Mutagenetix > Incidental Mutation

Incidental Mutation 'R9359:Wscd1'

708589

Institutional Source

Beutler Lab

Gene Symbol

Wscd1

Ensembl Gene

ENSMUSG00000020811

Gene Name

WSC domain containing 1

Synonyms

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9359 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

71640746-71680473 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 71650799 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 42 (L42P)

Ref Sequence

ENSEMBL: ENSMUSP00000021168 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021168] [ENSMUST00000108510] [ENSMUST00000108511] [ENSMUST00000150531]

AlphaFold

Q80XH4

Predicted Effect

possibly damaging
Transcript: ENSMUST00000021168
AA Change: L42P

PolyPhen 2 Score 0.946 (Sensitivity: 0.80; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000021168
Gene: ENSMUSG00000020811
AA Change: L42P

Domain	Start	End	E-Value	Type
transmembrane domain	17	36	N/A	INTRINSIC
low complexity region	100	114	N/A	INTRINSIC
WSC	139	231	8.72e-40	SMART
WSC	242	337	2.09e-28	SMART
Pfam:Sulfotransfer_1	413	525	1.6e-9	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000108510
AA Change: L42P

PolyPhen 2 Score 0.946 (Sensitivity: 0.80; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000104150
Gene: ENSMUSG00000020811
AA Change: L42P

Domain	Start	End	E-Value	Type
transmembrane domain	17	36	N/A	INTRINSIC
low complexity region	100	114	N/A	INTRINSIC
WSC	139	231	8.72e-40	SMART
WSC	242	337	2.09e-28	SMART
Pfam:Sulfotransfer_1	413	525	1.6e-9	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000108511
AA Change: L42P

PolyPhen 2 Score 0.946 (Sensitivity: 0.80; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000104151
Gene: ENSMUSG00000020811
AA Change: L42P

Domain	Start	End	E-Value	Type
transmembrane domain	17	36	N/A	INTRINSIC
low complexity region	100	114	N/A	INTRINSIC
WSC	139	231	8.72e-40	SMART
WSC	242	337	2.09e-28	SMART
Pfam:Sulfotransfer_1	413	525	1.6e-9	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000150531
AA Change: L42P

PolyPhen 2 Score 0.946 (Sensitivity: 0.80; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000123659
Gene: ENSMUSG00000020811
AA Change: L42P

Domain	Start	End	E-Value	Type
transmembrane domain	15	35	N/A	INTRINSIC

Meta Mutation Damage Score

0.1926

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.5%

Validation Efficiency

100% (45/45)

Allele List at MGI

Other mutations in this stock

Total: 47 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Angpt4	C	T	2: 151,780,892 (GRCm39)	T380M	probably damaging	Het
Ankrd50	A	T	3: 38,537,172 (GRCm39)	N60K	probably damaging	Het
Atp6v0a4	G	A	6: 38,059,048 (GRCm39)	T245I	probably benign	Het
Calcoco2	TCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTTCTCCCAGGAGGCCTTCTCTTCC	TCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTTCTCCCAGGAGGCCTTCTCTTCC	11: 95,990,862 (GRCm39)		probably null	Het
Cyp2j13	T	C	4: 95,950,170 (GRCm39)	D277G	probably damaging	Het
Def8	A	T	8: 124,185,105 (GRCm39)	I310F	probably benign	Het
Dmtf1	A	G	5: 9,171,927 (GRCm39)	L503S	possibly damaging	Het
Dock1	T	C	7: 134,770,125 (GRCm39)	V1795A	probably benign	Het
Dusp9	TAAAGCGGAGGCCAAAGCGGAGGCCAAAGCGGAGGCTAAAGCGGAGGCCAAAGCGGAGGCCAAAGCGGAGGCCAAAGCGGAGGCTAAAGCGGAGGCCAAAGCGGAGGCCAAAG	TAAAGCGGAGGCCAAAGCGGAGGCCAAAGCGGAGGCTAAAGCGGAGGCCAAAGCGGAGGCCAAAG	X: 72,684,217 (GRCm39)		probably benign	Het
Gabbr1	A	G	17: 37,381,605 (GRCm39)	T790A	probably damaging	Het
Glg1	C	T	8: 111,914,425 (GRCm39)	R453Q	probably benign	Het
Gm10549	C	T	18: 33,597,375 (GRCm39)	P54S	unknown	Het
Gpld1	G	A	13: 25,163,712 (GRCm39)	V502I	probably benign	Het
Ifnar1	C	T	16: 91,292,367 (GRCm39)	P207L	probably benign	Het
Inhba	A	G	13: 16,191,966 (GRCm39)	H29R	probably benign	Het
Insr	G	C	8: 3,208,717 (GRCm39)	P1248R	probably damaging	Het
Ipcef1	C	T	10: 6,840,663 (GRCm39)	D349N	probably damaging	Het
Itga4	T	A	2: 79,156,004 (GRCm39)	I990N	possibly damaging	Het
Malrd1	T	C	2: 15,618,988 (GRCm39)	V284A		Het
Maml2	C	T	9: 13,532,969 (GRCm39)	Q728*	probably null	Het
Mex3d	A	T	10: 80,217,581 (GRCm39)	N545K		Het
Mios	T	A	6: 8,214,894 (GRCm39)	V30E	probably benign	Het
Muc16	A	G	9: 18,449,060 (GRCm39)		probably null	Het
Naxd	A	G	8: 11,562,968 (GRCm39)	K303E	possibly damaging	Het
Or2w1	T	C	13: 21,317,865 (GRCm39)	F307L	probably benign	Het
Or4l1	T	C	14: 50,166,906 (GRCm39)	T32A	probably benign	Het
Or5a21	T	A	19: 12,310,803 (GRCm39)	H139L	possibly damaging	Het
Or9q2	C	T	19: 13,772,200 (GRCm39)	M258I	probably damaging	Het
Ovgp1	T	C	3: 105,893,883 (GRCm39)		probably benign	Het
Pknox1	C	T	17: 31,822,229 (GRCm39)	T332M	possibly damaging	Het
Ptgdr	A	G	14: 45,090,715 (GRCm39)	S348P		Het
Ptpdc1	T	A	13: 48,740,030 (GRCm39)	E467V	probably benign	Het
Qsox1	A	G	1: 155,658,343 (GRCm39)	S409P	probably damaging	Het
Rfx4	A	G	10: 84,740,921 (GRCm39)	T680A	probably benign	Het
Slc30a5	T	C	13: 100,949,970 (GRCm39)	T371A	probably damaging	Het
Slc5a7	A	T	17: 54,583,669 (GRCm39)	N540K	probably benign	Het
Slco6c1	A	T	1: 96,990,248 (GRCm39)	S664R	possibly damaging	Het
Tbxa2r	A	G	10: 81,168,958 (GRCm39)	S216G	probably damaging	Het
Tgm4	C	A	9: 122,881,837 (GRCm39)	S344R	probably damaging	Het
Thoc6	A	G	17: 23,887,823 (GRCm39)	V328A	possibly damaging	Het
Trim61	T	A	8: 65,467,228 (GRCm39)	Q11L	probably damaging	Het
Txndc2	G	A	17: 65,944,992 (GRCm39)	T395I	probably damaging	Het
Txndc9	T	C	1: 38,034,859 (GRCm39)	E15G	probably benign	Het
Unc93a2	G	T	17: 7,641,842 (GRCm39)	T202K	probably damaging	Het
Uspl1	G	A	5: 149,146,481 (GRCm39)	V411M	probably damaging	Het
Vcpip1	A	G	1: 9,816,049 (GRCm39)	I778T	possibly damaging	Het
Vps54	A	G	11: 21,242,108 (GRCm39)	T408A	probably benign	Het

