GRCm39) V414I probably damaging Het
Myh7b C T 2: 155,470,722 (GRCm39) R1057C probably damaging Het
Myo9b A G 8: 71,812,246 (GRCm39) S2006G probably benign Het
Nelfcd A G 2: 174,264,978 (GRCm39) K239R probably benign Het
Nlrp4a T C 7: 26,159,077 (GRCm39) S786P probably damaging Het
Or5g23 T A 2: 85,438,331 (GRCm39) K308* probably null Het
Or6c205 A G 10: 129,086,972 (GRCm39) T190A probably damaging Het
Pdzrn4 G T 15: 92,295,216 (GRCm39) V141L probably benign Het
Phip G T 9: 82,757,412 (GRCm39) R1587S probably damaging Het
Plce1 A G 19: 38,726,377 (GRCm39) E1448G probably damaging Het
Plrg1 T C 3: 82,976,308 (GRCm39) S326P possibly damaging Het
Pom121l2 T A 13: 22,165,852 (GRCm39) V41E probably damaging Het
Pramel17 C T 4: 101,695,144 (GRCm39) V56M probably damaging Het
Preb G T 5: 31,113,673 (GRCm39) S311* probably null Het
Prss33 T A 17: 24,053,723 (GRCm39) D118V probably damaging Het
Pum1 C A 4: 130,499,209 (GRCm39) Y1008* probably null Het
Rassf2 G A 2: 131,846,326 (GRCm39) R144C probably damaging Het
Rnf123 A T 9: 107,944,704 (GRCm39) M429K probably benign Het
Rtl1 T A 12: 109,557,291 (GRCm39) H1516L probably benign Het
Scyl3 T A 1: 163,764,007 (GRCm39) N124K probably damaging Het
Sec24b A G 3: 129,801,220 (GRCm39) S488P probably benign Het
Shc4 T A 2: 125,520,618 (GRCm39) D277V probably damaging Het
Sorl1 T A 9: 41,912,814 (GRCm39) D1389V probably damaging Het
Srcap T A 7: 127,158,812 (GRCm39) I2896N unknown Het
Steap3 T A 1: 120,155,564 (GRCm39) Y465F probably benign Het
Tecta C A 9: 42,284,193 (GRCm39) C964F probably damaging Het
Thap1 AGCAGCATCTGCTCG AG 8: 26,650,882 (GRCm39) probably null Het
Thap1 CAGCATCTGCTCGGAGCA CAGCA 8: 26,650,884 (GRCm39) probably null Het
Tmem178b G A 6: 39,981,181 (GRCm39) W72* probably null Het
Tmem235 T G 11: 117,751,665 (GRCm39) Y30D probably damaging Het
Tpst1 C A 5: 130,163,301 (GRCm39) T366K probably benign Het
Trdv2-1 C A 14: 54,183,848 (GRCm39) P27T probably benign Het
Trim37 G T 11: 87,058,328 (GRCm39) L335F possibly damaging Het
Usp9y G A Y: 1,341,873 (GRCm39) R1331W probably damaging Het
Vmn1r1 T G 1: 181,985,002 (GRCm39) H221P probably damaging Het
Wdpcp C T 11: 21,661,522 (GRCm39) P265S probably benign Het
Wdr64 T C 1: 175,599,871 (GRCm39) L566P possibly damaging Het
Zfp248 A G 6: 118,405,891 (GRCm39) I566T possibly damaging Het
Zfp595 T A 13: 67,465,463 (GRCm39) I270F probably damaging Het
Zfp715 A G 7: 42,948,847 (GRCm39) L371P probably damaging Het
Other mutations in Vmn2r6
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01547:Vmn2r6 APN 3 64,445,525 (GRCm39) missense probably damaging 1.00
IGL01968:Vmn2r6 APN 3 64,463,766 (GRCm39) missense possibly damaging 0.94
IGL02009:Vmn2r6 APN 3 64,445,323 (GRCm39) missense possibly damaging 0.61
IGL02039:Vmn2r6 APN 3 64,463,610 (GRCm39) missense probably damaging 1.00
IGL02652:Vmn2r6 APN 3 64,463,749 (GRCm39) missense probably benign 0.24
