Mutagenetix > Incidental Mutation

Incidental Mutation 'R9342:Lrrn4'

707539

Institutional Source

Beutler Lab

Gene Symbol

Lrrn4

Ensembl Gene

ENSMUSG00000043110

Gene Name

leucine rich repeat neuronal 4

Synonyms

B430119L13Rik

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.068) question?

Stock #

R9342 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

132710225-132722811 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 132712290 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 511 (D511G)

Ref Sequence

ENSEMBL: ENSMUSP00000057005 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028835] [ENSMUST00000049787] [ENSMUST00000124834] [ENSMUST00000124836] [ENSMUST00000154160]

AlphaFold

P59383

Predicted Effect

probably benign
Transcript: ENSMUST00000028835

SMART Domains

Protein: ENSMUSP00000028835
Gene: ENSMUSG00000027357

Domain	Start	End	E-Value	Type
low complexity region	17	46	N/A	INTRINSIC
low complexity region	71	93	N/A	INTRINSIC
Pfam:CDP-OH_P_transf	107	288	1.5e-15	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000049787
AA Change: D511G

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000057005
Gene: ENSMUSG00000043110
AA Change: D511G

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
LRR	105	126	7.36e0	SMART
LRR_TYP	128	151	3.44e-4	SMART
LRR	153	175	1.19e1	SMART
LRR	176	199	1.53e1	SMART
LRR	205	228	2.03e1	SMART
LRR	229	253	3.36e2	SMART
LRRCT	311	363	6.92e-2	SMART
low complexity region	520	530	N/A	INTRINSIC
FN3	577	656	3.73e-10	SMART
transmembrane domain	679	701	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000124834

SMART Domains

Protein: ENSMUSP00000129509
Gene: ENSMUSG00000027357

Domain	Start	End	E-Value	Type
low complexity region	17	46	N/A	INTRINSIC
low complexity region	71	93	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000124836

SMART Domains

Protein: ENSMUSP00000132682
Gene: ENSMUSG00000027357

Domain	Start	End	E-Value	Type
Pfam:CDP-OH_P_transf	1	175	1.6e-12	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000154160

