Incidental Mutation 'R9388:Lrrc8d'
| ID |
710423 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Lrrc8d
|
| Ensembl Gene |
ENSMUSG00000046079 |
| Gene Name |
leucine rich repeat containing 8D |
| Synonyms |
2810473G09Rik, 4930525N13Rik, Lrrc5 |
| MMRRC Submission |
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R9388 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
5 |
| Chromosomal Location |
105847829-105963081 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 105961862 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Histidine to Glutamine
at position 757
(H757Q)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000057293
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000060531]
[ENSMUST00000120847]
[ENSMUST00000127686]
[ENSMUST00000154807]
[ENSMUST00000156630]
|
| AlphaFold |
Q8BGR2 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000060531
AA Change: H757Q
PolyPhen 2
Score 0.974 (Sensitivity: 0.76; Specificity: 0.96)
|
| SMART Domains |
Protein: ENSMUSP00000057293
Gene: ENSMUSG00000046079
AA Change: H757Q
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:DUF3733
|
1 |
65 |
5.6e-31 |
PFAM |
|
Pfam:DUF3733
|
138 |
197 |
2e-24 |
PFAM |
|
transmembrane domain
|
366 |
388 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
490 |
607 |
1.13e-8 |
PROSPERO |
|
LRR
|
658 |
681 |
1.23e0 |
SMART |
|
LRR
|
683 |
705 |
2.03e1 |
SMART |
|
LRR_TYP
|
706 |
729 |
9.58e-3 |
SMART |
|
LRR
|
730 |
751 |
2.47e2 |
SMART |
|
LRR
|
752 |
775 |
1.76e-1 |
SMART |
|
LRR
|
776 |
797 |
1.01e2 |
SMART |
|
LRR
|
798 |
821 |
3.29e-1 |
SMART |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000120847
AA Change: H757Q
PolyPhen 2
Score 0.974 (Sensitivity: 0.76; Specificity: 0.96)
|
| SMART Domains |
Protein: ENSMUSP00000113603
Gene: ENSMUSG00000046079
AA Change: H757Q
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Pannexin_like
|
1 |
385 |
2.2e-160 |
PFAM |
|
internal_repeat_1
|
490 |
607 |
1.13e-8 |
PROSPERO |
|
LRR
|
658 |
681 |
1.23e0 |
SMART |
|
LRR
|
683 |
705 |
2.03e1 |
SMART |
|
LRR_TYP
|
706 |
729 |
9.58e-3 |
SMART |
|
LRR
|
730 |
751 |
2.47e2 |
SMART |
|
LRR
|
752 |
775 |
1.76e-1 |
SMART |
|
LRR
|
776 |
797 |
1.01e2 |
SMART |
|
LRR
|
798 |
821 |
3.29e-1 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000127686
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000154807
|
| SMART Domains |
Protein: ENSMUSP00000114662
Gene: ENSMUSG00000046079
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:DUF3733
|
1 |
65 |
1.8e-32 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000156630
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.7%
- 20x: 99.0%
|
| Validation Efficiency |
100% (53/53) |
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 53 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 2900026A02Rik |
T |
A |
5: 113,338,714 (GRCm39) |
T433S |
probably benign |
Het |
| Abca14 |
A |
G |
7: 119,882,261 (GRCm39) |
D1141G |
probably benign |
Het |
| Abca17 |
A |
G |
17: 24,483,273 (GRCm39) |
S1728P |
unknown |
Het |
| Adam29 |
A |
C |
8: 56,325,285 (GRCm39) |
C390G |
probably damaging |
Het |
| Angptl4 |
G |
A |
17: 33,996,158 (GRCm39) |
R273* |
probably null |
Het |
| Arfgef3 |
T |
C |
10: 18,505,877 (GRCm39) |
N929S |
probably benign |
Het |
| Baiap3 |
A |
G |
17: 25,466,109 (GRCm39) |
|
probably null |
Het |
| Btla |
T |
C |
16: 45,059,454 (GRCm39) |
S53P |
probably damaging |
Het |
| Cand1 |
A |
G |
10: 119,047,213 (GRCm39) |
F759S |
possibly damaging |
Het |
| Cbll1 |
T |
C |
12: 31,541,567 (GRCm39) |
T104A |
probably benign |
Het |
| Chd7 |
A |
G |
4: 8,865,756 (GRCm39) |
M2688V |
possibly damaging |
Het |
| Cnot3 |
C |
A |
7: 3,661,367 (GRCm39) |
H625Q |
