Incidental Mutation 'R9432:Eml1'
ID 713045
Institutional Source Beutler Lab
Gene Symbol Eml1
Ensembl Gene ENSMUSG00000058070
Gene Name echinoderm microtubule associated protein like 1
Synonyms 1110008N23Rik, heco, A930030P13Rik, ELP79
MMRRC Submission
Accession Numbers
Essential gene? Probably non essential (E-score: 0.160) question?
Stock # R9432 (G1)
Quality Score 225.009
Status Not validated
Chromosome 12
Chromosomal Location 108337265-108505835 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 108482842 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Serine at position 487 (N487S)
Ref Sequence ENSEMBL: ENSMUSP00000105486 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000054955] [ENSMUST00000109857] [ENSMUST00000109860] [ENSMUST00000130999]
AlphaFold Q05BC3
Predicted Effect probably benign
Transcript: ENSMUST00000054955
AA Change: N456S

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
SMART Domains Protein: ENSMUSP00000057209
Gene: ENSMUSG00000058070
AA Change: N456S

DomainStartEndE-ValueType
coiled coil region 1 41 N/A INTRINSIC
low complexity region 72 84 N/A INTRINSIC
low complexity region 119 146 N/A INTRINSIC
WD40 228 277 5.6e-3 SMART
WD40 280 325 2.21e1 SMART
WD40 328 367 4.46e-1 SMART
WD40 375 413 5.73e0 SMART
WD40 416 456 5.75e-1 SMART
WD40 496 539 4.24e-3 SMART
WD40 542 580 1.37e2 SMART
WD40 583 622 1.7e-2 SMART
WD40 629 668 1.58e-2 SMART
Blast:WD40 694 735 7e-20 BLAST
WD40 741 781 2.96e-2 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000109857
AA Change: N473S

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000105483
Gene: ENSMUSG00000058070
AA Change: N473S

DomainStartEndE-ValueType
coiled coil region 1 41 N/A INTRINSIC
low complexity region 72 84 N/A INTRINSIC
low complexity region 119 146 N/A INTRINSIC
WD40 245 294 5.6e-3 SMART
WD40 297 342 2.21e1 SMART
WD40 345 384 4.46e-1 SMART
WD40 392 430 5.73e0 SMART
WD40 433 473 5.75e-1 SMART
WD40 513 556 4.24e-3 SMART
WD40 559 597 1.37e2 SMART
WD40 600 639 1.7e-2 SMART
WD40 646 685 1.58e-2 SMART
Blast:WD40 711 752 7e-20 BLAST
WD40 758 798 2.96e-2 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000109860
AA Change: N487S

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
SMART Domains Protein: ENSMUSP00000105486
Gene: ENSMUSG00000058070
AA Change: N487S

DomainStartEndE-ValueType
low complexity region 6 18 N/A INTRINSIC
coiled coil region 31 72 N/A INTRINSIC
low complexity region 103 115 N/A INTRINSIC
low complexity region 150 177 N/A INTRINSIC
Pfam:HELP 184 258 1.8e-35 PFAM
WD40 259 308 5.6e-3 SMART
WD40 311 356 2.21e1 SMART
WD40 359 398 4.46e-1 SMART
WD40 406 444 5.73e0 SMART
WD40 447 487 5.75e-1 SMART
WD40 527 570 4.24e-3 SMART
WD40 573 611 1.37e2 SMART
WD40 614 653 1.7e-2 SMART
WD40 660 699 1.58e-2 SMART
Blast:WD40 725 766 7e-20 BLAST
WD40 772 812 2.96e-2 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000130999
AA Change: N487S

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
SMART Domains Protein: ENSMUSP00000118325
Gene: ENSMUSG00000058070
AA Change: N487S

