Mutagenetix > Incidental Mutation

Incidental Mutation 'R9345:Kif20a'

707779

Institutional Source

Beutler Lab

Gene Symbol

Kif20a

Ensembl Gene

ENSMUSG00000003779

Gene Name

kinesin family member 20A

Synonyms

Rabkinesin-6, Rab6kifl

MMRRC Submission

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R9345 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

34757677-34766330 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 34759779 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 58 (E58G)

Ref Sequence

ENSEMBL: ENSMUSP00000132659 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000003876] [ENSMUST00000025228] [ENSMUST00000097626] [ENSMUST00000115765] [ENSMUST00000115766] [ENSMUST00000133181] [ENSMUST00000166044] [ENSMUST00000167161]

AlphaFold

P97329

Predicted Effect

probably benign
Transcript: ENSMUST00000003876

SMART Domains

Protein: ENSMUSP00000003876
Gene: ENSMUSG00000003778

Domain	Start	End	E-Value	Type
Blast:SANT	15	74	4e-33	BLAST
coiled coil region	97	132	N/A	INTRINSIC
low complexity region	148	161	N/A	INTRINSIC
low complexity region	265	282	N/A	INTRINSIC
low complexity region	323	339	N/A	INTRINSIC
low complexity region	363	378	N/A	INTRINSIC
low complexity region	386	404	N/A	INTRINSIC
low complexity region	505	516	N/A	INTRINSIC
low complexity region	759	773	N/A	INTRINSIC
BROMO	778	886	7.59e-40	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000025228

SMART Domains

Protein: ENSMUSP00000025228
Gene: ENSMUSG00000024370

Domain	Start	End	E-Value	Type
Pfam:APC8	22	152	1.9e-42	PFAM
Blast:TPR	175	202	4e-10	BLAST
TPR	263	296	4.21e1	SMART
TPR	331	364	1.74e-4	SMART
TPR	365	398	1.83e-3	SMART
TPR	399	432	1.37e-2	SMART
TPR	433	466	8.97e0	SMART
TPR	510	543	1.82e1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000097626

SMART Domains

Protein: ENSMUSP00000095229
Gene: ENSMUSG00000003778

Domain	Start	End	E-Value	Type
Blast:SANT	15	74	3e-33	BLAST
coiled coil region	97	132	N/A	INTRINSIC
low complexity region	148	161	N/A	INTRINSIC
low complexity region	250	266	N/A	INTRINSIC
low complexity region	290	305	N/A	INTRINSIC
low complexity region	313	331	N/A	INTRINSIC
low complexity region	432	443	N/A	INTRINSIC
low complexity region	686	700	N/A	INTRINSIC
BROMO	705	813	7.59e-40	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000115765

SMART Domains

Protein: ENSMUSP00000111431
Gene: ENSMUSG00000003778

Domain	Start	End	E-Value	Type
Blast:SANT	15	74	5e-33	BLAST
coiled coil region	97	132	N/A	INTRINSIC
low complexity region	148	161	N/A	INTRINSIC
low complexity region	265	282	N/A	INTRINSIC
low complexity region	323	339	N/A	INTRINSIC
low complexity region	363	378	N/A	INTRINSIC
low complexity region	386	404	N/A	INTRINSIC
low complexity region	505	516	N/A	INTRINSIC
low complexity region	759	773	N/A	INTRINSIC
BROMO	778	886	7.59e-40	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000115766

SMART Domains

Protein: ENSMUSP00000111432
Gene: ENSMUSG00000003778

Domain	Start	End	E-Value	Type
Blast:SANT	15	74	4e-33	BLAST
coiled coil region	97	132	N/A	INTRINSIC
low complexity region	148	161	N/A	INTRINSIC
low complexity region	265	282	N/A	INTRINSIC
low complexity region	323	337	N/A	INTRINSIC
low complexity region	435	446	N/A	INTRINSIC
low complexity region	689	703	N/A	INTRINSIC
BROMO	708	816	7.59e-40	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000133181