IGL02737:Vmn2r6 APN 3 64,463,911 (GRCm39) missense possibly damaging 0.55
IGL02808:Vmn2r6 APN 3 64,463,917 (GRCm39) missense probably damaging 1.00
IGL03066:Vmn2r6 APN 3 64,472,574 (GRCm39) missense probably damaging 0.99
IGL03331:Vmn2r6 APN 3 64,445,428 (GRCm39) missense probably damaging 1.00
BB010:Vmn2r6 UTSW 3 64,467,224 (GRCm39) missense probably benign 0.02
BB020:Vmn2r6 UTSW 3 64,467,224 (GRCm39) missense probably benign 0.02
R0010:Vmn2r6 UTSW 3 64,466,966 (GRCm39) nonsense probably null
R0206:Vmn2r6 UTSW 3 64,447,333 (GRCm39) missense probably benign
R0206:Vmn2r6 UTSW 3 64,447,333 (GRCm39) missense probably benign
R0208:Vmn2r6 UTSW 3 64,447,333 (GRCm39) missense probably benign
R0427:Vmn2r6 UTSW 3 64,467,008 (GRCm39) missense probably damaging 1.00
R0466:Vmn2r6 UTSW 3 64,463,723 (GRCm39) missense probably damaging 1.00
R1018:Vmn2r6 UTSW 3 64,464,261 (GRCm39) missense probably benign 0.00
R1104:Vmn2r6 UTSW 3 64,445,487 (GRCm39) missense possibly damaging 0.93
R1186:Vmn2r6 UTSW 3 64,472,488 (GRCm39) missense probably benign 0.01
R1245:Vmn2r6 UTSW 3 64,464,211 (GRCm39) missense possibly damaging 0.53
R1295:Vmn2r6 UTSW 3 64,445,694 (GRCm39) missense probably damaging 1.00
R1473:Vmn2r6 UTSW 3 64,445,579 (GRCm39) nonsense probably null
R1498:Vmn2r6 UTSW 3 64,463,890 (GRCm39) missense probably damaging 1.00
R1925:Vmn2r6 UTSW 3 64,463,698 (GRCm39) missense possibly damaging 0.87
R2044:Vmn2r6 UTSW 3 64,445,262 (GRCm39) missense probably damaging 0.96
R2069:Vmn2r6 UTSW 3 64,463,519 (GRCm39) missense possibly damaging 0.89
R2253:Vmn2r6 UTSW 3 64,467,139 (GRCm39) missense probably damaging 1.00
R2261:Vmn2r6 UTSW 3 64,464,090 (GRCm39) missense probably benign 0.24
R2262:Vmn2r6 UTSW 3 64,464,090 (GRCm39) missense probably benign 0.24
R2350:Vmn2r6 UTSW 3 64,463,773 (GRCm39) missense probably benign 0.01
R2680:Vmn2r6 UTSW 3 64,445,707 (GRCm39) missense possibly damaging 0.91
R2846:Vmn2r6 UTSW 3 64,464,211 (GRCm39) missense possibly damaging 0.53
R2860:Vmn2r6 UTSW 3 64,454,760 (GRCm39) missense probably benign 0.00
R2861:Vmn2r6 UTSW 3 64,454,760 (GRCm39) missense probably benign 0.00
R3766:Vmn2r6 UTSW 3 64,463,929 (GRCm39) missense probably benign 0.19
R3870:Vmn2r6 UTSW 3 64,464,042 (GRCm39) missense probably damaging 0.96
R4018:Vmn2r6 UTSW 3 64,463,893 (GRCm39) missense probably benign 0.05
R4024:Vmn2r6 UTSW 3 64,445,671 (GRCm39) missense possibly damaging 0.73
R4026:Vmn2r6 UTSW 3 64,445,671 (GRCm39) missense possibly damaging 0.73
R4227:Vmn2r6 UTSW 3 64,445,369 (GRCm39) missense probably damaging 0.99
R4526:Vmn2r6 UTSW 3 64,445,145 (GRCm39) missense probably benign 0.32
R4570:Vmn2r6 UTSW 3 64,467,068 (GRCm39) missense probably benign 0.31
R4894:Vmn2r6 UTSW 3 64,454,829 (GRCm39) missense probably benign
R4934:Vmn2r6 UTSW 3 64,463,766 (GRCm39) missense probably damaging 0.99
R5057:Vmn2r6 UTSW 3 64,445,207 (GRCm39) missense probably damaging 1.00