DomainStartEndE-ValueType
low complexity region 6 18 N/A INTRINSIC
coiled coil region 31 72 N/A INTRINSIC
low complexity region 103 115 N/A INTRINSIC
low complexity region 150 177 N/A INTRINSIC
WD40 259 308 5.6e-3 SMART
WD40 311 356 2.21e1 SMART
WD40 359 398 4.46e-1 SMART
WD40 406 444 5.73e0 SMART
WD40 447 487 5.75e-1 SMART
WD40 527 570 4.24e-3 SMART
WD40 573 611 1.37e2 SMART
WD40 614 653 1.7e-2 SMART
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 99.0%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Human echinoderm microtubule-associated protein-like is a strong candidate for the Usher syndrome type 1A gene. Usher syndromes (USHs) are a group of genetic disorders consisting of congenital deafness, retinitis pigmentosa, and vestibular dysfunction of variable onset and severity depending on the genetic type. The disease process in USHs involves the entire brain and is not limited to the posterior fossa or auditory and visual systems. The USHs are catagorized as type I (USH1A, USH1B, USH1C, USH1D, USH1E and USH1F), type II (USH2A and USH2B) and type III (USH3). The type I is the most severe form. Gene loci responsible for these three types are all mapped. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a spontaneous mutation exhibit subcortical band heterotopia associated with seizures, developmental delay and behavioral deficits. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 83 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930522L14Rik T C 5: 109,884,917 (GRCm39) R314G unknown Het
Abca13 G A 11: 9,244,559 (GRCm39) V2141M probably benign Het
Abcc10 G A 17: 46,634,710 (GRCm39) A431V possibly damaging Het
Acod1 A G 14: 103,292,414 (GRCm39) R313G probably damaging Het
Adam3 G T 8: 25,193,928 (GRCm39) S361R probably damaging Het
Ahcyl2 C T 6: 29,768,874 (GRCm39) T113M possibly damaging Het
Ano8 C A 8: 71,933,561 (GRCm39) R577L unknown Het
Arhgef7 T A 8: 11,869,646 (GRCm39) S653R probably damaging Het
Atp10a G A 7: 58,469,418 (GRCm39) V1090I possibly damaging Het
Birc6 A G 17: 74,966,216 (GRCm39) M4048V probably benign Het
C3 G A 17: 57,530,950 (GRCm39) P384S probably damaging Het
Camkk1 A T 11: 72,928,757 (GRCm39) E432V probably damaging Het
Celsr3 T A 9: 108,726,032 (GRCm39) V3087D probably benign Het
Ckap4 A G 10: 84,363,543 (GRCm39) S507P probably damaging Het
Coq6 G A 12: 84,420,464 (GRCm39) M471I probably benign Het
Csmd2 C A 4: 128,171,004 (GRCm39) H332Q Het
Cxcr1 T A 1: 74,231,231 (GRCm39) N264Y probably damaging Het
Dchs2 C A 3: 83,036,032 (GRCm39) R260S possibly damaging Het
Elmod2 C A 8: 84,057,761 (GRCm39) A41S possibly damaging Het
Emilin2 G A 17: 71,581,781 (GRCm39) T315I probably benign Het
Epn1 G T 7: 5,096,369 (GRCm39) R221L probably benign Het
Faah A G 4: 115,874,772 (GRCm39) V28A probably benign Het
Fbl G A 7: 27,876,689 (GRCm39) R230H probably benign Het
Fsip2 C T 2: 82,805,907 (GRCm39) S742F probably damaging Het
Gm5460 A G 14: 33,767,769 (GRCm39) D184G possibly damaging Het
Gpatch2l T C 12: 86,307,408 (GRCm39) V262A probably damaging Het
Grin2c A T 11: 115,142,052 (GRCm39) L789* probably null Het
H1f0 C T 15: 78,912,947 (GRCm39) P9L probably damaging Het
Hectd4 A G 5: 121,460,864 (GRCm39) T948A probably benign Het
Herc2 G A 7: 55,780,932 (GRCm39) G1199D probably damaging Het
Hoxb7 G T 11: 96,177,617 (GRCm39) A22S possibly damaging Het
Ifih1 T A 2: 62,439,618 (GRCm39) I519F probably damaging Het
