Mutagenetix > Incidental Mutation

Incidental Mutation 'R9396:Rnf180'

710853

Institutional Source

Beutler Lab

Gene Symbol

Rnf180

Ensembl Gene

ENSMUSG00000021720

Gene Name

ring finger protein 180

Synonyms

3110001E11Rik, Rines

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.099) question?

Stock #

R9396 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

105267075-105431406 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

T to A at 105318027 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Stop codon at position 462 (K462*)

Ref Sequence

ENSEMBL: ENSMUSP00000064624 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000069686] [ENSMUST00000224011] [ENSMUST00000224662] [ENSMUST00000226044]

AlphaFold

Q3U827

Predicted Effect

probably null
Transcript: ENSMUST00000069686
AA Change: K462*

SMART Domains

Protein: ENSMUSP00000064624
Gene: ENSMUSG00000021720
AA Change: K462*

Domain	Start	End	E-Value	Type
low complexity region	4	19	N/A	INTRINSIC
low complexity region	273	289	N/A	INTRINSIC
low complexity region	378	395	N/A	INTRINSIC
RING	432	473	1.65e-5	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000224011
AA Change: K462*

Predicted Effect

probably null
Transcript: ENSMUST00000224662
AA Change: K462*

Predicted Effect

probably null
Transcript: ENSMUST00000226044
AA Change: K461*

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.2%

Validation Efficiency

98% (56/57)

MGI Phenotype

PHENOTYPE: Knock-out mice show impaired stress responses, enhanced anxiety, and affiliative behavior. Norepinephrine and serotonin levels are decreased in the locus ceruleus, prefrontal cortex, and amygdala and MAO-A enzyme activity is enhanced in the locus ceruleus. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcg8	T	A	17: 85,000,282 (GRCm39)	F281I	probably damaging	Het
Acad8	A	G	9: 26,887,041 (GRCm39)	M402T	probably damaging	Het
Apcdd1	C	T	18: 63,055,731 (GRCm39)		probably benign	Het
Apol7a	T	C	15: 77,273,925 (GRCm39)	E179G	possibly damaging	Het
Asmt	A	G	X: 169,110,141 (GRCm39)	T217A	probably benign	Het
Cadm2	T	C	16: 66,544,102 (GRCm39)	Y318C	probably damaging	Het
Cckar	G	A	5: 53,864,623 (GRCm39)	T26M	probably damaging	Het
Cd300ld	G	A	11: 114,878,230 (GRCm39)	T94I	probably damaging	Het
Cdk5rap2	A	G	4: 70,172,903 (GRCm39)	Y1390H	possibly damaging	Het
Cdk5rap2	C	T	4: 70,182,895 (GRCm39)	S1268N	probably damaging	Het
Csrnp3	C	T	2: 65,832,841 (GRCm39)	R127C	probably damaging	Het
Dsc2	T	A	18: 20,174,773 (GRCm39)	R501*	probably null	Het
Dusp2	C	T	2: 127,179,638 (GRCm39)	R294C	probably damaging	Het
Edrf1	A	G	7: 133,261,838 (GRCm39)	K878E	possibly damaging	Het
Evc	T	C	5: 37,476,434 (GRCm39)	T372A	possibly damaging	Het
Fcgr1	T	A	3: 96,194,390 (GRCm39)	K166*	probably null	Het
Fstl4	C	A	11: 52,664,778 (GRCm39)	P36Q	probably benign	Het
Gas2l2	A	T	11: 83,313,659 (GRCm39)	I551N	probably benign	Het
Hc	G	T	2: 34,927,615 (GRCm39)	S333*	probably null	Het
Ibsp	A	G	5: 104,458,297 (GRCm39)	Y278C	probably damaging	Het
Ifitm10	A	T	7: 141,924,704 (GRCm39)	V45D	probably damaging	Het
Kcnc3	T	C	7: 44,240,937 (GRCm39)	S210P	possibly damaging	Het
Klhl3	T	G	13: 58,161,662 (GRCm39)	T531P	probably damaging	Het
Mapt	C	A	11: 104,189,555 (GRCm39)	P191Q	possibly damaging	Het
Myh9	T	C	15: 77,647,496 (GRCm39)	T1840A	probably benign	Het
Myof	A	T	19: 37,923,294 (GRCm39)	C1320S	probably damaging	Het
Myom3	G	T	4: 135,513,199 (GRCm39)	V626L	probably benign	Het
Nalf2	C	T	X: 98,889,097 (GRCm39)	R321W	probably damaging	Het
Ndor1	A	G	2: 25,138,921 (GRCm39)	L321P	probably benign	Het
Nhsl1	T	A	10: 18,399,749 (GRCm39)	M291K	probably damaging	Het
Nubp2	C	T	17: 25,103,476 (GRCm39)	V134I	probably benign	Het
Nuf2	T	C	1: 169,337,917 (GRCm39)	I287V	probably benign	Het
Or1d2	T	A	11: 74,256,089 (GRCm39)	M198K	probably benign	Het
Or2n1	T	A	17: 38,486,421 (GRCm39)	W149R	probably damaging	Het
Or4k42	A	G	2: 111,319,864 (GRCm39)	L213P	probably benign	Het
Or51i2	A	G	7: 103,689,720 (GRCm39)	N239S	probably benign	Het
Or55b4	A	C	7: 102,134,180 (GRCm39)	V49G	possibly damaging	Het
Or5k3	G	A	16: 58,969,302 (GRCm39)	V30M	probably damaging	Het
Or8k28	A	T	2: 86,285,845 (GRCm39)	C257S	probably benign	Het
Pals1	G	T	12: 78,871,521 (GRCm39)	R367L	possibly damaging	Het
Pkd1l3	GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA	GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA	8: 110,350,827 (GRCm39)		probably benign	Het
Ppp1r12a	A	G	10: 108,100,571 (GRCm39)	E863G	probably damaging	Het
Pskh1	C	T	8: 106,640,091 (GRCm39)	T257M	possibly damaging	Het
Rasgef1b	T	C	5: 99,377,188 (GRCm39)	I334V	probably benign	Het
Sin3a	A	G	9: 57,008,445 (GRCm39)	D455G	probably benign	Het
Slc15a4	A	G	5: 127,694,463 (GRCm39)		probably benign	Het
Slc2a13	T	C	15: 91,227,915 (GRCm39)	T426A	probably benign	Het
Smarca5	T	C	8: 81,463,358 (GRCm39)	K70R	probably benign	Het
Smg1	A	G	7: 117,807,303 (GRCm39)	V182A	unknown	Het
Stim1	G	A	7: 102,064,592 (GRCm39)	V221I	possibly damaging	Het
Tbx18	T	C	9: 87,609,432 (GRCm39)	D201G	probably damaging	Het
Tcf25	A	G	8: 124,127,831 (GRCm39)	E630G	probably benign	Het
Tm7sf3	T	C	6: 146,523,472 (GRCm39)	N135S	possibly damaging	Het
Togaram1	A	G	12: 65,014,429 (GRCm39)	N560S	probably damaging	Het
Unc13d	A	G	11: 115,966,529 (GRCm39)		probably null	Het
Zfp445	A	C	9: 122,681,581 (GRCm39)	S787A	probably benign	Het
Zfp949	T	C	9: 88,449,260 (GRCm39)	W22R	probably damaging	Het

