Incidental Mutation 'R9372:Pcnt'
ID 709397
Institutional Source Beutler Lab
Gene Symbol Pcnt
Ensembl Gene ENSMUSG00000001151
Gene Name pericentrin (kendrin)
Synonyms m239Asp, m275Asp, Pcnt2
MMRRC Submission
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R9372 (G1)
Quality Score 225.009
Status Not validated
Chromosome 10
Chromosomal Location 76351263-76442786 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) A to G at 76423126 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Tryptophan to Arginine at position 502 (W502R)
Ref Sequence ENSEMBL: ENSMUSP00000151534 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000001179] [ENSMUST00000217838]
AlphaFold no structure available at present
Predicted Effect probably damaging
Transcript: ENSMUST00000001179
AA Change: W502R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000001179
Gene: ENSMUSG00000001151
AA Change: W502R

DomainStartEndE-ValueType
internal_repeat_1 7 78 2.47e-5 PROSPERO
low complexity region 104 114 N/A INTRINSIC
coiled coil region 131 229 N/A INTRINSIC
internal_repeat_3 241 259 6.69e-5 PROSPERO
low complexity region 313 325 N/A INTRINSIC
internal_repeat_3 391 409 6.69e-5 PROSPERO
low complexity region 456 467 N/A INTRINSIC
coiled coil region 468 520 N/A INTRINSIC
coiled coil region 554 581 N/A INTRINSIC
low complexity region 652 666 N/A INTRINSIC
coiled coil region 727 787 N/A INTRINSIC
coiled coil region 871 916 N/A INTRINSIC
low complexity region 931 942 N/A INTRINSIC
low complexity region 969 985 N/A INTRINSIC
coiled coil region 1055 1383 N/A INTRINSIC
coiled coil region 1429 1481 N/A INTRINSIC
coiled coil region 1529 1567 N/A INTRINSIC
low complexity region 1614 1624 N/A INTRINSIC
internal_repeat_2 1916 1964 2.47e-5 PROSPERO
coiled coil region 2158 2178 N/A INTRINSIC
coiled coil region 2211 2279 N/A INTRINSIC
coiled coil region 2300 2421 N/A INTRINSIC
coiled coil region 2447 2526 N/A INTRINSIC
Pfam:PACT_coil_coil 2718 2797 5.8e-29 PFAM
internal_repeat_1 2820 2885 2.47e-5 PROSPERO
internal_repeat_2 2844 2891 2.47e-5 PROSPERO
Predicted Effect probably damaging
Transcript: ENSMUST00000217838
AA Change: W502R

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.7%
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a gene trapped allele display mitotic spindle misorientation, microcephaly, craniofacial developmental anomalies, such as cleft palate and eye defects, variable structural kidney and cardiovascular defects, and altered hemodynamics leading to heart failure and prenatal lethality. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 66 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2200002D01Rik CCTTCTCCTTCTTCTCCTTCTTCTCCTTCTTCTCCATCTTCTCCTTCTTC CCTTCTCCTTCTTCTCCTTCTTCTCCATCTTCTCCTTCTTC 7: 29,247,623 probably benign Het
7420426K07Rik A G 9: 98,903,425 I48V probably benign Het
Aass T C 6: 23,078,857 T719A probably damaging Het
Abcb8 A G 5: 24,400,116 E100G probably benign Het
Actr1b C T 1: 36,702,480 E104K probably damaging Het
Atad5 T A 11: 80,094,268 S60R possibly damaging Het
Bcan G T 3: 87,988,303 A842D probably benign Het
Cacna2d2 G A 9: 107,517,603 E623K probably benign Het
Cdk15 T C 1: 59,330,983 Y393H probably benign Het
Ceacam12 C T 7: 18,069,304 R212C probably benign Het
Ceacam5 T C 7: 17,747,342 I338T possibly damaging Het
Crcp A G 5: 130,059,823 D139G possibly damaging Het
Crls1 T A 2: 132,865,882 Y290* probably null Het
Dcun1d5 A G 9: 7,206,780 N206D probably damaging Het
Dmtf1 A T 5: 9,140,399 V105E possibly damaging Het
Dnah7a T C 1: 53,504,315 Y2232C probably benign Het
Dnajc25 T A 4: 59,003,394 V55E probably damaging Het
Dpy19l4 T C 4: 11,303,343 M193V possibly damaging Het
