Mutagenetix > Incidental Mutation

Incidental Mutation 'R9401:Fmo9'

711189

Institutional Source

Beutler Lab

Gene Symbol

Fmo9

Ensembl Gene

ENSMUSG00000026560

Gene Name

flavin containing monooxygenase 9

Synonyms

4831428F09Rik

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.063) question?

Stock #

R9401 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

166489624-166509414 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 166505189 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Lysine at position 68 (M68K)

Ref Sequence

ENSEMBL: ENSMUSP00000027843 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027843] [ENSMUST00000148677]

AlphaFold

Q8C116

Predicted Effect

probably damaging
Transcript: ENSMUST00000027843
AA Change: M68K

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000027843
Gene: ENSMUSG00000026560
AA Change: M68K

Domain	Start	End	E-Value	Type
Pfam:FMO-like	3	535	1.2e-252	PFAM
Pfam:Pyr_redox_2	4	262	2.9e-12	PFAM
Pfam:Pyr_redox_3	7	221	2.3e-14	PFAM
Pfam:NAD_binding_8	8	83	1.2e-6	PFAM
Pfam:K_oxygenase	77	334	8.9e-11	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000148677
AA Change: M17K

PolyPhen 2 Score 0.903 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000114750
Gene: ENSMUSG00000026560
AA Change: M17K

