Mutagenetix > Incidental Mutation

Incidental Mutation 'R9402:Vmn1r43'

711283

Institutional Source

Beutler Lab

Gene Symbol

Vmn1r43

Ensembl Gene

ENSMUSG00000068231

Gene Name

vomeronasal 1 receptor 43

Synonyms

V1ra5

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.054) question?

Stock #

R9402 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

89846443-89847511 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 89846877 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Methionine at position 203 (T203M)

Ref Sequence

ENSEMBL: ENSMUSP00000086839 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000089418] [ENSMUST00000226741] [ENSMUST00000226983] [ENSMUST00000227279] [ENSMUST00000228709]

AlphaFold

Q8VIC9

Predicted Effect

probably damaging
Transcript: ENSMUST00000089418
AA Change: T203M

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000086839
Gene: ENSMUSG00000068231
AA Change: T203M

Domain	Start	End	E-Value	Type
Pfam:V1R	54	318	2.9e-126	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000226741
AA Change: T203M

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

Predicted Effect

probably damaging
Transcript: ENSMUST00000226983
AA Change: T203M

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

Predicted Effect

probably benign
Transcript: ENSMUST00000227279

Predicted Effect

probably damaging
Transcript: ENSMUST00000228709
AA Change: T203M

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

Meta Mutation Damage Score

0.6329

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca9	T	A	11: 110,049,154 (GRCm39)	Q218L	probably benign	Het
Atg2b	A	G	12: 105,614,682 (GRCm39)	F1083S	probably damaging	Het
Bche	T	C	3: 73,608,656 (GRCm39)	N257D	probably benign	Het
Cfap221	T	A	1: 119,860,551 (GRCm39)	M692L	probably benign	Het
Cfap46	G	T	7: 139,215,865 (GRCm39)	P1530Q	unknown	Het
Crim1	CCGC	CC	17: 78,658,294 (GRCm39)		probably null	Het
Cyp4f39	T	C	17: 32,710,183 (GRCm39)		probably null	Het
Daam1	A	G	12: 72,006,604 (GRCm39)	T674A	probably benign	Het
Elp2	A	T	18: 24,759,220 (GRCm39)	I526L	probably benign	Het
Exoc4	T	A	6: 33,453,078 (GRCm39)	*523K	probably null	Het
Fbxl7	G	A	15: 26,552,589 (GRCm39)	S226L	probably damaging	Het
Fbxl9	T	A	8: 106,049,988 (GRCm39)	Y12F	probably benign	Het
Fry	G	A	5: 150,357,161 (GRCm39)	E1903K	possibly damaging	Het
Fry	G	A	5: 150,360,318 (GRCm39)	R1988K	probably damaging	Het
Gas1	A	T	13: 60,324,016 (GRCm39)	M206K	probably damaging	Het
Gbp10	T	A	5: 105,381,863 (GRCm39)	T96S	possibly damaging	Het
Gm14569	G	A	X: 35,694,549 (GRCm39)	P1387S	probably damaging	Het
Gpaa1	A	G	15: 76,216,418 (GRCm39)	T105A	probably benign	Het