SMART Domains

Protein: ENSMUSP00000122420
Gene: ENSMUSG00000024370

Domain	Start	End	E-Value	Type
low complexity region	2	24	N/A	INTRINSIC
Pfam:ANAPC8	28	151	6.9e-31	PFAM
Blast:TPR	175	202	4e-10	BLAST
TPR	263	296	4.21e1	SMART
TPR	331	364	1.74e-4	SMART
TPR	365	398	1.83e-3	SMART
TPR	399	432	1.37e-2	SMART
TPR	433	466	8.97e0	SMART
TPR	510	543	1.82e1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000166044
AA Change: E58G

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000132659
Gene: ENSMUSG00000003779
AA Change: E58G

Domain	Start	End	E-Value	Type
KISc	61	514	3.95e-141	SMART
coiled coil region	559	760	N/A	INTRINSIC
low complexity region	831	842	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000167161
AA Change: E58G

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000130045
Gene: ENSMUSG00000003779
AA Change: E58G

Domain	Start	End	E-Value	Type
KISc	61	514	3.95e-141	SMART
coiled coil region	559	760	N/A	INTRINSIC
low complexity region	831	842	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc2	A	T	19: 43,807,869 (GRCm39)	I837F	probably damaging	Het
Acot3	A	G	12: 84,103,866 (GRCm39)	Y225C	probably benign	Het
Adam17	A	G	12: 21,378,056 (GRCm39)	V710A	probably damaging	Het
Ank3	A	G	10: 69,761,899 (GRCm39)		probably benign	Het
Ankrd60	T	A	2: 173,410,610 (GRCm39)	K303N	possibly damaging	Het
Atp10b	T	A	11: 43,094,024 (GRCm39)	S523T	probably damaging	Het
Bptf	A	G	11: 106,971,588 (GRCm39)	V973A	possibly damaging	Het
Ccdc24	C	T	4: 117,729,691 (GRCm39)	W9*	probably null	Het
Ccdc82	A	G	9: 13,281,891 (GRCm39)	T439A	probably benign	Het
Ccne2	C	A	4: 11,199,420 (GRCm39)	Q274K	probably benign	Het
Clec11a	T	C	7: 43,956,189 (GRCm39)	M1V	probably null	Het
Col12a1	T	A	9: 79,541,017 (GRCm39)	Y2370F	probably benign	Het
Cyp4a32	C	T	4: 115,467,699 (GRCm39)	H228Y	probably benign	Het
Dchs2	G	A	3: 83,036,101 (GRCm39)	G283S	probably benign	Het
Dis3	T	C	14: 99,318,814 (GRCm39)	T659A	probably damaging	Het
Dock5	T	C	14: 68,060,071 (GRCm39)	D456G	possibly damaging	Het
Efr3b	T	A	12: 4,033,409 (GRCm39)	K249*	probably null	Het
Emilin2	C	T	17: 71,581,539 (GRCm39)	V396I	probably benign	Het
Fam186b	G	A	15: 99,177,616 (GRCm39)	A570V	probably damaging	Het
Fasn	A	T	11: 120,706,735 (GRCm39)	S947T	probably benign	Het
Fryl	C	T	5: 73,207,754 (GRCm39)	C2472Y	probably benign	Het
Gm3159	A	T	14: 4,398,488 (GRCm38)	I60L	probably benign	Het
Gm3402	A	T	5: 146,451,330 (GRCm39)	N63Y	probably damaging	Het
Gm49355	C	T	14: 12,296,641 (GRCm38)		probably benign	Het
Grm2	A	G	9: 106,528,287 (GRCm39)	L199P	probably damaging	Het
Hck	T	A	2: 152,992,904 (GRCm39)	H470Q	probably benign	Het
