Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL00336:Pex16'

7114

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Pex16

Ensembl Gene

ENSMUSG00000027222

Gene Name

peroxisomal biogenesis factor 16

Synonyms

peroxisome biogenesis factor 16

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.454) question?

Stock #

IGL00336

Quality Score

Status

Chromosome

Chromosomal Location

92374676-92381217 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 92379235 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Glycine at position 263 (R263G)

Ref Sequence

ENSEMBL: ENSMUSP00000028650 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028650] [ENSMUST00000050312] [ENSMUST00000054316] [ENSMUST00000111279] [ENSMUST00000111280] [ENSMUST00000176339] [ENSMUST00000191292]

AlphaFold

Q91XC9

Predicted Effect

probably benign
Transcript: ENSMUST00000028650
AA Change: R263G

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000028650
Gene: ENSMUSG00000027222
AA Change: R263G

Domain	Start	End	E-Value	Type
Pfam:Pex16	9	329	1.3e-91	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000050312

SMART Domains

Protein: ENSMUSP00000050773
Gene: ENSMUSG00000027223

Domain	Start	End	E-Value	Type
low complexity region	6	24	N/A	INTRINSIC
low complexity region	38	51	N/A	INTRINSIC
low complexity region	71	87	N/A	INTRINSIC
low complexity region	98	119	N/A	INTRINSIC
low complexity region	242	254	N/A	INTRINSIC
low complexity region	462	477	N/A	INTRINSIC
SH3	487	544	2.62e-11	SMART
PTB	558	700	1.2e-43	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000054316

SMART Domains

Protein: ENSMUSP00000051464
Gene: ENSMUSG00000044916

Domain	Start	End	E-Value	Type
Pfam:DUF4733	4	97	7.7e-50	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000111279

SMART Domains

Protein: ENSMUSP00000106910
Gene: ENSMUSG00000027223

Domain	Start	End	E-Value	Type
low complexity region	29	42	N/A	INTRINSIC
low complexity region	62	78	N/A	INTRINSIC
low complexity region	89	110	N/A	INTRINSIC
low complexity region	233	245	N/A	INTRINSIC
low complexity region	453	468	N/A	INTRINSIC
SH3	478	535	2.62e-11	SMART
PTB	549	691	1.2e-43	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000111280

SMART Domains

Protein: ENSMUSP00000106911
Gene: ENSMUSG00000044916

Domain	Start	End	E-Value	Type
transmembrane domain	10	29	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148386

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154669

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000155891

Predicted Effect

probably benign
Transcript: ENSMUST00000176339

SMART Domains

Protein: ENSMUSP00000135619
Gene: ENSMUSG00000040434

Domain	Start	End	E-Value	Type
transmembrane domain	31	50	N/A	INTRINSIC
low complexity region	74	85	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000189714