Other mutations in Rnf180

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01520:Rnf180	APN	13	105,386,864 (GRCm39)	missense	probably damaging	0.96
R0270:Rnf180	UTSW	13	105,388,774 (GRCm39)	missense	probably benign	0.06
R1660:Rnf180	UTSW	13	105,407,499 (GRCm39)	missense	probably benign	0.04
R3881:Rnf180	UTSW	13	105,386,915 (GRCm39)	missense	possibly damaging	0.62
R6007:Rnf180	UTSW	13	105,317,957 (GRCm39)	critical splice donor site	probably null
R6740:Rnf180	UTSW	13	105,318,014 (GRCm39)	missense	possibly damaging	0.91
R6824:Rnf180	UTSW	13	105,318,023 (GRCm39)	missense	probably damaging	1.00
R7021:Rnf180	UTSW	13	105,407,429 (GRCm39)	missense	probably benign	0.03
R7655:Rnf180	UTSW	13	105,304,096 (GRCm39)	missense	probably damaging	1.00
R7656:Rnf180	UTSW	13	105,304,096 (GRCm39)	missense	probably damaging	1.00
R8352:Rnf180	UTSW	13	105,318,056 (GRCm39)	missense	probably damaging	1.00
R8452:Rnf180	UTSW	13	105,318,056 (GRCm39)	missense	probably damaging	1.00
R9288:Rnf180	UTSW	13	105,386,781 (GRCm39)	small insertion	probably benign
R9409:Rnf180	UTSW	13	105,386,781 (GRCm39)	small insertion	probably benign
R9410:Rnf180	UTSW	13	105,386,781 (GRCm39)	small insertion	probably benign
R9636:Rnf180	UTSW	13	105,386,819 (GRCm39)	missense	possibly damaging	0.52
Z1177:Rnf180	UTSW	13	105,318,121 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- AGCAGAAGTCACATCATGGATG -3'
(R):5'- TTCTCTCAGGGAATCCAGCC -3'

Sequencing Primer
(F):5'- GTCACATCATGGATGGTTTTCAC -3'
(R):5'- CTAAGACAATGTTTCCCTTGTGTG -3'

Posted On

2022-04-18