Mutagenetix > Incidental Mutation

Incidental Mutation 'R9356:Mindy1'

708398

Institutional Source

Beutler Lab

Gene Symbol

Mindy1

Ensembl Gene

ENSMUSG00000038712

Gene Name

MINDY lysine 48 deubiquitinase 1

Synonyms

NF-E2 inducible protein, cI-40, Fam63a, 1810005H09Rik, 4930504E06Rik

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9356 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

95189237-95203477 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 95202590 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Phenylalanine at position 394 (L394F)

Ref Sequence

ENSEMBL: ENSMUSP00000102805 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000015846] [ENSMUST00000039537] [ENSMUST00000107183] [ENSMUST00000107187] [ENSMUST00000164406] [ENSMUST00000168223]

AlphaFold

Q76LS9

Predicted Effect

probably benign
Transcript: ENSMUST00000015846

SMART Domains

Protein: ENSMUSP00000015846
Gene: ENSMUSG00000015702

Domain	Start	End	E-Value	Type
ANX	58	110	1.48e-17	SMART
ANX	130	182	6.56e-10	SMART
ANX	212	264	1.52e-1	SMART
ANX	287	339	1.03e-11	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000039537

SMART Domains

Protein: ENSMUSP00000043910
Gene: ENSMUSG00000038712

Domain	Start	End	E-Value	Type
low complexity region	35	54	N/A	INTRINSIC
low complexity region	67	86	N/A	INTRINSIC
Pfam:DUF544	143	268	7.7e-51	PFAM
low complexity region	369	382	N/A	INTRINSIC
low complexity region	386	397	N/A	INTRINSIC
low complexity region	405	423	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000107183

SMART Domains

Protein: ENSMUSP00000102801
Gene: ENSMUSG00000015702

Domain	Start	End	E-Value	Type
ANX	58	110	1.48e-17	SMART
ANX	130	182	6.56e-10	SMART
ANX	212	264	1.52e-1	SMART
ANX	287	339	1.03e-11	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000107187
AA Change: L394F

PolyPhen 2 Score 0.201 (Sensitivity: 0.92; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000102805
Gene: ENSMUSG00000038712
AA Change: L394F

Domain	Start	End	E-Value	Type
low complexity region	35	54	N/A	INTRINSIC
low complexity region	67	86	N/A	INTRINSIC
Pfam:DUF544	143	266	7e-42	PFAM
low complexity region	369	382	N/A	INTRINSIC
low complexity region	400	406	N/A	INTRINSIC
low complexity region	414	432	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000164406

SMART Domains

Protein: ENSMUSP00000127424
Gene: ENSMUSG00000015702

Domain	Start	End	E-Value	Type
ANX	58	110	1.48e-17	SMART
ANX	130	182	6.56e-10	SMART
ANX	212	264	1.52e-1	SMART
ANX	287	339	1.03e-11	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000168223