Domain	Start	End	E-Value	Type
Pfam:FMO-like	1	484	1.6e-222	PFAM
Pfam:Pyr_redox_3	3	170	1.2e-12	PFAM
Pfam:K_oxygenase	28	283	6.2e-11	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aars1	A	G	8: 111,780,785 (GRCm39)	D850G	probably benign	Het
Abcc9	T	A	6: 142,543,836 (GRCm39)	T1480S	possibly damaging	Het
Adgrb3	C	A	1: 25,592,783 (GRCm39)	V335F	probably damaging	Het
Agfg1	C	A	1: 82,859,958 (GRCm39)	A275D	probably benign	Het
Alms1	T	A	6: 85,655,001 (GRCm39)	C2713*	probably null	Het
Atp8a1	G	A	5: 67,906,492 (GRCm39)	A474V		Het
Baz1a	C	A	12: 54,963,339 (GRCm39)	S918I	probably damaging	Het
Bcl2l12	G	T	7: 44,643,674 (GRCm39)	T120K	possibly damaging	Het
Bcl6	G	T	16: 23,791,107 (GRCm39)	Q416K	possibly damaging	Het
Cdhr1	T	A	14: 36,820,055 (GRCm39)	I16F	probably benign	Het
Celsr1	G	T	15: 85,917,286 (GRCm39)	S229*	probably null	Het
Cilp	T	C	9: 65,185,381 (GRCm39)	V492A	probably damaging	Het
Crim1	CCGC	CC	17: 78,658,294 (GRCm39)		probably null	Het
Crppa	T	C	12: 36,552,073 (GRCm39)	V309A	probably benign	Het
Ctcfl	T	G	2: 172,947,881 (GRCm39)	T479P	probably damaging	Het
Dlx6	A	C	6: 6,863,581 (GRCm39)	M68L	probably benign	Het
Dnah7a	C	A	1: 53,568,026 (GRCm39)	V1857F	probably benign	Het
Dpy19l4	A	G	4: 11,265,806 (GRCm39)	V714A	probably benign	Het
Elovl7	T	A	13: 108,419,188 (GRCm39)	N273K	probably benign	Het
Fbxo22	A	G	9: 55,130,628 (GRCm39)	K299R	probably benign	Het
Fig4	A	G	10: 41,143,733 (GRCm39)	V242A	probably benign	Het
Fry	T	A	5: 150,302,403 (GRCm39)	Y537N	probably damaging	Het
Fryl	C	T	5: 73,222,563 (GRCm39)	W2006*	probably null	Het
Fzd8	T	A	18: 9,213,205 (GRCm39)	C96S	possibly damaging	Het
Gm40460	ACCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAG	ACCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAG	7: 141,794,450 (GRCm39)		probably benign	Het
Gspt1	T	C	16: 11,050,535 (GRCm39)	D272G	possibly damaging	Het
Gzmf	A	T	14: 56,448,813 (GRCm39)	M1K	probably null	Het
Hipk1	T	C	3: 103,685,295 (GRCm39)	T107A	probably benign	Het
Hsd3b9	T	G	3: 98,363,819 (GRCm39)	T9P	probably damaging	Het
Ighe	C	T	12: 113,233,107 (GRCm39)	C438Y		Het
Igkv4-50	T	A	6: 69,677,967 (GRCm39)	R46W		Het
Igsf3	T	A	3: 101,333,075 (GRCm39)	Y118N	probably damaging	Het
Itsn1	T	A	16: 91,612,408 (GRCm39)	Y266N	probably damaging	Het
Jph3	A	G	8: 122,511,854 (GRCm39)	E614G	probably damaging	Het
Klk1b8	T	A	7: 43,603,674 (GRCm39)	D170E	probably benign	Het
Ly6e	A	T	15: 74,830,153 (GRCm39)	K36*	probably null	Het
Map3k6	C	A	4: 132,968,467 (GRCm39)	A23E	probably damaging	Het
Med13l	T	A	5: 118,883,089 (GRCm39)	M1316K	probably benign	Het
Or5c1	T	C	2: 37,222,293 (GRCm39)	V178A	possibly damaging	Het
Or6c76b	A	G	10: 129,693,298 (GRCm39)	R304G	probably benign	Het
Or8u3-ps	A	T	2: 85,952,368 (GRCm39)	I34F	possibly damaging	Het
Pih1d2	T	A	9: 50,529,905 (GRCm39)	C45S	probably damaging	Het
Pik3r2	G	A	8: 71,223,737 (GRCm39)	S318L	possibly damaging	Het
Pknox1	T	C	17: 31,802,752 (GRCm39)	I9T	probably benign	Het
Pknox2	T	C	9: 36,835,041 (GRCm39)	I143V	probably damaging	Het
Polr1d	A	G	5: 147,015,488 (GRCm39)	Y57C	probably damaging	Het
Pum3	A	T	19: 27,376,336 (GRCm39)	D527E	probably benign	Het
Rars2	T	A	4: 34,654,819 (GRCm39)	H374Q	probably damaging	Het
Rassf9	G	A	10: 102,348,369 (GRCm39)		probably benign	Het
Rbl1	T	A	2: 157,016,742 (GRCm39)	H619L	possibly damaging	Het
Scamp4	T	C	10: 80,448,238 (GRCm39)	V153A	probably benign	Het
Sec23b	T	G	2: 144,420,286 (GRCm39)	I450S	probably benign	Het
Slc35b2	A	G	17: 45,877,910 (GRCm39)	I297V	probably benign	Het
Slc4a4	C	T	5: 89,327,525 (GRCm39)	T654I	probably damaging	Het
Slc6a5	T	A	7: 49,601,185 (GRCm39)	M662K	probably damaging	Het
Smarcad1	T	C	6: 65,071,321 (GRCm39)	Y589H	probably benign	Het
Spata31d1e	T	C	13: 59,890,012 (GRCm39)	T603A	probably benign	Het
Stab1	A	T	14: 30,883,069 (GRCm39)	F374I	probably benign	Het
Stat5a	C	T	11: 100,756,254 (GRCm39)	T158M	possibly damaging	Het
Trpc3	A	T	3: 36,675,503 (GRCm39)	Y878*	probably null	Het
Ubr1	T	A	2: 120,765,765 (GRCm39)	T491S	probably benign	Het
Uggt1	C	T	1: 36,255,212 (GRCm39)		probably null	Het
Ugt1a6a	T	A	1: 88,066,882 (GRCm39)	Y229*	probably null	Het
Vmn1r225	G	A	17: 20,722,911 (GRCm39)	W117*	probably null	Het
Vmn1r225	A	C	17: 20,722,912 (GRCm39)	K118Q	probably damaging	Het
Vmn1r43	G	A	6: 89,846,877 (GRCm39)	T203M	probably damaging	Het
Vmn2r116	T	C	17: 23,620,566 (GRCm39)	S767P	probably damaging	Het
Wdr90	AGAC	AGACGAC	17: 26,064,750 (GRCm39)		probably benign	Het
Ythdf3	C	T	3: 16,258,659 (GRCm39)	P280S	probably damaging	Het
Zbbx	A	G	3: 75,019,390 (GRCm39)	S107P	probably benign	Het
Zdhhc7	A	T	8: 120,813,425 (GRCm39)	V128E	probably benign	Het
Zfp235	A	G	7: 23,841,551 (GRCm39)	S657G	probably damaging	Het
Zfp442	T	A	2: 150,251,615 (GRCm39)	I96F	possibly damaging	Het
Zfp84	G	A	7: 29,476,297 (GRCm39)	E330K	probably damaging	Het

