Mutagenetix > Incidental Mutation

Incidental Mutation 'R9343:Scgn'

707638

Institutional Source

Beutler Lab

Gene Symbol

Scgn

Ensembl Gene

ENSMUSG00000021337

Gene Name

secretagogin, EF-hand calcium binding protein

Synonyms

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.065) question?

Stock #

R9343 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

24137439-24175197 bp(-) (GRCm39)

Type of Mutation

critical splice acceptor site

DNA Base Change (assembly)

T to A at 24173829 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000021770 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021770] [ENSMUST00000021770] [ENSMUST00000021770]

AlphaFold

Q91WD9

Predicted Effect

probably null
Transcript: ENSMUST00000021770

SMART Domains

Protein: ENSMUSP00000021770
Gene: ENSMUSG00000021337

Domain	Start	End	E-Value	Type
EFh	16	44	3.97e1	SMART
Blast:EFh	62	90	6e-6	BLAST
EFh	109	137	8.63e-6	SMART
EFh	153	181	1.74e-1	SMART
EFh	201	229	4.28e0	SMART
EFh	244	273	7.79e0	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000021770

SMART Domains

Protein: ENSMUSP00000021770
Gene: ENSMUSG00000021337

Domain	Start	End	E-Value	Type
EFh	16	44	3.97e1	SMART
Blast:EFh	62	90	6e-6	BLAST
EFh	109	137	8.63e-6	SMART
EFh	153	181	1.74e-1	SMART
EFh	201	229	4.28e0	SMART
EFh	244	273	7.79e0	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000021770

SMART Domains

Protein: ENSMUSP00000021770
Gene: ENSMUSG00000021337

Domain	Start	End	E-Value	Type
EFh	16	44	3.97e1	SMART
Blast:EFh	62	90	6e-6	BLAST
EFh	109	137	8.63e-6	SMART
EFh	153	181	1.74e-1	SMART
EFh	201	229	4.28e0	SMART
EFh	244	273	7.79e0	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The encoded protein is a secreted calcium-binding protein which is found in the cytoplasm. It is related to calbindin D-28K and calretinin. This protein is thought to be involved in KCL-stimulated calcium flux and cell proliferation. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 46 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acat2	T	C	17: 13,167,538 (GRCm39)	N166S	probably damaging	Het
Atp8b2	A	T	3: 89,855,811 (GRCm39)	F446I	possibly damaging	Het
Cacna2d3	A	T	14: 28,704,315 (GRCm39)	M822K	possibly damaging	Het
Caskin1	A	G	17: 24,723,447 (GRCm39)	E745G	probably damaging	Het
Clec4a2	G	T	6: 123,104,955 (GRCm39)	A82S	probably benign	Het
Col5a3	T	C	9: 20,704,909 (GRCm39)	N749S	unknown	Het
Col9a2	T	A	4: 120,911,483 (GRCm39)	M608K	probably benign	Het
Cope	T	C	8: 70,761,228 (GRCm39)		probably null	Het
Dennd2d	T	A	3: 106,397,730 (GRCm39)		probably null	Het
Dpys	T	C	15: 39,656,748 (GRCm39)	T440A	possibly damaging	Het
Fam186b	G	A	15: 99,177,616 (GRCm39)	A570V	probably damaging	Het
Fbln5	G	A	12: 101,737,551 (GRCm39)	T152I	probably damaging	Het
Gm16503	A	T	4: 147,625,508 (GRCm39)	M1L	unknown	Het
Gm9195	A	G	14: 72,717,500 (GRCm39)	S278P	probably damaging	Het
Hmcn2	A	G	2: 31,279,359 (GRCm39)	N1787S	probably benign	Het
Klhl33	A	G	14: 51,133,903 (GRCm39)		probably null	Het
Lrrk2	A	G	15: 91,584,618 (GRCm39)	D345G	probably benign	Het
Man2b2	A	G	5: 36,975,951 (GRCm39)	L368P	probably damaging	Het
Med23	T	A	10: 24,788,705 (GRCm39)	S1371T	probably benign	Het
Mllt3	T	A	4: 87,792,168 (GRCm39)	E109D	possibly damaging	Het
Myom2	G	A	8: 15,134,633 (GRCm39)	D479N	probably damaging	Het
Or52r1c	A	T	7: 102,735,324 (GRCm39)	R195*	probably null	Het
Pcdhga10	G	T	18: 37,880,532 (GRCm39)	A98S	probably benign	Het
Pde8a	A	T	7: 80,950,427 (GRCm39)	Q221H	probably benign	Het
Pkd1l1	T	C	11: 8,786,399 (GRCm39)	H2335R		Het
Pkd1l1	T	A	11: 8,911,305 (GRCm39)	D324V		Het
Pou2f2	G	A	7: 24,794,277 (GRCm39)	T363I	possibly damaging	Het
Prlr	A	G	15: 10,328,988 (GRCm39)	I488V	probably benign	Het
Psmd2	T	C	16: 20,475,441 (GRCm39)		probably null	Het
Rbm7	T	C	9: 48,400,969 (GRCm39)	D253G	probably damaging	Het
Ros1	A	G	10: 51,972,116 (GRCm39)		probably null	Het
S1pr3	G	T	13: 51,573,553 (GRCm39)	V245L	probably damaging	Het
Sacs	A	G	14: 61,446,219 (GRCm39)	D2755G	probably benign	Het
Sh3rf3	A	G	10: 58,966,802 (GRCm39)	K715E	probably damaging	Het
Sox18	T	C	2: 181,312,231 (GRCm39)	E300G	probably damaging	Het
Spata31f3	TCATTCAACACTTTGGAGAGCTCTGAACTCTGGCCATTCAACACTTTGGAGAGCTCTGAACTCTGGCCATTCAACACTTTGGAGAGCTCTGAACTCTGGTCATTCAACACTTTGG	TCATTCAACACTTTGGAGAGCTCTGAACTCTGGCCATTCAACACTTTGGAGAGCTCTGAACTCTGGTCATTCAACACTTTGG	4: 42,871,823 (GRCm39)		probably benign	Het
Spef2	T	A	15: 9,713,190 (GRCm39)	N394I	probably damaging	Het
Strn4	T	C	7: 16,573,827 (GRCm39)	F759L	probably damaging	Het
Tas2r144	A	T	6: 42,193,066 (GRCm39)	I269F	probably benign	Het
Tpcn1	T	C	5: 120,678,737 (GRCm39)	D606G	possibly damaging	Het
Trh	A	G	6: 92,220,823 (GRCm39)	I13T	probably benign	Het
Umodl1	T	C	17: 31,217,701 (GRCm39)	I1169T	possibly damaging	Het
Vwa3b	G	A	1: 37,153,615 (GRCm39)	D486N	probably damaging	Het
Wars2	T	C	3: 99,094,846 (GRCm39)	L47P	probably benign	Het
Zbtb14	A	G	17: 69,695,576 (GRCm39)	S425G	probably damaging	Het
Zdhhc16	T	C	19: 41,926,549 (GRCm39)	S111P	probably benign	Het