possibly damaging |
Het |
| Dbn1 |
T |
C |
13: 55,624,088 (GRCm39) |
I381V |
probably benign |
Het |
| Dennd2d |
T |
A |
3: 106,395,915 (GRCm39) |
N135K |
possibly damaging |
Het |
| Dnah7c |
T |
C |
1: 46,779,886 (GRCm39) |
I3196T |
probably damaging |
Het |
| Dock2 |
C |
A |
11: 34,212,460 (GRCm39) |
R1227L |
possibly damaging |
Het |
| Esr1 |
A |
G |
10: 4,919,179 (GRCm39) |
E423G |
probably benign |
Het |
| Ganab |
A |
G |
19: 8,892,302 (GRCm39) |
Q826R |
probably damaging |
Het |
| Herc4 |
T |
A |
10: 63,143,522 (GRCm39) |
M684K |
probably benign |
Het |
| Hipk2 |
A |
G |
6: 38,707,956 (GRCm39) |
L613P |
probably damaging |
Het |
| Hpf1 |
A |
T |
8: 61,353,182 (GRCm39) |
I188L |
probably benign |
Het |
| Ifnar1 |
C |
T |
16: 91,292,367 (GRCm39) |
P207L |
probably benign |
Het |
| Il4 |
C |
T |
11: 53,504,837 (GRCm39) |
R76H |
probably damaging |
Het |
| Kif1a |
C |
A |
1: 93,000,029 (GRCm39) |
|
probably null |
Het |
| Kng1 |
A |
T |
16: 22,898,388 (GRCm39) |
Y596F |
possibly damaging |
Het |
| Med24 |
A |
T |
11: 98,600,893 (GRCm39) |
I600N |
possibly damaging |
Het |
| Mmp10 |
G |
A |
9: 7,504,170 (GRCm39) |
W203* |
probably null |
Het |
| Mnt |
C |
T |
11: 74,727,450 (GRCm39) |
A112V |
probably benign |
Het |
| Myh7b |
A |
T |
2: 155,472,983 (GRCm39) |
N1415Y |
probably benign |
Het |
| Nipal1 |
T |
A |
5: 72,825,557 (GRCm39) |
*417R |
probably null |
Het |
| Nlrp4c |
C |
T |
7: 6,069,874 (GRCm39) |
Q592* |
probably null |
Het |
| Obscn |
T |
C |
11: 58,943,489 (GRCm39) |
E4220G |
probably damaging |
Het |
| Or10al7 |
C |
T |
17: 38,366,148 (GRCm39) |
C103Y |
probably damaging |
Het |
| Or13a23-ps1 |
G |
T |
7: 140,118,928 (GRCm39) |
C166F |
unknown |
Het |
| Or2w1b |
T |
C |
13: 21,300,774 (GRCm39) |
L304P |
probably damaging |
Het |
| Or5aq6 |
A |
T |
2: 86,923,390 (GRCm39) |
M117K |
possibly damaging |
Het |
| Pcdhb20 |
A |
T |
18: 37,638,853 (GRCm39) |
I460F |
probably benign |
Het |
| Prb1b |
T |
C |
6: 132,289,437 (GRCm39) |
Q129R |
unknown |
Het |
| Primpol |
G |
A |
8: 47,034,605 (GRCm39) |
T441I |
possibly damaging |
Het |
| Ptprc |
A |
G |
1: 138,011,380 (GRCm39) |
V583A |
possibly damaging |
Het |
| Rfx6 |
T |
C |
10: 51,554,117 (GRCm39) |
V71A |
possibly damaging |
Het |
| Rgsl1 |
T |
C |
1: 153,693,355 (GRCm39) |
I574V |
probably benign |
Het |
| Rims3 |
A |
G |
4: 120,748,552 (GRCm39) |
I258V |
possibly damaging |
Het |
| Sec16b |
T |
C |
1: 157,388,393 (GRCm39) |
Y776H |
probably benign |
Het |
| Skint6 |
C |
T |
4: 113,049,838 (GRCm39) |
D276N |
possibly damaging |
Het |
| Slc45a1 |
T |
C |
4: 150,727,067 (GRCm39) |
D184G |
probably damaging |
Het |
| St6galnac4 |
A |
T |
2: 32,479,625 (GRCm39) |
S61C |
probably damaging |
Het |
| Stab1 |
C |
T |
14: 30,876,312 (GRCm39) |
V926M |
probably damaging |
Het |
| Stat1 |
A |
T |
1: 52,193,037 (GRCm39) |
K642N |
possibly damaging |
Het |
| Tmprss3 |
A |
G |
17: 31,410,041 (GRCm39) |
F191S |
probably damaging |
Het |
| Ube2o |
T |
C |
11: 116,430,210 (GRCm39) |
D1176G |
possibly damaging |
Het |
| Usp17ld |
G |
T |
7: 102,900,145 (GRCm39) |
N262K |
probably benign |
Het |
| Xpnpep1 |
T |
C |
19: 52,993,233 (GRCm39) |
K365E |
probably damaging |
Het |
|
| Other mutations in Lrrc8d |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00765:Lrrc8d
|
APN |
5 |
105,959,818 (GRCm39) |
missense |
possibly damaging |
0.60 |
|
IGL01327:Lrrc8d
|
APN |
5 |
105,960,131 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02148:Lrrc8d
|
APN |
5 |
105,960,253 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
IGL02228:Lrrc8d
|
APN |
5 |
105,959,730 (GRCm39) |
missense |
probably benign |
0.44 |
|
IGL02551:Lrrc8d
|
APN |
5 |
105,961,414 (GRCm39) |
missense |