Dsc1 A T 18: 20,088,432 V662E probably damaging Het
Enpp6 G A 8: 47,053,592 V144I possibly damaging Het
Fip1l1 A G 5: 74,546,802 T204A possibly damaging Het
Flvcr2 T C 12: 85,747,021 V57A probably benign Het
Fsip2 T G 2: 82,992,412 I6163S possibly damaging Het
Gipr T A 7: 19,162,938 M136L probably benign Het
Gm7298 A G 6: 121,771,787 I674V probably benign Het
Gtf2a1 C T 12: 91,567,818 V221I probably damaging Het
Haus3 A T 5: 34,163,658 D481E probably benign Het
Hinfp A C 9: 44,297,786 V345G probably damaging Het
Hs3st5 A T 10: 36,832,702 K78* probably null Het
Ighv1-31 T C 12: 114,829,274 Y114C probably damaging Het
Ighv5-15 T A 12: 113,826,737 T88S probably damaging Het
Ildr1 G A 16: 36,722,359 D418N probably damaging Het
Ints10 C T 8: 68,819,315 T556I probably damaging Het
Isoc1 G T 18: 58,659,685 R65L possibly damaging Het
Itm2c C T 1: 85,905,334 R130C probably damaging Het
Jup C T 11: 100,379,565 C372Y probably damaging Het
Kif11 T C 19: 37,411,444 V793A probably benign Het
Klrg1 A C 6: 122,279,740 V29G probably benign Het
Lrch4 A G 5: 137,633,691 T114A possibly damaging Het
Map3k3 C T 11: 106,142,509 T196M probably damaging Het
March1 C A 8: 66,468,493 T274N probably benign Het
Nxpe5 A T 5: 138,251,183 T412S probably benign Het
Olfr1494 C T 19: 13,749,705 H200Y probably benign Het
Pfdn5 T C 15: 102,326,851 probably null Het
Pkn2 A T 3: 142,829,257 V232E probably damaging Het
Ppfibp1 T C 6: 146,996,809 S88P probably damaging Het
Ptprz1 G A 6: 23,045,707 E2159K probably damaging Het
Smyd3 T C 1: 179,043,905 E303G possibly damaging Het
Snx13 T A 12: 35,101,049 N336K possibly damaging Het
Src A G 2: 157,469,888 E512G possibly damaging Het
Stard9 T A 2: 120,664,939 C98* probably null Het
Tapbpl A G 6: 125,226,709 V336A probably benign Het
Tbrg1 G A 9: 37,652,649 T230I probably damaging Het
Tm7sf3 C T 6: 146,623,681 D89N possibly damaging Het
Tmem132c G A 5: 127,563,081 G772D probably damaging Het
Tmem219 C T 7: 126,896,845 G119S possibly damaging Het
Ttbk2 T A 2: 120,773,285 S325C probably benign Het
Ttc28 A T 5: 111,183,207 Y431F probably benign Het
Vmn1r27 A T 6: 58,215,761 M86K possibly damaging Het
Vmn2r15 G A 5: 109,294,087 P160L possibly damaging Het
Zfc3h1 A T 10: 115,385,318 S41C unknown Het
Zfp260 C A 7: 30,104,807 T44K probably benign Het
Zfp7 TGCGGGAAAGGTTTCCACCTGAGCG TGCG 15: 76,890,600 probably benign Het
Zfp760 A G 17: 21,722,054 N70S probably benign Het
Zfp788 T A 7: 41,650,284 Y781* probably null Het
Zfp800 A T 6: 28,256,434 S52T possibly damaging Het
Other mutations in Pcnt
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01075:Pcnt APN 10 76422904 nonsense probably null
IGL01307:Pcnt APN 10 76411588 missense probably damaging 1.00
IGL01549:Pcnt APN 10 76367486 splice site probably null
IGL01576:Pcnt APN 10 76368822 missense probably damaging 0.99
IGL01611:Pcnt APN 10 76436424 critical splice donor site probably null
IGL01630:Pcnt APN 10 76420246 missense probably damaging 0.99
IGL01647:Pcnt APN 10 76370001 nonsense probably null
IGL01689:Pcnt APN 10 76411653 missense probably damaging 1.00
IGL01690:Pcnt APN 10 76392775 missense probably damaging 1.00
IGL01723:Pcnt APN 10 76418499 missense possibly damaging 0.63
IGL01920:Pcnt APN 10 76404528 missense probably damaging 1.00
IGL01958:Pcnt APN 10 76433679 missense probably damaging 0.96
IGL02210:Pcnt APN 10 76389219 missense possibly damaging 0.95
IGL02225:Pcnt APN 10 76389474 missense probably benign 0.00
IGL02228:Pcnt APN 10 76389474 missense probably benign 0.00
IGL02237:Pcnt APN 10 76352984 missense probably damaging 1.00
IGL02279:Pcnt APN 10 76403765 missense probably damaging 1.00
IGL02303:Pcnt APN 10 76442559 splice site probably benign