Hoxc13	C	A	15: 102,830,051 (GRCm39)	C143*	probably null	Het
Htt	T	C	5: 35,006,324 (GRCm39)	I1411T	probably damaging	Het
Inava	T	G	1: 136,155,348 (GRCm39)	S86R	probably benign	Het
Jmy	C	T	13: 93,635,678 (GRCm39)	C46Y	probably damaging	Het
Klhl40	A	G	9: 121,609,482 (GRCm39)	Y453C	possibly damaging	Het
Krit1	T	A	5: 3,872,210 (GRCm39)	Y460N	possibly damaging	Het
Lamb3	C	A	1: 193,013,704 (GRCm39)	T526K		Het
Luzp1	T	A	4: 136,270,493 (GRCm39)	H905Q	probably damaging	Het
Lyst	T	A	13: 13,812,463 (GRCm39)	H958Q	probably benign	Het
Magi1	T	C	6: 94,260,278 (GRCm39)	N9S	probably benign	Het
Mmadhc	A	T	2: 50,171,119 (GRCm39)	V231E	probably benign	Het
Muc5b	T	A	7: 141,399,151 (GRCm39)	M364K	unknown	Het
Nae1	A	G	8: 105,254,817 (GRCm39)		probably null	Het
Ndst4	C	T	3: 125,518,385 (GRCm39)	S354L	probably benign	Het
Nlgn2	A	G	11: 69,718,933 (GRCm39)	F252S		Het
Nlrp9a	A	T	7: 26,270,030 (GRCm39)	N874I	possibly damaging	Het
Nodal	T	C	10: 61,259,379 (GRCm39)	I272T	probably damaging	Het
Or4a15	C	A	2: 89,193,123 (GRCm39)	G217*	probably null	Het
Or4c12	A	T	2: 89,774,284 (GRCm39)	Y58*	probably null	Het
Or51a24	G	A	7: 103,733,610 (GRCm39)	R226*	probably null	Het
Or52ab4	T	C	7: 102,988,196 (GRCm39)	S312P	probably benign	Het
Orm1	C	A	4: 63,263,369 (GRCm39)	Q61K	possibly damaging	Het
Pcdh17	T	C	14: 84,684,646 (GRCm39)	V371A	probably damaging	Het
Pcdhb19	C	T	18: 37,632,532 (GRCm39)	Q776*	probably null	Het
Phf14	A	G	6: 11,933,779 (GRCm39)	R214G	possibly damaging	Het
Phf3	G	A	1: 30,850,928 (GRCm39)	T1142M	probably damaging	Het
Pigz	A	G	16: 31,764,187 (GRCm39)	E415G	probably damaging	Het
Pramel5	T	C	4: 143,998,026 (GRCm39)	T406A	probably benign	Het
Prtg	A	G	9: 72,819,253 (GRCm39)	E1082G	probably benign	Het
Rtp3	A	G	9: 110,815,031 (GRCm39)	C445R	unknown	Het
Scn3b	A	T	9: 40,193,852 (GRCm39)	E193V	probably damaging	Het
Scn7a	A	T	2: 66,510,456 (GRCm39)	N1315K	probably damaging	Het
Snx14	C	T	9: 88,289,490 (GRCm39)	G254D	probably damaging	Het
Srbd1	T	C	17: 86,406,705 (GRCm39)	D560G	probably benign	Het
Srp72	T	A	5: 77,124,329 (GRCm39)	L65*	probably null	Het
Steap1	T	A	5: 5,790,664 (GRCm39)	I95F		Het
Taf3	A	G	2: 9,955,923 (GRCm39)		probably null	Het
Taok2	T	C	7: 126,469,400 (GRCm39)	N1143D		Het
Tas2r114	C	T	6: 131,666,894 (GRCm39)	G45S	possibly damaging	Het
Tcerg1l	T	C	7: 137,811,551 (GRCm39)	K548E	probably damaging	Het
Tcp1	T	A	17: 13,141,505 (GRCm39)	L328Q	probably benign	Het
Tns2	A	G	15: 102,021,623 (GRCm39)	H1096R	probably damaging	Het
Trps1	A	T	15: 50,709,652 (GRCm39)	Y233N	probably damaging	Het
Tubgcp6	A	G	15: 88,987,064 (GRCm39)	V1303A	probably benign	Het
Ugt1a2	T	C	1: 88,128,684 (GRCm39)	F109S	possibly damaging	Het
Zfp748	A	G	13: 67,693,511 (GRCm39)	V54A	probably benign	Het