Hsd17b4	T	C	18: 50,299,981 (GRCm39)	Y413H	probably benign	Het
Ice1	A	G	13: 70,740,758 (GRCm39)	F80L		Het
Ifrd1	G	A	12: 40,267,458 (GRCm39)	P38S	possibly damaging	Het
Itgad	A	G	7: 127,788,479 (GRCm39)	T431A	probably benign	Het
Kcnd3	A	T	3: 105,566,003 (GRCm39)	I395F	probably damaging	Het
Kras	A	T	6: 145,192,442 (GRCm39)	D30E	probably benign	Het
Lmbrd1	C	T	1: 24,724,593 (GRCm39)	A59V	probably damaging	Het
Lrrc20	T	C	10: 61,383,890 (GRCm39)	L99P	probably damaging	Het
Mfn2	T	C	4: 147,966,649 (GRCm39)	D514G	probably benign	Het
Myl2	A	G	5: 122,242,902 (GRCm39)	E96G	probably damaging	Het
Nppb	T	G	4: 148,070,518 (GRCm39)	L29R	probably damaging	Het
Or51f1e	C	T	7: 102,747,713 (GRCm39)	A255V	possibly damaging	Het
Or5ak22	A	G	2: 85,230,097 (GRCm39)	V260A	probably benign	Het
Pcdhb14	A	G	18: 37,581,281 (GRCm39)	H129R	probably damaging	Het
Pex11g	T	C	8: 3,509,363 (GRCm39)	N188S	possibly damaging	Het
Pla2g3	A	G	11: 3,442,170 (GRCm39)	D410G	probably benign	Het
Pnma1	C	A	12: 84,194,232 (GRCm39)	W157L	probably benign	Het
Pofut2	A	G	10: 77,103,090 (GRCm39)	Y362C	probably damaging	Het
Ppp1r14c	C	A	10: 3,373,567 (GRCm39)	S126*	probably null	Het
Psg27	T	C	7: 18,299,081 (GRCm39)	H80R	probably benign	Het
Rere	T	A	4: 150,554,770 (GRCm39)	V156D	probably damaging	Het
Rsf1	CGGC	CGGCGGCGGGGGC	7: 97,229,139 (GRCm39)		probably benign	Het
Samd8	G	A	14: 21,830,227 (GRCm39)	V281I	probably benign	Het
Scarf1	A	G	11: 75,404,401 (GRCm39)		probably benign	Het
Scgb2b27	A	G	7: 33,712,722 (GRCm39)	L40P	probably benign	Het
Sdk1	A	T	5: 142,147,708 (GRCm39)	H1780L	probably benign	Het
Slc10a6	T	C	5: 103,754,521 (GRCm39)	T337A	probably benign	Het
Slc44a4	A	T	17: 35,140,219 (GRCm39)	D208V	probably benign	Het
Slco1c1	G	T	6: 141,493,553 (GRCm39)	C363F	probably benign	Het
Smg5	T	A	3: 88,261,848 (GRCm39)	L707Q	probably damaging	Het
Supt5	A	T	7: 28,016,412 (GRCm39)	D789E	probably benign	Het
Tbcd	A	G	11: 121,464,648 (GRCm39)	Y561C	probably damaging	Het
Tectb	T	C	19: 55,183,097 (GRCm39)	L316P	probably benign	Het
Thrsp	T	C	7: 97,066,326 (GRCm39)	T129A	possibly damaging	Het
Tnpo3	T	C	6: 29,558,851 (GRCm39)	H693R	probably benign	Het
Trim54	T	G	5: 31,294,478 (GRCm39)	D335E	probably benign	Het
Tsr1	A	G	11: 74,790,126 (GRCm39)	D107G	probably benign	Het
Ttc41	A	T	10: 86,595,089 (GRCm39)	E954D	probably damaging	Het
Ttn	A	G	2: 76,538,595 (GRCm39)	L34701P	possibly damaging	Het
Vmn1r119	A	C	7: 20,746,034 (GRCm39)	V116G	probably damaging	Het
Vmn1r219	G	A	13: 23,346,769 (GRCm39)		probably benign	Het
Zc3h12c	T	A	9: 52,028,010 (GRCm39)	M470L	probably benign	Het
Zmynd8	T	C	2: 165,654,668 (GRCm39)	K615E	possibly damaging	Het