Other mutations in Fmo9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00886:Fmo9	APN	1	166,507,714 (GRCm39)	splice site	probably null
IGL01796:Fmo9	APN	1	166,490,904 (GRCm39)	missense	probably benign	0.31
IGL03005:Fmo9	APN	1	166,502,088 (GRCm39)	missense	probably benign	0.02
IGL03115:Fmo9	APN	1	166,505,220 (GRCm39)	missense	probably damaging	1.00
IGL03163:Fmo9	APN	1	166,502,019 (GRCm39)	missense	possibly damaging	0.77
R0089:Fmo9	UTSW	1	166,494,878 (GRCm39)	missense	probably benign	0.05
R0570:Fmo9	UTSW	1	166,502,031 (GRCm39)	missense	probably null	0.00
R1520:Fmo9	UTSW	1	166,495,024 (GRCm39)	missense	probably benign	0.19
R1779:Fmo9	UTSW	1	166,490,868 (GRCm39)	missense	probably benign	0.18
R1783:Fmo9	UTSW	1	166,501,217 (GRCm39)	missense	probably benign	0.01
R2858:Fmo9	UTSW	1	166,501,236 (GRCm39)	missense	probably damaging	1.00
R2859:Fmo9	UTSW	1	166,501,236 (GRCm39)	missense	probably damaging	1.00
R3851:Fmo9	UTSW	1	166,490,936 (GRCm39)	missense	probably benign	0.00
R3924:Fmo9	UTSW	1	166,492,221 (GRCm39)	missense	probably benign	0.03
R4470:Fmo9	UTSW	1	166,507,799 (GRCm39)	missense	probably damaging	1.00
R4728:Fmo9	UTSW	1	166,490,880 (GRCm39)	missense	possibly damaging	0.82
R5538:Fmo9	UTSW	1	166,501,198 (GRCm39)	missense	probably benign	0.01
R5650:Fmo9	UTSW	1	166,491,015 (GRCm39)	missense	probably damaging	1.00
R5820:Fmo9	UTSW	1	166,492,170 (GRCm39)	missense	possibly damaging	0.67
R6163:Fmo9	UTSW	1	166,494,962 (GRCm39)	missense	probably benign
R6229:Fmo9	UTSW	1	166,505,126 (GRCm39)	missense	possibly damaging	0.64
R6243:Fmo9	UTSW	1	166,494,938 (GRCm39)	missense	probably benign	0.45
R6375:Fmo9	UTSW	1	166,492,164 (GRCm39)	critical splice donor site	probably null
R7144:Fmo9	UTSW	1	166,505,189 (GRCm39)	missense	probably benign	0.40
R7236:Fmo9	UTSW	1	166,504,140 (GRCm39)	missense	probably damaging	1.00
R7316:Fmo9	UTSW	1	166,491,215 (GRCm39)	missense	probably benign	0.21
R7341:Fmo9	UTSW	1	166,504,115 (GRCm39)	missense	probably damaging	1.00
R7382:Fmo9	UTSW	1	166,491,229 (GRCm39)	splice site	probably null
R7589:Fmo9	UTSW	1	166,501,997 (GRCm39)	missense	possibly damaging	0.61
R7679:Fmo9	UTSW	1	166,495,058 (GRCm39)	missense	probably benign	0.01
R8110:Fmo9	UTSW	1	166,491,095 (GRCm39)	missense	probably benign	0.03
R8500:Fmo9	UTSW	1	166,502,039 (GRCm39)	missense	probably damaging	1.00
R9098:Fmo9	UTSW	1	166,492,199 (GRCm39)	missense	possibly damaging	0.48
R9301:Fmo9	UTSW	1	166,494,794 (GRCm39)	missense	probably damaging	1.00
R9400:Fmo9	UTSW	1	166,505,243 (GRCm39)	missense	probably benign	0.09
Z1088:Fmo9	UTSW	1	166,501,114 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- AACTCTTGCATGTCCACAGG -3'
(R):5'- TCTAGAAAATATGGGGACTGGGTTG -3'

Sequencing Primer
(F):5'- GTCCACAGGTAAGTATATTTGTCCAC -3'
(R):5'- ACTGGGTTGGGGGTAAACATTAGC -3'

Posted On

2022-05-16