Mutagenetix > Incidental Mutation

Incidental Mutation 'R9400:Chst2'

711058

Institutional Source

Beutler Lab

Gene Symbol

Chst2

Ensembl Gene

ENSMUSG00000033350

Gene Name

carbohydrate sulfotransferase 2

Synonyms

C130041E03Rik, N-acetylglucosamine-6-O-sulfotransferase, Gn6st, GST-2

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.082) question?

Stock #

R9400 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

95282979-95289323 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 95287642 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Glycine at position 235 (S235G)

Ref Sequence

ENSEMBL: ENSMUSP00000040775 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000036267]

AlphaFold

Q80WV3

Predicted Effect

probably benign
Transcript: ENSMUST00000036267
AA Change: S235G

PolyPhen 2 Score 0.143 (Sensitivity: 0.92; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000040775
Gene: ENSMUSG00000033350
AA Change: S235G

Domain	Start	End	E-Value	Type
low complexity region	6	45	N/A	INTRINSIC
transmembrane domain	55	74	N/A	INTRINSIC
low complexity region	88	114	N/A	INTRINSIC
low complexity region	129	149	N/A	INTRINSIC
Pfam:Sulfotransfer_1	164	507	7e-27	PFAM
Pfam:Sulfotransfer_3	165	446	6.6e-18	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This locus encodes a sulfotransferase protein. The encoded enzyme catalyzes the sulfation of a nonreducing N-acetylglucosamine residue, and may play a role in biosynthesis of 6-sulfosialyl Lewis X antigen. [provided by RefSeq, Aug 2011]
PHENOTYPE: Mice homozygous for a knock-out allele display decreased lymphocyte binding to peripheral lymph node high endothelial venules, and significantly reduced lymphocyte homing to Peyer's patches, peripheral and mesenteric lymph nodes. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700010I14Rik	A	G	17: 9,211,118 (GRCm39)	N89S	probably benign	Het
9930111J21Rik1	C	T	11: 48,839,244 (GRCm39)	E448K	possibly damaging	Het
Acer1	G	A	17: 57,288,990 (GRCm39)	T40M	probably damaging	Het
Adam1a	T	C	5: 121,657,893 (GRCm39)	T467A	probably benign	Het
Agmat	A	G	4: 141,476,981 (GRCm39)	D129G	probably damaging	Het
Ak8	T	A	2: 28,650,011 (GRCm39)	I346N	probably benign	Het
Ankrd12	A	T	17: 66,291,875 (GRCm39)	V1186E	probably damaging	Het
Ankrd27	T	G	7: 35,316,282 (GRCm39)	L516R	probably damaging	Het
Aplp2	C	A	9: 31,075,855 (GRCm39)	R402L	possibly damaging	Het
Aspm	A	G	1: 139,407,641 (GRCm39)	Y2176C	probably damaging	Het
Boc	T	C	16: 44,319,844 (GRCm39)	D380G		Het
Celsr1	G	T	15: 85,917,286 (GRCm39)	S229*	probably null	Het
Clca4b	A	G	3: 144,616,953 (GRCm39)	V899A	probably benign	Het
Ddx1	A	G	12: 13,273,703 (GRCm39)	S617P	probably damaging	Het
Etv5	A	T	16: 22,220,476 (GRCm39)	F304I	probably benign	Het
Fmo9	T	G	1: 166,505,243 (GRCm39)	E50A	probably benign	Het
Gbp11	T	C	5: 105,478,841 (GRCm39)	E199G	probably damaging	Het
Gemin5	C	T	11: 58,028,541 (GRCm39)	G893D	probably damaging	Het
Gorab	G	T	1: 163,224,567 (GRCm39)	P78Q	probably damaging	Het
Gprc5a	A	G	6: 135,055,558 (GRCm39)	T2A	probably benign	Het
Gtf3c1	A	G	7: 125,275,683 (GRCm39)	I581T	probably damaging	Het
H6pd	A	G	4: 150,080,248 (GRCm39)	F199S	probably damaging	Het
Hdac3	A	T	18: 38,070,677 (GRCm39)	V426E	possibly damaging	Het
Jag2	G	T	12: 112,875,608 (GRCm39)	Y838*	probably null	Het
Kat6b	G	T	14: 21,659,826 (GRCm39)	R210L	probably damaging	Het
Kctd11	C	A	11: 69,770,544 (GRCm39)	E165*	probably null	Het
Knl1	T	C	2: 118,931,224 (GRCm39)	V1980A	probably damaging	Het
Lilrb4b	T	C	10: 51,357,319 (GRCm39)	S52P	probably benign	Het
Lrp5	T	G	19: 3,635,272 (GRCm39)	M1535L	probably benign	Het
Lrr1	A	G	12: 69,221,476 (GRCm39)	D206G	probably benign	Het
Lrrd1	G	A	5: 3,899,677 (GRCm39)		probably benign	Het
Map3k6	C	A	4: 132,968,467 (GRCm39)	A23E	probably damaging	Het
Mgat4a	T	C	1: 37,502,025 (GRCm39)	D241G	probably damaging	Het
Mpzl3	A	G	9: 44,986,077 (GRCm39)	Y237C	possibly damaging	Het
Mroh1	A	G	15: 76,336,093 (GRCm39)	E1489G	possibly damaging	Het
Myocd	T	C	11: 65,086,934 (GRCm39)	H331R	probably benign	Het
Myoz1	T	A	14: 20,699,504 (GRCm39)	H278L	probably benign	Het
Or12d2	A	T	17: 37,624,554 (GRCm39)	C240*	probably null	Het
Or1e22	A	T	11: 73,376,807 (GRCm39)	V281E	probably damaging	Het
Or4c104	A	G	2: 88,586,293 (GRCm39)	I242T	possibly damaging	Het
Or5a3	C	A	19: 12,400,274 (GRCm39)	N200K	possibly damaging	Het
Or5b102	T	A	19: 13,041,139 (GRCm39)	Y121*	probably null	Het
Or5b24	T	A	19: 12,912,878 (GRCm39)	Y259N	probably damaging	Het
Otof	A	T	5: 30,540,863 (GRCm39)		probably null	Het
Pcdha1	A	G	18: 37,064,760 (GRCm39)	I475V	probably benign	Het
Pcgf1	A	G	6: 83,057,066 (GRCm39)	E199G	possibly damaging	Het
Pip	C	A	6: 41,828,782 (GRCm39)	T109K	probably benign	Het
Slc12a7	A	G	13: 73,932,689 (GRCm39)	E59G	probably benign	Het
Slc38a2	T	C	15: 96,591,053 (GRCm39)	I237V	probably benign	Het
Slc6a5	T	C	7: 49,595,267 (GRCm39)	V543A	probably benign	Het
Slc9a2	T	C	1: 40,758,211 (GRCm39)	V250A	possibly damaging	Het
Smarcad1	T	C	6: 65,050,214 (GRCm39)	Y278H	probably damaging	Het
Snx7	A	T	3: 117,630,863 (GRCm39)	N248K	probably benign	Het
Spata6	T	A	4: 111,577,428 (GRCm39)	C9S	probably benign	Het
Stra6l	T	A	4: 45,885,293 (GRCm39)	L587Q	probably damaging	Het
Tmem131l	G	T	3: 83,830,293 (GRCm39)	N916K	possibly damaging	Het
Tmprss11c	C	T	5: 86,385,516 (GRCm39)	V319I	probably benign	Het
Tpo	A	T	12: 30,169,441 (GRCm39)	I98K	possibly damaging	Het
Umodl1	A	G	17: 31,215,367 (GRCm39)	T1064A	probably damaging	Het
Vldlr	T	C	19: 27,216,175 (GRCm39)	I332T	probably damaging	Het
Wdr75	T	A	1: 45,843,064 (GRCm39)	L133Q	probably damaging	Het
Zdhhc21	T	C	4: 82,753,687 (GRCm39)	N167S	probably benign	Het
Zfp37	A	T	4: 62,109,904 (GRCm39)	C428S	probably damaging	Het