SMART Domains

Protein: ENSMUSP00000127839
Gene: ENSMUSG00000038712

Domain	Start	End	E-Value	Type
low complexity region	35	54	N/A	INTRINSIC
low complexity region	67	86	N/A	INTRINSIC
Pfam:DUF544	143	268	7.7e-51	PFAM
low complexity region	369	382	N/A	INTRINSIC
low complexity region	386	397	N/A	INTRINSIC
low complexity region	405	423	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca13	G	A	11: 9,206,305 (GRCm39)	V202M	probably benign	Het
Ago3	A	T	4: 126,264,144 (GRCm39)	I354N	probably damaging	Het
Ankrd50	A	T	3: 38,510,236 (GRCm39)	D710E	probably damaging	Het
Apba2	A	T	7: 64,345,421 (GRCm39)	N204Y	probably damaging	Het
Arrdc4	A	G	7: 68,394,627 (GRCm39)	V139A	possibly damaging	Het
Baz1b	A	G	5: 135,239,653 (GRCm39)	E251G	probably benign	Het
Calcr	T	C	6: 3,687,408 (GRCm39)	D530G	probably benign	Het
Chrna7	A	T	7: 62,757,437 (GRCm39)	V154E	probably damaging	Het
Cldn15	T	C	5: 136,996,968 (GRCm39)	V3A	probably benign	Het
Csmd1	A	T	8: 16,252,069 (GRCm39)	L929Q	probably damaging	Het
Ctss	A	C	3: 95,454,120 (GRCm39)	H224P	possibly damaging	Het
Cyp4a12a	C	A	4: 115,185,915 (GRCm39)	H408N	probably benign	Het
Gm10549	C	T	18: 33,597,375 (GRCm39)	P54S	unknown	Het
Gpr162	T	C	6: 124,838,297 (GRCm39)	M118V	possibly damaging	Het
Ifnar1	C	T	16: 91,292,367 (GRCm39)	P207L	probably benign	Het
Igfn1	A	T	1: 135,899,825 (GRCm39)	C495*	probably null	Het
Ints9	T	C	14: 65,269,770 (GRCm39)	S487P	probably benign	Het
Jmjd4	T	A	11: 59,345,761 (GRCm39)	D280E	probably benign	Het
Krtap1-4	G	A	11: 99,474,169 (GRCm39)	Q96*	probably null	Het
Ksr2	T	A	5: 117,827,706 (GRCm39)	I495N	probably benign	Het
Lama2	T	A	10: 27,088,186 (GRCm39)	N864Y	probably damaging	Het
Lce1f	TCCACAGCAGCCACTGCTGCCACCACTGCTGCCACAGCAGCCACTGCTGCCACCACTGCTGCCACAGCAGCCACTGCTGCCACCACTGCT	TCCACAGCAGCCACTGCTGCCACCACTGCTGCCACAGCAGCCACTGCTGCCACCACTGCT	3: 92,626,272 (GRCm39)		probably benign	Het
Lig4	A	G	8: 10,022,538 (GRCm39)	V414A	possibly damaging	Het
Lman2l	A	G	1: 36,467,415 (GRCm39)	F211S	probably damaging	Het
Lmtk3	A	G	7: 45,443,312 (GRCm39)	E665G	probably damaging	Het
Mdm4	G	A	1: 132,938,837 (GRCm39)	L86F	probably damaging	Het
Mfsd10	C	A	5: 34,794,048 (GRCm39)	E22*	probably null	Het
Mroh4	T	C	15: 74,482,760 (GRCm39)	M735V	probably benign	Het
Myo7a	T	A	7: 97,725,873 (GRCm39)	M1060L	probably benign	Het
Myo7b	C	A	18: 32,110,096 (GRCm39)	S1122I	probably damaging	Het
Nudt17	T	A	3: 96,613,688 (GRCm39)	R313S	probably damaging	Het
Or52n5	A	G	7: 104,588,373 (GRCm39)	I213M	probably benign	Het
Or5w15	T	A	2: 87,568,089 (GRCm39)	Q193L	probably benign	Het
Or6c65	T	G	10: 129,604,035 (GRCm39)	I223M	possibly damaging	Het
Or8h7	T	A	2: 86,720,605 (GRCm39)	M305L	probably benign	Het
Otogl	T	C	10: 107,617,890 (GRCm39)	Y1741C	probably damaging	Het
Pja2	A	G	17: 64,618,204 (GRCm39)	V65A	probably damaging	Het
Primpol	A	G	8: 47,043,318 (GRCm39)	V325A	probably benign	Het
Prss36	T	C	7: 127,545,697 (GRCm39)		probably benign	Het
Ptpn20	T	G	14: 33,352,865 (GRCm39)	Y201*	probably null	Het
Rundc3a	T	C	11: 102,292,890 (GRCm39)	S428P	probably damaging	Het
Rxra	T	A	2: 27,649,675 (GRCm39)	L460Q	probably damaging	Het
Sdsl	C	T	5: 120,597,948 (GRCm39)	V182M	probably damaging	Het
Slc14a2	A	C	18: 78,227,823 (GRCm39)	I226S	probably null	Het
Spam1	T	A	6: 24,800,565 (GRCm39)	C435S	probably damaging	Het
Spata31h1	T	C	10: 82,125,157 (GRCm39)	K2618E	possibly damaging	Het
Stbd1	A	G	5: 92,753,277 (GRCm39)	T256A	possibly damaging	Het
Ttc39c	T	A	18: 12,853,102 (GRCm39)		probably null	Het
Uba3	T	C	6: 97,161,811 (GRCm39)	D440G	probably benign	Het
Ythdf1	A	C	2: 180,553,998 (GRCm39)	S72R	probably benign	Het
Zfp770	T	C	2: 114,026,917 (GRCm39)	E384G	possibly damaging	Het
Zfp979	G	T	4: 147,698,358 (GRCm39)	T117K	probably damaging	Het

Other mutations in Mindy1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01301:Mindy1	APN	3	95,195,701 (GRCm39)	missense	probably damaging	1.00
IGL03380:Mindy1	APN	3	95,198,329 (GRCm39)	splice site	probably benign
ANU18:Mindy1	UTSW	3	95,195,701 (GRCm39)	missense	probably damaging	1.00
PIT4576001:Mindy1	UTSW	3	95,195,380 (GRCm39)	missense	probably benign	0.12
R4647:Mindy1	UTSW	3	95,190,054 (GRCm39)	unclassified	probably benign
R5076:Mindy1	UTSW	3	95,202,710 (GRCm39)	missense	probably benign	0.01
R5875:Mindy1	UTSW	3	95,202,125 (GRCm39)	missense	probably damaging	0.98
R5938:Mindy1	UTSW	3	95,201,067 (GRCm39)	missense	probably benign	0.18
R8112:Mindy1	UTSW	3	95,202,122 (GRCm39)	missense	probably damaging	1.00
R8318:Mindy1	UTSW	3	95,199,936 (GRCm39)	missense	probably damaging	0.98
R8692:Mindy1	UTSW	3	95,199,587 (GRCm39)	missense	probably damaging	1.00
R9357:Mindy1	UTSW	3	95,202,590 (GRCm39)	missense	probably benign	0.20
R9358:Mindy1	UTSW	3	95,202,590 (GRCm39)	missense	probably benign	0.20
R9683:Mindy1	UTSW	3	95,202,176 (GRCm39)	missense	probably benign	0.21
X0028:Mindy1	UTSW	3	95,202,206 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CGGGAACTGCATGCATTATTTTG -3'
(R):5'- TCCCTTGCCGACCAAAGAAG -3'

Sequencing Primer
(F):5'- GCCTGTTCATGTTATCCAGAAG -3'
(R):5'- AAGAAGGGCACGCTCACCTG -3'

Posted On

2022-04-18