R5059:Vmn2r6 UTSW 3 64,445,044 (GRCm39) missense possibly damaging 0.89
R5148:Vmn2r6 UTSW 3 64,464,015 (GRCm39) missense probably damaging 0.99
R5155:Vmn2r6 UTSW 3 64,445,935 (GRCm39) missense probably benign 0.44
R5179:Vmn2r6 UTSW 3 64,445,411 (GRCm39) missense probably benign 0.00
R5256:Vmn2r6 UTSW 3 64,464,263 (GRCm39) missense probably benign 0.33
R5861:Vmn2r6 UTSW 3 64,463,454 (GRCm39) missense probably benign 0.00
R5950:Vmn2r6 UTSW 3 64,472,652 (GRCm39) missense probably benign 0.05
R6081:Vmn2r6 UTSW 3 64,463,953 (GRCm39) missense probably benign 0.25
R6173:Vmn2r6 UTSW 3 64,467,176 (GRCm39) missense probably damaging 1.00
R6190:Vmn2r6 UTSW 3 64,445,424 (GRCm39) missense probably benign 0.04
R6240:Vmn2r6 UTSW 3 64,464,226 (GRCm39) missense probably damaging 1.00
R6433:Vmn2r6 UTSW 3 64,454,801 (GRCm39) nonsense probably null
R6645:Vmn2r6 UTSW 3 64,464,297 (GRCm39) missense probably damaging 1.00
R6791:Vmn2r6 UTSW 3 64,445,580 (GRCm39) missense probably damaging 1.00
R7265:Vmn2r6 UTSW 3 64,464,195 (GRCm39) missense probably benign 0.00
R7503:Vmn2r6 UTSW 3 64,447,372 (GRCm39) nonsense probably null
R7562:Vmn2r6 UTSW 3 64,463,941 (GRCm39) missense probably benign 0.00
R7584:Vmn2r6 UTSW 3 64,472,683 (GRCm39) missense probably benign 0.07
R7611:Vmn2r6 UTSW 3 64,472,563 (GRCm39) missense probably damaging 0.98
R7759:Vmn2r6 UTSW 3 64,463,991 (GRCm39) missense probably damaging 1.00
R7834:Vmn2r6 UTSW 3 64,445,443 (GRCm39) missense probably damaging 1.00
R7933:Vmn2r6 UTSW 3 64,467,224 (GRCm39) missense probably benign 0.02
R7982:Vmn2r6 UTSW 3 64,467,241 (GRCm39) missense probably damaging 1.00
R8024:Vmn2r6 UTSW 3 64,467,245 (GRCm39) missense probably benign 0.40
R8074:Vmn2r6 UTSW 3 64,455,064 (GRCm39) intron probably benign
R8169:Vmn2r6 UTSW 3 64,447,310 (GRCm39) missense probably benign 0.01
R8337:Vmn2r6 UTSW 3 64,463,526 (GRCm39) nonsense probably null
R8736:Vmn2r6 UTSW 3 64,467,221 (GRCm39) missense probably damaging 1.00
R8962:Vmn2r6 UTSW 3 64,463,576 (GRCm39) missense probably damaging 1.00
R9139:Vmn2r6 UTSW 3 64,464,277 (GRCm39) missense probably benign 0.12
R9206:Vmn2r6 UTSW 3 64,467,032 (GRCm39) missense probably damaging 0.97
R9295:Vmn2r6 UTSW 3 64,463,484 (GRCm39) missense probably benign 0.00
R9616:Vmn2r6 UTSW 3 64,445,724 (GRCm39) missense probably damaging 1.00
R9663:Vmn2r6 UTSW 3 64,463,549 (GRCm39) missense possibly damaging 0.90
R9685:Vmn2r6 UTSW 3 64,464,081 (GRCm39) missense probably benign 0.19
X0020:Vmn2r6 UTSW 3 64,445,871 (GRCm39) missense probably benign
X0066:Vmn2r6 UTSW 3 64,454,799 (GRCm39) missense probably damaging 1.00
Z1176:Vmn2r6 UTSW 3 64,463,746 (GRCm39) missense probably damaging 0.98
Predicted Primers PCR Primer
(F):5'- TACTGTGTTCCAATGAAACATTCTC -3'
(R):5'- CCTCATTATTAGCTATGGTTGTACTTG -3'

Sequencing Primer
(F):5'- AAAGCGTTAGGTGTTTTGC -3'
(R):5'- TACCCATGATGGAAAGAAAATAGAAC -3'
Posted On 2022-04-18