IGL02355:Pcnt APN 10 76375162 nonsense probably null
IGL02362:Pcnt APN 10 76375162 nonsense probably null
IGL02428:Pcnt APN 10 76429256 missense probably damaging 0.99
IGL02536:Pcnt APN 10 76380229 missense possibly damaging 0.68
IGL02715:Pcnt APN 10 76368722 splice site probably benign
IGL02800:Pcnt APN 10 76412583 nonsense probably null
IGL03395:Pcnt APN 10 76436491 missense possibly damaging 0.95
IGL02799:Pcnt UTSW 10 76412583 nonsense probably null
PIT4520001:Pcnt UTSW 10 76420235 missense probably damaging 0.99
R0049:Pcnt UTSW 10 76369821 unclassified probably benign
R0049:Pcnt UTSW 10 76369821 unclassified probably benign
R0109:Pcnt UTSW 10 76389196 missense probably benign 0.00
R0117:Pcnt UTSW 10 76408727 nonsense probably null
R0254:Pcnt UTSW 10 76392580 missense probably benign 0.10
R0392:Pcnt UTSW 10 76384826 missense probably benign
R0511:Pcnt UTSW 10 76404595 missense possibly damaging 0.66
R0570:Pcnt UTSW 10 76412107 missense probably damaging 1.00
R0614:Pcnt UTSW 10 76420316 missense probably damaging 1.00
R0635:Pcnt UTSW 10 76404585 missense probably damaging 1.00
R0707:Pcnt UTSW 10 76420541 missense probably damaging 1.00
R0749:Pcnt UTSW 10 76381364 missense probably damaging 1.00
R0969:Pcnt UTSW 10 76427951 missense probably damaging 1.00
R1172:Pcnt UTSW 10 76393044 splice site probably null
R1174:Pcnt UTSW 10 76393044 splice site probably null
R1175:Pcnt UTSW 10 76393044 splice site probably null
R1512:Pcnt UTSW 10 76404662 splice site probably null
R1542:Pcnt UTSW 10 76389387 missense probably benign 0.08
R1542:Pcnt UTSW 10 76401386 missense probably benign 0.02
R1558:Pcnt UTSW 10 76422922 missense possibly damaging 0.53
R1562:Pcnt UTSW 10 76367330 missense probably benign 0.02
R1762:Pcnt UTSW 10 76355137 critical splice acceptor site probably null
R1779:Pcnt UTSW 10 76408796 missense probably damaging 0.99
R1869:Pcnt UTSW 10 76379906 missense probably null 0.94
R1911:Pcnt UTSW 10 76368816 missense possibly damaging 0.94
R1985:Pcnt UTSW 10 76380337 missense possibly damaging 0.95
R1995:Pcnt UTSW 10 76392799 nonsense probably null
R2073:Pcnt UTSW 10 76380380 missense possibly damaging 0.92
R2111:Pcnt UTSW 10 76420526 missense probably damaging 0.99
R2112:Pcnt UTSW 10 76420526 missense probably damaging 0.99
R2309:Pcnt UTSW 10 76442626 start gained probably benign
R2902:Pcnt UTSW 10 76375230 missense probably damaging 0.98
R3623:Pcnt UTSW 10 76433750 missense probably benign 0.23
R4088:Pcnt UTSW 10 76428014 missense probably damaging 1.00
R4300:Pcnt UTSW 10 76367391 missense probably benign 0.40
R4402:Pcnt UTSW 10 76392393 missense probably benign 0.00
R4407:Pcnt UTSW 10 76374870 missense possibly damaging 0.90
R4483:Pcnt UTSW 10 76401483 missense probably damaging 1.00
R4647:Pcnt UTSW 10 76354213 missense probably benign 0.01
R4734:Pcnt UTSW 10 76437206 missense probably benign 0.25
R4747:Pcnt UTSW 10 76436465 missense possibly damaging 0.91
R4782:Pcnt UTSW 10 76409577 missense possibly damaging 0.62
R4795:Pcnt UTSW 10 76370024 missense probably benign 0.21
R4831:Pcnt UTSW 10 76412501 missense probably damaging 0.96
R4873:Pcnt UTSW 10 76369854 missense probably benign 0.03
R4875:Pcnt UTSW 10 76369854 missense probably benign 0.03
R4946:Pcnt UTSW 10 76356185 missense probably damaging 1.00
R5032:Pcnt UTSW 10 76355077 missense probably benign 0.00
R5033:Pcnt UTSW 10 76399945 missense possibly damaging 0.95
R5106:Pcnt UTSW 10 76401444 missense probably damaging 1.00
R5118:Pcnt UTSW 10 76412168 missense probably damaging 0.98
R5167:Pcnt UTSW 10 76420424 missense probably damaging 0.97
R5199:Pcnt UTSW 10 76418544 missense probably benign 0.09