Other mutations in Scgn

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01553:Scgn	APN	13	24,143,662 (GRCm39)	missense	probably benign
IGL02109:Scgn	APN	13	24,137,948 (GRCm39)	missense	possibly damaging	0.80
R0865:Scgn	UTSW	13	24,146,102 (GRCm39)	splice site	probably null
R1761:Scgn	UTSW	13	24,143,689 (GRCm39)	missense	probably damaging	1.00
R1916:Scgn	UTSW	13	24,162,808 (GRCm39)	missense	probably damaging	1.00
R2026:Scgn	UTSW	13	24,175,047 (GRCm39)	start gained	probably benign
R4940:Scgn	UTSW	13	24,173,807 (GRCm39)	missense	probably benign
R5008:Scgn	UTSW	13	24,174,958 (GRCm39)	missense	probably damaging	0.97
R6579:Scgn	UTSW	13	24,143,717 (GRCm39)	missense	probably damaging	1.00
R7191:Scgn	UTSW	13	24,165,476 (GRCm39)	missense	probably benign	0.00
R7455:Scgn	UTSW	13	24,150,848 (GRCm39)	missense	probably benign	0.06
R7571:Scgn	UTSW	13	24,137,897 (GRCm39)	missense	probably damaging	1.00
R9341:Scgn	UTSW	13	24,173,829 (GRCm39)	critical splice acceptor site	probably null
R9473:Scgn	UTSW	13	24,143,731 (GRCm39)	critical splice acceptor site	probably null
R9559:Scgn	UTSW	13	24,137,921 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGGTCATACGGGATTAAGGTTC -3'
(R):5'- ACCCCTAGACATGCTCACATTT -3'

Sequencing Primer
(F):5'- GGTCATACGGGATTAAGGTTCAAATC -3'
(R):5'- ACATGCCTGTGATCCTAGCAATTG -3'

Posted On

2022-04-18