possibly damaging |
0.78 |
|
IGL02605:Lrrc8d
|
APN |
5 |
105,974,683 (GRCm39) |
intron |
noncoding transcript |
|
|
heehaw
|
UTSW |
5 |
105,960,957 (GRCm39) |
missense |
probably damaging |
1.00 |
|
hoot
|
UTSW |
5 |
105,959,626 (GRCm39) |
missense |
probably damaging |
1.00 |
|
BB009:Lrrc8d
|
UTSW |
5 |
105,960,891 (GRCm39) |
missense |
probably damaging |
1.00 |
|
BB019:Lrrc8d
|
UTSW |
5 |
105,960,891 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0415:Lrrc8d
|
UTSW |
5 |
105,959,731 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1424:Lrrc8d
|
UTSW |
5 |
105,974,782 (GRCm39) |
missense |
unknown |
|
|
R1754:Lrrc8d
|
UTSW |
5 |
105,960,523 (GRCm39) |
missense |
probably benign |
|
|
R3411:Lrrc8d
|
UTSW |
5 |
105,974,572 (GRCm39) |
intron |
noncoding transcript |
|
|
R3605:Lrrc8d
|
UTSW |
5 |
105,974,873 (GRCm39) |
missense |
unknown |
|
|
R3705:Lrrc8d
|
UTSW |
5 |
105,961,341 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3798:Lrrc8d
|
UTSW |
5 |
105,960,355 (GRCm39) |
missense |
probably benign |
0.12 |
|
R3951:Lrrc8d
|
UTSW |
5 |
105,962,142 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4300:Lrrc8d
|
UTSW |
5 |
105,961,606 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4953:Lrrc8d
|
UTSW |
5 |
105,961,234 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5211:Lrrc8d
|
UTSW |
5 |
105,961,606 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5436:Lrrc8d
|
UTSW |
5 |
105,960,418 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R5512:Lrrc8d
|
UTSW |
5 |
105,960,650 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5512:Lrrc8d
|
UTSW |
5 |
105,960,651 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5514:Lrrc8d
|
UTSW |
5 |
105,960,651 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5514:Lrrc8d
|
UTSW |
5 |
105,960,650 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5531:Lrrc8d
|
UTSW |
5 |
105,945,536 (GRCm39) |
intron |
probably benign |
|
|
R5929:Lrrc8d
|
UTSW |
5 |
105,960,472 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R6063:Lrrc8d
|
UTSW |
5 |
105,959,992 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6379:Lrrc8d
|
UTSW |
5 |
105,960,675 (GRCm39) |
missense |
probably benign |
0.08 |
|
R6431:Lrrc8d
|
UTSW |
5 |
105,959,626 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7127:Lrrc8d
|
UTSW |
5 |
105,960,829 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7682:Lrrc8d
|
UTSW |
5 |
105,960,657 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7821:Lrrc8d
|
UTSW |
5 |
105,960,210 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7932:Lrrc8d
|
UTSW |
5 |
105,960,891 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8528:Lrrc8d
|
UTSW |
5 |
105,960,352 (GRCm39) |
missense |
probably benign |
0.22 |
|
R8976:Lrrc8d
|
UTSW |
5 |
105,960,957 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9063:Lrrc8d
|
UTSW |
5 |
105,961,959 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R9116:Lrrc8d
|
UTSW |
5 |
105,961,908 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9211:Lrrc8d
|
UTSW |
5 |
105,960,216 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9358:Lrrc8d
|
UTSW |
5 |
105,960,358 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9796:Lrrc8d
|
UTSW |
5 |
105,959,917 (GRCm39) |
missense |
probably benign |
0.01 |
|
RF003:Lrrc8d
|
UTSW |
5 |
105,960,507 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0024:Lrrc8d
|
UTSW |
5 |
105,959,611 (GRCm39) |
missense |
probably damaging |
0.99 |
|
| Predicted Primers |
PCR Primer
(F):5'- ACTTGCTTAAAGCTGTGGCAC -3'
(R):5'- TCTTGAGCATCCGACACTGG -3'
Sequencing Primer
(F):5'- AAAGCTGTGGCACAATAAAATTG -3'
(R):5'- ATCCGACACTGGCCCAG -3'
|
| Posted On |
2022-04-18 |
Incidental Mutation