R5223:Pcnt UTSW 10 76380272 missense probably damaging 0.99
R5241:Pcnt UTSW 10 76433617 missense probably benign 0.26
R5308:Pcnt UTSW 10 76356325 nonsense probably null
R5328:Pcnt UTSW 10 76411719 missense probably damaging 1.00
R5454:Pcnt UTSW 10 76389547 splice site probably null
R5543:Pcnt UTSW 10 76412052 missense probably benign 0.01
R5588:Pcnt UTSW 10 76442611 missense possibly damaging 0.74
R5647:Pcnt UTSW 10 76385841 missense probably benign 0.17
R5668:Pcnt UTSW 10 76409500 missense probably benign 0.16
R5712:Pcnt UTSW 10 76429271 missense probably damaging 0.96
R5714:Pcnt UTSW 10 76420491 missense probably damaging 1.00
R5797:Pcnt UTSW 10 76392756 missense probably benign 0.00
R5946:Pcnt UTSW 10 76382063 missense possibly damaging 0.91
R5955:Pcnt UTSW 10 76411622 missense possibly damaging 0.45
R6024:Pcnt UTSW 10 76420037 missense possibly damaging 0.87
R6267:Pcnt UTSW 10 76385798 missense probably benign 0.02
R6485:Pcnt UTSW 10 76389330 nonsense probably null
R6605:Pcnt UTSW 10 76429198 critical splice donor site probably null
R6877:Pcnt UTSW 10 76434017 missense possibly damaging 0.94
R6882:Pcnt UTSW 10 76427828 missense probably benign 0.00
R6919:Pcnt UTSW 10 76385798 missense probably benign 0.02
R7025:Pcnt UTSW 10 76403835 missense probably damaging 1.00
R7098:Pcnt UTSW 10 76384839 missense probably benign
R7109:Pcnt UTSW 10 76369904 missense probably damaging 1.00
R7121:Pcnt UTSW 10 76427927 missense possibly damaging 0.73
R7143:Pcnt UTSW 10 76389060 missense possibly damaging 0.47
R7152:Pcnt UTSW 10 76411360 splice site probably null
R7213:Pcnt UTSW 10 76408904 missense probably damaging 1.00
R7368:Pcnt UTSW 10 76400001 missense probably benign
R7453:Pcnt UTSW 10 76389450 missense probably benign
R7486:Pcnt UTSW 10 76418436 missense probably benign 0.03
R7486:Pcnt UTSW 10 76418437 missense probably benign
R7538:Pcnt UTSW 10 76399939 missense probably benign
R7575:Pcnt UTSW 10 76389252 missense probably benign 0.32
R7662:Pcnt UTSW 10 76387522 missense probably benign 0.27
R7685:Pcnt UTSW 10 76422808 missense probably benign 0.14
R7764:Pcnt UTSW 10 76354248 missense probably benign 0.33
R7802:Pcnt UTSW 10 76375303 splice site probably null
R8432:Pcnt UTSW 10 76420205 missense probably damaging 1.00
R8439:Pcnt UTSW 10 76420205 missense probably damaging 1.00
R8493:Pcnt UTSW 10 76403623 critical splice donor site probably null
R8530:Pcnt UTSW 10 76420205 missense probably damaging 1.00
R8535:Pcnt UTSW 10 76420205 missense probably damaging 1.00
R8830:Pcnt UTSW 10 76382174 missense probably benign 0.03
R8878:Pcnt UTSW 10 76408841 missense probably damaging 1.00
R8911:Pcnt UTSW 10 76387525 missense probably damaging 0.98
R8988:Pcnt UTSW 10 76409573 nonsense probably null
R9084:Pcnt UTSW 10 76399992 missense probably benign 0.09
R9169:Pcnt UTSW 10 76385738 missense possibly damaging 0.95
R9411:Pcnt UTSW 10 76423062 missense probably damaging 0.96
R9448:Pcnt UTSW 10 76420526 missense probably damaging 0.99
R9459:Pcnt UTSW 10 76392738 missense probably damaging 1.00
R9479:Pcnt UTSW 10 76382129 missense probably benign 0.00
R9503:Pcnt UTSW 10 76428048 missense possibly damaging 0.59
R9561:Pcnt UTSW 10 76381294 nonsense probably null
R9618:Pcnt UTSW 10 76352960 missense probably damaging 1.00
R9648:Pcnt UTSW 10 76354255 missense probably benign 0.32
R9733:Pcnt UTSW 10 76401480 missense probably benign 0.01
Z1176:Pcnt UTSW 10 76382157 nonsense probably null
Z1177:Pcnt UTSW 10 76399968 missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- TGAGTTCTTGTTCCAGCTGC -3'
(R):5'- GCACTAGAGCCATTGCATCC -3'

Sequencing Primer
(F):5'- GAGATCTCTCCAGGTCTAAGATCTG -3'
(R):5'- TGCATCCGAATCAAGAGAATGTCTC -3'
Posted On 2022-04-18