Other mutations in Kif20a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02448:Kif20a	APN	18	34,761,507 (GRCm39)	missense	possibly damaging	0.49
IGL02654:Kif20a	APN	18	34,765,076 (GRCm39)	missense	probably damaging	1.00
IGL02739:Kif20a	APN	18	34,761,996 (GRCm39)	nonsense	probably null
R0600:Kif20a	UTSW	18	34,762,262 (GRCm39)	missense	probably damaging	1.00
R0748:Kif20a	UTSW	18	34,761,241 (GRCm39)	splice site	probably benign
R0856:Kif20a	UTSW	18	34,764,271 (GRCm39)	missense	probably benign
R1278:Kif20a	UTSW	18	34,759,830 (GRCm39)	missense	probably benign	0.00
R1752:Kif20a	UTSW	18	34,764,634 (GRCm39)	missense	possibly damaging	0.82
R2036:Kif20a	UTSW	18	34,761,515 (GRCm39)	missense	possibly damaging	0.91
R2143:Kif20a	UTSW	18	34,758,657 (GRCm39)	missense	possibly damaging	0.55
R2144:Kif20a	UTSW	18	34,758,657 (GRCm39)	missense	possibly damaging	0.55
R4231:Kif20a	UTSW	18	34,765,091 (GRCm39)	missense	probably benign
R4372:Kif20a	UTSW	18	34,762,531 (GRCm39)	missense	probably damaging	1.00
R4426:Kif20a	UTSW	18	34,764,994 (GRCm39)	missense	probably damaging	1.00
R4584:Kif20a	UTSW	18	34,765,664 (GRCm39)	missense	probably damaging	1.00
R5524:Kif20a	UTSW	18	34,763,678 (GRCm39)	critical splice donor site	probably null
R5867:Kif20a	UTSW	18	34,765,468 (GRCm39)	missense	probably benign	0.01
R5869:Kif20a	UTSW	18	34,765,468 (GRCm39)	missense	probably benign	0.01
R5949:Kif20a	UTSW	18	34,765,468 (GRCm39)	missense	probably benign	0.01
R5958:Kif20a	UTSW	18	34,765,468 (GRCm39)	missense	probably benign	0.01
R5959:Kif20a	UTSW	18	34,765,468 (GRCm39)	missense	probably benign	0.01
R5967:Kif20a	UTSW	18	34,763,580 (GRCm39)	missense	probably benign	0.10
R5969:Kif20a	UTSW	18	34,765,468 (GRCm39)	missense	probably benign	0.01
R6175:Kif20a	UTSW	18	34,761,199 (GRCm39)	missense	probably damaging	0.98
R6490:Kif20a	UTSW	18	34,762,543 (GRCm39)	missense	possibly damaging	0.84
R6694:Kif20a	UTSW	18	34,758,579 (GRCm39)	missense	probably damaging	0.98
R6866:Kif20a	UTSW	18	34,761,546 (GRCm39)	missense	probably benign	0.10
R7129:Kif20a	UTSW	18	34,765,588 (GRCm39)	missense	probably benign	0.00
R7217:Kif20a	UTSW	18	34,762,613 (GRCm39)	missense	probably benign	0.14
R7397:Kif20a	UTSW	18	34,760,729 (GRCm39)	missense	probably damaging	1.00
R7585:Kif20a	UTSW	18	34,758,591 (GRCm39)	missense	probably benign	0.03
R8302:Kif20a	UTSW	18	34,765,030 (GRCm39)	missense	probably damaging	1.00
R8306:Kif20a	UTSW	18	34,761,444 (GRCm39)	missense	probably benign	0.00
R8325:Kif20a	UTSW	18	34,759,975 (GRCm39)	missense	possibly damaging	0.68
R8697:Kif20a	UTSW	18	34,761,584 (GRCm39)	missense	probably benign	0.19
R9022:Kif20a	UTSW	18	34,760,898 (GRCm39)	missense	probably benign	0.00
R9331:Kif20a	UTSW	18	34,762,562 (GRCm39)	nonsense	probably null
R9716:Kif20a	UTSW	18	34,762,228 (GRCm39)	missense	possibly damaging	0.66
X0027:Kif20a	UTSW	18	34,758,583 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- ATTGCAGGGCAGTGTTGGAC -3'
(R):5'- TGCAGCACAAGGGTTTCTG -3'

Sequencing Primer
(F):5'- CAGGGAAGGGTAACAGAATTCATGTG -3'
(R):5'- CAGCACAAGGGTTTCTGTATTC -3'

Posted On

2022-04-18