Other mutations in Vmn1r43

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01748:Vmn1r43	APN	6	89,847,294 (GRCm39)	missense	probably damaging	1.00
IGL02476:Vmn1r43	APN	6	89,847,043 (GRCm39)	missense	possibly damaging	0.95
IGL02958:Vmn1r43	APN	6	89,847,031 (GRCm39)	missense	probably benign	0.09
R0413:Vmn1r43	UTSW	6	89,846,830 (GRCm39)	missense	probably damaging	1.00
R1662:Vmn1r43	UTSW	6	89,846,572 (GRCm39)	missense	possibly damaging	0.76
R1668:Vmn1r43	UTSW	6	89,846,683 (GRCm39)	missense	probably benign	0.01
R4419:Vmn1r43	UTSW	6	89,846,629 (GRCm39)	missense	probably benign	0.01
R4719:Vmn1r43	UTSW	6	89,846,837 (GRCm39)	missense	probably benign	0.02
R4798:Vmn1r43	UTSW	6	89,846,892 (GRCm39)	missense	probably benign	0.01
R5520:Vmn1r43	UTSW	6	89,846,728 (GRCm39)	missense	probably damaging	0.98
R5643:Vmn1r43	UTSW	6	89,847,354 (GRCm39)	missense	probably damaging	1.00
R5644:Vmn1r43	UTSW	6	89,847,354 (GRCm39)	missense	probably damaging	1.00
R5717:Vmn1r43	UTSW	6	89,846,905 (GRCm39)	missense	probably damaging	1.00
R6647:Vmn1r43	UTSW	6	89,846,841 (GRCm39)	missense	probably damaging	1.00
R6914:Vmn1r43	UTSW	6	89,847,319 (GRCm39)	missense	probably benign	0.02
R6942:Vmn1r43	UTSW	6	89,847,319 (GRCm39)	missense	probably benign	0.02
R7092:Vmn1r43	UTSW	6	89,846,885 (GRCm39)	missense	probably benign	0.02
R7402:Vmn1r43	UTSW	6	89,846,803 (GRCm39)	missense	probably benign	0.02
R7457:Vmn1r43	UTSW	6	89,847,172 (GRCm39)	missense	probably damaging	0.98
R7572:Vmn1r43	UTSW	6	89,846,547 (GRCm39)	missense	possibly damaging	0.93
R7807:Vmn1r43	UTSW	6	89,847,219 (GRCm39)	missense	probably benign	0.07
R8406:Vmn1r43	UTSW	6	89,847,414 (GRCm39)	missense	possibly damaging	0.55
R8696:Vmn1r43	UTSW	6	89,847,321 (GRCm39)	missense	probably damaging	0.99
R8859:Vmn1r43	UTSW	6	89,846,937 (GRCm39)	missense	probably damaging	1.00
R8894:Vmn1r43	UTSW	6	89,846,746 (GRCm39)	missense	probably benign	0.02
R9072:Vmn1r43	UTSW	6	89,846,877 (GRCm39)	missense	probably damaging	1.00
R9073:Vmn1r43	UTSW	6	89,846,877 (GRCm39)	missense	probably damaging	1.00
R9075:Vmn1r43	UTSW	6	89,846,877 (GRCm39)	missense	probably damaging	1.00
R9076:Vmn1r43	UTSW	6	89,846,877 (GRCm39)	missense	probably damaging	1.00
R9237:Vmn1r43	UTSW	6	89,846,877 (GRCm39)	missense	probably damaging	1.00
R9239:Vmn1r43	UTSW	6	89,846,877 (GRCm39)	missense	probably damaging	1.00
R9240:Vmn1r43	UTSW	6	89,846,877 (GRCm39)	missense	probably damaging	1.00
R9293:Vmn1r43	UTSW	6	89,846,877 (GRCm39)	missense	probably damaging	1.00
R9383:Vmn1r43	UTSW	6	89,846,552 (GRCm39)	missense	possibly damaging	0.94
R9398:Vmn1r43	UTSW	6	89,846,877 (GRCm39)	missense	probably damaging	1.00
R9399:Vmn1r43	UTSW	6	89,846,877 (GRCm39)	missense	probably damaging	1.00
R9401:Vmn1r43	UTSW	6	89,846,877 (GRCm39)	missense	probably damaging	1.00
R9594:Vmn1r43	UTSW	6	89,846,877 (GRCm39)	missense	probably damaging	1.00
R9595:Vmn1r43	UTSW	6	89,846,877 (GRCm39)	missense	probably damaging	1.00
R9596:Vmn1r43	UTSW	6	89,846,877 (GRCm39)	missense	probably damaging	1.00
R9624:Vmn1r43	UTSW	6	89,846,877 (GRCm39)	missense	probably damaging	1.00
R9628:Vmn1r43	UTSW	6	89,846,877 (GRCm39)	missense	probably damaging	1.00
R9656:Vmn1r43	UTSW	6	89,847,440 (GRCm39)	missense	possibly damaging	0.47
X0020:Vmn1r43	UTSW	6	89,847,316 (GRCm39)	missense	probably benign	0.00
Z1177:Vmn1r43	UTSW	6	89,847,467 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- GGTCATGAGCATCAGGATGG -3'
(R):5'- CCATCATTCTTAGTCCCAGAAGC -3'

Sequencing Primer
(F):5'- CATCAGGATGGTCTGGGTAGCAC -3'
(R):5'- GTCCCAGAAGCTCCTGTTTATCAAAG -3'

Posted On

2022-05-16