Other mutations in Wscd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00980:Wscd1	APN	11	71,679,768 (GRCm39)	missense	possibly damaging	0.89
IGL01982:Wscd1	APN	11	71,657,699 (GRCm39)	missense	possibly damaging	0.94
IGL01991:Wscd1	APN	11	71,678,549 (GRCm39)	nonsense	probably null
IGL02211:Wscd1	APN	11	71,679,801 (GRCm39)	missense	probably damaging	1.00
R0011:Wscd1	UTSW	11	71,679,654 (GRCm39)	missense	probably damaging	1.00
R0011:Wscd1	UTSW	11	71,679,654 (GRCm39)	missense	probably damaging	1.00
R0359:Wscd1	UTSW	11	71,657,692 (GRCm39)	missense	probably damaging	1.00
R0371:Wscd1	UTSW	11	71,679,549 (GRCm39)	missense	probably damaging	1.00
R1340:Wscd1	UTSW	11	71,659,586 (GRCm39)	missense	probably benign	0.01
R1429:Wscd1	UTSW	11	71,651,000 (GRCm39)	missense	probably damaging	0.99
R1511:Wscd1	UTSW	11	71,679,501 (GRCm39)	missense	probably damaging	1.00
R1823:Wscd1	UTSW	11	71,651,044 (GRCm39)	missense	probably benign	0.05
R4772:Wscd1	UTSW	11	71,662,802 (GRCm39)	critical splice donor site	probably null
R4885:Wscd1	UTSW	11	71,650,972 (GRCm39)	missense	probably damaging	1.00
R5221:Wscd1	UTSW	11	71,659,501 (GRCm39)	missense	possibly damaging	0.53
R5714:Wscd1	UTSW	11	71,675,261 (GRCm39)	critical splice donor site	probably null
R6351:Wscd1	UTSW	11	71,650,709 (GRCm39)	missense	probably damaging	1.00
R7181:Wscd1	UTSW	11	71,650,709 (GRCm39)	missense	probably damaging	1.00
R7184:Wscd1	UTSW	11	71,679,543 (GRCm39)	missense	probably damaging	1.00
R7461:Wscd1	UTSW	11	71,650,799 (GRCm39)	missense	possibly damaging	0.95
R7613:Wscd1	UTSW	11	71,650,799 (GRCm39)	missense	possibly damaging	0.95
R7754:Wscd1	UTSW	11	71,675,191 (GRCm39)	missense	probably damaging	1.00
R7875:Wscd1	UTSW	11	71,679,560 (GRCm39)	missense	probably damaging	1.00
R8804:Wscd1	UTSW	11	71,675,161 (GRCm39)	missense	probably damaging	1.00
R9103:Wscd1	UTSW	11	71,674,245 (GRCm39)	critical splice donor site	probably null
R9220:Wscd1	UTSW	11	71,662,750 (GRCm39)	missense	probably benign	0.01
R9473:Wscd1	UTSW	11	71,679,644 (GRCm39)	missense	probably damaging	1.00
Z1177:Wscd1	UTSW	11	71,679,811 (GRCm39)	missense	probably damaging	0.98
Z1177:Wscd1	UTSW	11	71,679,626 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- TCAGGATGCTGGGATGATGC -3'
(R):5'- CTACCTCTATTATGGTTGGCTGGTC -3'

Sequencing Primer
(F):5'- ATGATGCCCTTGGAGGCC -3'
(R):5'- CTGCGGGTCACTGGTGAG -3'

Posted On

2022-04-18