SMART Domains

Protein: ENSMUSP00000129137
Gene: ENSMUSG00000027357

Domain	Start	End	E-Value	Type
Pfam:CDP-OH_P_transf	7	187	1.8e-15	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Homozygous null mutant mice exhibit impaired memory retention in hippocampus- dependent learning tasks such as contextual conditioning and spatial learning. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 84 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A330070K13Rik	T	C	5: 130,407,876 (GRCm39)	I112V	unknown	Het
Aars2	A	G	17: 45,818,002 (GRCm39)	N75D	possibly damaging	Het
Abcf2	G	A	5: 24,778,475 (GRCm39)	R228C	probably benign	Het
Agfg2	A	G	5: 137,652,114 (GRCm39)	L415P	probably benign	Het
Alpi	A	G	1: 87,026,386 (GRCm39)	L535P	unknown	Het
Anxa9	T	G	3: 95,210,359 (GRCm39)	T69P	probably damaging	Het
Arrb2	T	A	11: 70,327,463 (GRCm39)	D79E	probably benign	Het
Bcat1	A	G	6: 144,994,332 (GRCm39)	V55A	probably benign	Het
Cacna1c	A	G	6: 119,034,335 (GRCm39)	L64P		Het
Cd247	A	T	1: 165,682,759 (GRCm39)	D28V	probably damaging	Het
Celsr2	T	A	3: 108,320,442 (GRCm39)	N790I	probably damaging	Het
Clrn1	C	T	3: 58,792,251 (GRCm39)	V71I	probably benign	Het
Cmtr2	T	C	8: 110,949,078 (GRCm39)	Y463H	possibly damaging	Het
Col6a6	T	C	9: 105,663,172 (GRCm39)	T122A	probably benign	Het
Cubn	T	A	2: 13,463,767 (GRCm39)	D646V	probably damaging	Het
Dab2ip	T	A	2: 35,613,105 (GRCm39)	L1062Q	possibly damaging	Het
Dnajb4	T	C	3: 151,892,272 (GRCm39)	N187S	probably benign	Het
Dock10	A	T	1: 80,570,360 (GRCm39)	F365L	probably benign	Het
Erich6	G	A	3: 58,534,101 (GRCm39)	Q309*	probably null	Het
Ext1	T	C	15: 53,208,524 (GRCm39)	H79R	probably benign	Het
Fam187b	T	A	7: 30,677,185 (GRCm39)	C231*	probably null	Het
Fbh1	T	C	2: 11,754,414 (GRCm39)	I775V	probably benign	Het
Fbxo15	T	A	18: 84,983,609 (GRCm39)	M319K	unknown	Het
Fbxo9	A	T	9: 78,002,520 (GRCm39)	M187K	possibly damaging	Het
Fer1l4	T	C	2: 155,877,196 (GRCm39)	D1113G	probably benign	Het
Fsip2	A	T	2: 82,818,747 (GRCm39)	T4827S	possibly damaging	Het
Gm49398	A	T	13: 61,435,478 (GRCm39)	L7Q	probably damaging	Het
H2-M10.4	A	T	17: 36,771,285 (GRCm39)	W298R	probably damaging	Het
Hoxd10	A	G	2: 74,522,982 (GRCm39)	E220G	probably benign	Het
Hrh2	T	G	13: 54,368,222 (GRCm39)	L66R	probably damaging	Het
Igf1r	A	G	7: 67,844,746 (GRCm39)	T840A	probably benign	Het
Iqca1	A	G	1: 90,072,688 (GRCm39)	V64A	probably damaging	Het
Klc2	A	G	19: 5,158,659 (GRCm39)	S612P	probably benign	Het
Klf15	A	G	6: 90,443,851 (GRCm39)	E142G	probably damaging	Het
Krt40	T	A	11: 99,429,579 (GRCm39)	T332S	probably damaging	Het
Lrrc9	T	C	12: 72,506,767 (GRCm39)	F348S	probably damaging	Het
Lrtm2	T	C	6: 119,297,934 (GRCm39)	I36V	probably benign	Het
Lsm10	T	C	4: 125,991,860 (GRCm39)	L72P	probably damaging	Het
Mab21l3	T	A	3: 101,742,519 (GRCm39)	S14C	possibly damaging	Het
Map2k4	T	C	11: 65,581,569 (GRCm39)	K381R	probably benign	Het
Mcidas	A	G	13: 113,130,915 (GRCm39)	D80G	probably damaging	Het
Med23	A	G	10: 24,750,469 (GRCm39)	M99V	probably benign	Het
Mga	A	G	2: 119,778,656 (GRCm39)	D2067G	probably benign	Het
Ms4a19	T	A	19: 11,119,775 (GRCm39)	T52S	possibly damaging	Het
Msc	G	T	1: 14,825,707 (GRCm39)	P89Q	probably benign	Het
Nalf1	C	A	8: 9,821,006 (GRCm39)	A5S	probably damaging	Het
Or14c44	A	G	7: 86,062,430 (GRCm39)	I287V	probably benign	Het
Or2d3c	A	T	7: 106,526,564 (GRCm39)	I34N	possibly damaging	Het
Or5t7	A	T	2: 86,507,494 (GRCm39)	L61Q	probably damaging	Het
Plekhg6	T	C	6: 125,340,023 (GRCm39)	D779G	probably damaging	Het
Pnpla2	C	A	7: 141,035,331 (GRCm39)	Y44*	probably null	Het
Ppp1r17	T	A	6: 56,003,524 (GRCm39)	D112E	probably damaging	Het
Prdm2	A	G	4: 142,861,478 (GRCm39)	I604T	probably damaging	Het
Prkce	A	G	17: 86,781,877 (GRCm39)	Y182C	probably damaging	Het
Prokr2	G	A	2: 132,182,790 (GRCm39)	S189F	possibly damaging	Het
Qser1	A	T	2: 104,618,164 (GRCm39)	S793T	probably benign	Het
Reck	T	C	4: 43,943,301 (GRCm39)	F951S	probably benign	Het
Rev3l	T	C	10: 39,697,458 (GRCm39)	S652P	probably benign	Het
Rtl1	A	C	12: 109,558,884 (GRCm39)	L985R	probably damaging	Het
Sardh	T	C	2: 27,120,869 (GRCm39)	E385G	possibly damaging	Het
Sfmbt1	G	T	14: 30,519,599 (GRCm39)	W440L	possibly damaging	Het
Slc4a7	T	A	14: 14,772,541 (GRCm38)	C683*	probably null	Het
Slc51a	A	G	16: 32,298,517 (GRCm39)	L80P	possibly damaging	Het
Slco3a1	C	A	7: 74,154,037 (GRCm39)	L178F	probably damaging	Het
Spata6	T	A	4: 111,636,389 (GRCm39)	C227S	possibly damaging	Het
Tbc1d30	A	T	10: 121,103,366 (GRCm39)	Y555*	probably null	Het
Tcf7l2	A	G	19: 55,731,517 (GRCm39)	Q90R	probably benign	Het
Tff3	A	C	17: 31,346,423 (GRCm39)	S50A	probably benign	Het
Tnrc6c	T	C	11: 117,630,720 (GRCm39)	M1027T	probably benign	Het
Ttc12	A	G	9: 49,351,680 (GRCm39)	F606L	probably benign	Het
Uqcc3	G	A	19: 8,858,090 (GRCm39)	Q34*	probably null	Het
Veph1	T	A	3: 66,151,959 (GRCm39)	I157F	probably damaging	Het
Vmn2r14	G	A	5: 109,368,428 (GRCm39)	T188I	probably damaging	Het
Vmn2r67	A	G	7: 84,785,788 (GRCm39)	I739T	probably benign	Het
Vmn2r68	A	G	7: 84,882,993 (GRCm39)	F253S	probably benign	Het
Vmn2r74	T	C	7: 85,606,624 (GRCm39)	I241V	probably benign	Het
Vmn2r97	A	G	17: 19,149,368 (GRCm39)	E252G	probably benign	Het
Vps13b	T	C	15: 35,455,200 (GRCm39)	V703A	possibly damaging	Het
Vps25	T	A	11: 101,149,623 (GRCm39)	L149Q	probably damaging	Het
Xirp1	T	C	9: 119,845,950 (GRCm39)	T978A	probably benign	Het
Xpnpep1	T	A	19: 52,993,248 (GRCm39)	I360F	probably benign	Het
Zfpm1	C	T	8: 123,061,308 (GRCm39)	T291M	probably benign	Het
Zkscan8	A	G	13: 21,710,702 (GRCm39)	V136A	probably benign	Het
Zscan18	A	G	7: 12,505,612 (GRCm39)	Y592H	probably damaging	Het