Other mutations in Chst2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02403:Chst2	APN	9	95,287,285 (GRCm39)	nonsense	probably null
R1240:Chst2	UTSW	9	95,287,536 (GRCm39)	missense	possibly damaging	0.68
R1537:Chst2	UTSW	9	95,288,194 (GRCm39)	missense	probably benign	0.04
R1884:Chst2	UTSW	9	95,287,611 (GRCm39)	missense	probably damaging	1.00
R2355:Chst2	UTSW	9	95,288,148 (GRCm39)	missense	probably damaging	0.99
R4576:Chst2	UTSW	9	95,287,224 (GRCm39)	missense	probably damaging	0.99
R4818:Chst2	UTSW	9	95,287,417 (GRCm39)	missense	probably damaging	1.00
R4928:Chst2	UTSW	9	95,288,059 (GRCm39)	missense	probably benign	0.10
R5366:Chst2	UTSW	9	95,287,518 (GRCm39)	missense	probably damaging	1.00
R5703:Chst2	UTSW	9	95,286,985 (GRCm39)	missense	probably damaging	0.99
R5902:Chst2	UTSW	9	95,287,662 (GRCm39)	missense	probably damaging	1.00
R6339:Chst2	UTSW	9	95,287,803 (GRCm39)	missense	probably damaging	1.00
R6752:Chst2	UTSW	9	95,286,802 (GRCm39)	nonsense	probably null
R7063:Chst2	UTSW	9	95,287,621 (GRCm39)	missense	probably benign	0.28
R8061:Chst2	UTSW	9	95,287,224 (GRCm39)	missense	probably damaging	0.99
R9008:Chst2	UTSW	9	95,288,347 (GRCm39)	start gained	probably benign
R9204:Chst2	UTSW	9	95,287,155 (GRCm39)	missense	probably damaging	0.99
R9732:Chst2	UTSW	9	95,287,951 (GRCm39)	missense	probably benign	0.02
Z1177:Chst2	UTSW	9	95,286,894 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CTTGATAACCAGCGTGCGGTAC -3'
(R):5'- ACAAGCGGCAGTTGGTGTATG -3'

Sequencing Primer
(F):5'- TGCGGTACTTGCGACACTC -3'
(R):5'- TTCACCACGTGGCGCTC -3'

Posted On

2022-04-20