Predicted Effect

probably benign
Transcript: ENSMUST00000191292

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is an integral peroxisomal membrane protein. An inactivating nonsense mutation localized to this gene was observed in a patient with Zellweger syndrome of the complementation group CGD/CG9. Expression of this gene product morphologically and biochemically restores the formation of new peroxisomes, suggesting a role in peroxisome organization and biogenesis. Alternative splicing has been observed for this gene and two variants have been described. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2010111I01Rik	A	T	13: 63,015,423	D86V	possibly damaging	Het
A430033K04Rik	A	G	5: 138,647,104	Y417C	probably damaging	Het
Adam28	T	A	14: 68,622,120	H548L	possibly damaging	Het
AF529169	T	C	9: 89,603,143	D67G	probably damaging	Het
Agbl3	A	T	6: 34,846,836	D812V	probably damaging	Het
Aox1	T	A	1: 58,059,044	L305Q	probably damaging	Het
Arhgef38	A	G	3: 133,132,051	V706A	probably benign	Het
Arl15	A	G	13: 114,154,752	I171V	probably benign	Het
Cacna1s	C	A	1: 136,084,273	Y237*	probably null	Het
Ccnt1	T	C	15: 98,565,109	T61A	possibly damaging	Het
Col25a1	T	A	3: 130,181,784		probably benign	Het
Col4a1	T	A	8: 11,240,077		probably benign	Het
Dcun1d1	T	C	3: 35,916,306	E130G	possibly damaging	Het
Dnah7b	G	A	1: 46,142,149	M1065I	probably benign	Het
Ephb2	T	G	4: 136,657,484	K872T	probably damaging	Het
Fga	G	A	3: 83,031,674	G452D	probably damaging	Het
Flrt1	T	A	19: 7,096,912	N90I	probably damaging	Het
Fut10	T	A	8: 31,195,291		probably null	Het
Gm4553	T	C	7: 142,165,227	S155G	unknown	Het
Gpr137b	T	C	13: 13,374,415		probably benign	Het
Gprc5d	G	A	6: 135,116,490	Q140*	probably null	Het
Ifi27l2b	T	C	12: 103,451,217	K237R	unknown	Het
Ipo8	A	T	6: 148,782,786	M836K	possibly damaging	Het
Kcnq4	G	A	4: 120,698,016	Q657*	probably null	Het
Lama1	A	T	17: 67,813,948	H2693L	probably benign	Het
Lrrc23	A	G	6: 124,778,926	W40R	probably damaging	Het
Morn2	C	A	17: 80,295,504		probably benign	Het
Ms4a6b	T	A	19: 11,529,490	N214K	possibly damaging	Het
Nags	A	T	11: 102,149,066	S527C	probably damaging	Het
Ndst1	C	T	18: 60,707,956	G218D	probably damaging	Het
Olfr1097	C	T	2: 86,890,245	C310Y	probably benign	Het
Olfr1442	T	A	19: 12,674,560	Y118*	probably null	Het
Olfr16	G	A	1: 172,957,478	V228M	probably benign	Het
Oxa1l	G	T	14: 54,363,345	G92*	probably null	Het
Parp16	A	T	9: 65,229,963	E157V	probably damaging	Het
Pcdh17	A	T	14: 84,447,544	I484F	probably damaging	Het
Pkd1l3	G	A	8: 109,630,237	E765K	possibly damaging	Het
Plce1	T	C	19: 38,651,906	V532A	probably damaging	Het
Polq	A	G	16: 37,065,247		probably benign	Het
Pramel5	T	C	4: 144,271,621	T351A	probably damaging	Het
Prokr1	A	T	6: 87,588,611	I84N	probably damaging	Het
Prss30	A	T	17: 23,973,721	S162T	probably benign	Het
Ranbp2	A	G	10: 58,451,984	K25E	probably damaging	Het
Rapsn	A	G	2: 91,035,860	T22A	probably damaging	Het
Rhoj	G	T	12: 75,308,906	G9V	probably damaging	Het
Rnf213	A	G	11: 119,449,343	R3467G	probably benign	Het
Rreb1	C	A	13: 37,929,646	S327*	probably null	Het
Scn5a	G	A	9: 119,486,224	P1806L	probably damaging	Het
Sema6a	C	A	18: 47,289,975		probably null	Het
Stag3	G	A	5: 138,297,659	E416K	probably benign	Het
Stpg1	T	A	4: 135,529,545	S216T	possibly damaging	Het
Tfeb	C	A	17: 47,791,664	N426K	probably benign	Het
Trp53bp1	G	T	2: 121,256,579	Q199K	possibly damaging	Het
Ubr4	A	G	4: 139,428,566	D2234G	probably damaging	Het
Ush1c	T	G	7: 46,196,770	Q866P	probably benign	Het
Vdr	T	A	15: 97,884,854	D29V	probably damaging	Het
Vps13c	T	C	9: 67,945,942	V2439A	probably benign	Het
Xirp2	T	C	2: 67,512,598	S1728P	possibly damaging	Het
Zfp9	A	G	6: 118,464,475	S409P	probably damaging	Het

Other mutations in Pex16

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01733:Pex16	APN	2	92378828	missense	probably damaging	1.00
IGL02642:Pex16	APN	2	92376636	missense	probably damaging	1.00
IGL03350:Pex16	APN	2	92377497	missense	probably damaging	0.97
R0143:Pex16	UTSW	2	92380457	missense	probably damaging	1.00
R0226:Pex16	UTSW	2	92375687	unclassified	probably benign
R0278:Pex16	UTSW	2	92381056	missense	probably damaging	1.00
R0375:Pex16	UTSW	2	92380457	missense	probably damaging	1.00
R0437:Pex16	UTSW	2	92375592	missense	probably damaging	1.00
R0540:Pex16	UTSW	2	92375637	nonsense	probably null
R4809:Pex16	UTSW	2	92376638	missense	probably damaging	1.00
R4841:Pex16	UTSW	2	92379199	splice site	probably null
R4952:Pex16	UTSW	2	92379060	nonsense	probably null
R5382:Pex16	UTSW	2	92377530	missense	possibly damaging	0.85
R8144:Pex16	UTSW	2	92375640	missense	probably damaging	1.00
R8810:Pex16	UTSW	2	92379021	unclassified	probably benign
R9511:Pex16	UTSW	2	92379214	critical splice acceptor site	probably null
R9712:Pex16	UTSW	2	92376643	missense	probably damaging	0.98

Posted On

2012-04-20