Other mutations in Lrrn4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00333:Lrrn4	APN	2	132,712,737 (GRCm39)	missense	probably damaging	1.00
IGL00661:Lrrn4	APN	2	132,712,588 (GRCm39)	missense	probably benign	0.08
IGL01542:Lrrn4	APN	2	132,721,392 (GRCm39)	missense	probably benign
IGL01584:Lrrn4	APN	2	132,719,996 (GRCm39)	missense	probably damaging	1.00
IGL01723:Lrrn4	APN	2	132,711,981 (GRCm39)	missense	possibly damaging	0.79
R0270:Lrrn4	UTSW	2	132,712,639 (GRCm39)	missense	probably benign	0.01
R0348:Lrrn4	UTSW	2	132,712,363 (GRCm39)	missense	probably benign	0.02
R0400:Lrrn4	UTSW	2	132,719,940 (GRCm39)	missense	probably benign	0.12
R0701:Lrrn4	UTSW	2	132,712,080 (GRCm39)	missense	probably benign	0.02
R1465:Lrrn4	UTSW	2	132,713,995 (GRCm39)	missense	probably damaging	1.00
R1465:Lrrn4	UTSW	2	132,713,995 (GRCm39)	missense	probably damaging	1.00
R1664:Lrrn4	UTSW	2	132,711,886 (GRCm39)	missense	probably damaging	1.00
R1987:Lrrn4	UTSW	2	132,712,363 (GRCm39)	missense	probably benign	0.02
R3409:Lrrn4	UTSW	2	132,721,781 (GRCm39)	missense	unknown
R3743:Lrrn4	UTSW	2	132,711,786 (GRCm39)	splice site	probably null
R4678:Lrrn4	UTSW	2	132,721,488 (GRCm39)	missense	probably benign	0.16
R5770:Lrrn4	UTSW	2	132,714,076 (GRCm39)	missense	probably damaging	1.00
R6438:Lrrn4	UTSW	2	132,712,062 (GRCm39)	missense	probably damaging	1.00
R6511:Lrrn4	UTSW	2	132,712,246 (GRCm39)	missense	probably benign	0.06
R6880:Lrrn4	UTSW	2	132,714,032 (GRCm39)	missense	probably damaging	0.96
R7132:Lrrn4	UTSW	2	132,721,613 (GRCm39)	nonsense	probably null
R7273:Lrrn4	UTSW	2	132,721,749 (GRCm39)	missense	unknown
R7424:Lrrn4	UTSW	2	132,711,663 (GRCm39)	missense	possibly damaging	0.90
R7710:Lrrn4	UTSW	2	132,721,451 (GRCm39)	missense	probably benign	0.00
R7980:Lrrn4	UTSW	2	132,720,096 (GRCm39)	missense	probably damaging	1.00
R8133:Lrrn4	UTSW	2	132,719,934 (GRCm39)	missense	probably damaging	1.00
R8229:Lrrn4	UTSW	2	132,711,807 (GRCm39)	missense	probably damaging	1.00
R8489:Lrrn4	UTSW	2	132,721,364 (GRCm39)	missense	probably benign	0.20
R8956:Lrrn4	UTSW	2	132,714,011 (GRCm39)	missense	probably damaging	1.00
R9337:Lrrn4	UTSW	2	132,712,552 (GRCm39)	missense	probably benign	0.11

Predicted Primers

PCR Primer
(F):5'- TGGACGAGCACTGATGTGTC -3'
(R):5'- GCTAGTTTATAGTCCTTCCAGGGC -3'

Sequencing Primer
(F):5'- GTGGTATCCTCCCCACTGAGAC -3'
(R):5'- GTCCTTCCAGGGCTCTGC -3'

Posted On

2022-04-18