Ifit1bl1 T A 19: 34,571,498 (GRCm39) I320F possibly damaging Het
Iqgap2 T C 13: 95,774,261 (GRCm39) T1320A probably benign Het
Kat2a A G 11: 100,602,178 (GRCm39) V192A probably damaging Het
Kat6b A C 14: 21,672,077 (GRCm39) H329P probably damaging Het
Klhl29 A G 12: 5,260,056 (GRCm39) L54P probably benign Het
Kntc1 A T 5: 123,925,112 (GRCm39) I1142F possibly damaging Het
Lipo3 A G 19: 33,533,864 (GRCm39) Y323H probably damaging Het
Lmtk3 G A 7: 45,441,994 (GRCm39) V351I probably damaging Het
Lrrc8b T C 5: 105,633,888 (GRCm39) S787P probably benign Het
Magi1 A G 6: 93,660,058 (GRCm39) I1179T probably damaging Het
Mapk11 T C 15: 89,028,631 (GRCm39) D269G probably benign Het
Mfsd13a T G 19: 46,354,868 (GRCm39) I15R probably benign Het
Myo1h G A 5: 114,499,366 (GRCm39) V143I possibly damaging Het
Naaladl1 T C 19: 6,156,917 (GRCm39) I187T possibly damaging Het
Nos1 G A 5: 118,034,871 (GRCm39) V416M probably damaging Het
Or14a256 G A 7: 86,265,065 (GRCm39) R263C possibly damaging Het
Or14j8 A G 17: 38,263,559 (GRCm39) S119P probably damaging Het
Or8k30 T G 2: 86,338,914 (GRCm39) I37S probably benign Het
Pcdh15 A G 10: 74,460,170 (GRCm39) T1373A probably damaging Het
Pcdh18 T G 3: 49,699,667 (GRCm39) M932L probably damaging Het
Pcdhb15 T A 18: 37,608,683 (GRCm39) H638Q probably benign Het
Pcdhb19 A G 18: 37,630,628 (GRCm39) E141G possibly damaging Het
Pds5b T G 5: 150,693,256 (GRCm39) L656R probably damaging Het
Plcl1 T C 1: 55,445,587 (GRCm39) L14P probably benign Het
Pzp A T 6: 128,499,128 (GRCm39) I173N Het
Rnf123 C T 9: 107,937,008 (GRCm39) R849H probably damaging Het
Sfrp5 T C 19: 42,188,225 (GRCm39) D198G probably damaging Het
Sftpb G C 6: 72,283,843 (GRCm39) A147P probably benign Het
Shank1 G A 7: 43,962,342 (GRCm39) S71N unknown Het
Slc30a6 A G 17: 74,719,699 (GRCm39) T220A possibly damaging Het
Slc5a3 T A 16: 91,874,615 (GRCm39) V224D probably benign Het
Smad5 T A 13: 56,875,417 (GRCm39) Y202N probably benign Het
Smok2b A G 17: 13,453,881 (GRCm39) I14V probably damaging Het
Tas2r108 T A 6: 40,471,121 (GRCm39) I199K probably damaging Het
Tcea2 A G 2: 181,322,227 (GRCm39) I10V probably damaging Het
Tfg G A 16: 56,524,868 (GRCm39) R113* probably null Het
Tubb4a A T 17: 57,388,034 (GRCm39) L331I probably benign Het
Ugt2b37 A G 5: 87,402,046 (GRCm39) V195A probably damaging Het
Umad1 A G 6: 8,401,096 (GRCm39) H55R unknown Het
Vmn1r176 A T 7: 23,534,743 (GRCm39) Y137N probably damaging Het
Vmn1r44 T A 6: 89,870,473 (GRCm39) M73K possibly damaging Het
Vmn2r112 A G 17: 22,821,233 (GRCm39) T69A Het
Vmn2r59 A T 7: 41,696,254 (GRCm39) Y163N probably damaging Het
Vps13c T A 9: 67,830,137 (GRCm39) D1514E probably benign Het
Vsir A G 10: 60,193,732 (GRCm39) D65G possibly damaging Het
Ypel3 A T 7: 126,379,262 (GRCm39) M112L probably benign Het
Zfp26 T A 9: 20,347,830 (GRCm39) K911N probably damaging Het
Zfp362 C T 4: 128,670,980 (GRCm39) R346Q probably damaging Het
Zfp595 A T 13: 67,465,407 (GRCm39) Y288* probably null Het
Zfyve28 G T 5: 34,400,633 (GRCm39) Q22K possibly damaging Het
Zswim4 T G 8: 84,963,539 (GRCm39) D32A probably damaging Het
Other mutations in Eml1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00770:Eml1 APN 12 108,480,774 (GRCm39) splice site probably null
IGL00774:Eml1 APN 12 108,480,774 (GRCm39) splice site probably null
IGL01358:Eml1 APN 12 108,480,727 (GRCm39) missense probably benign 0.05
IGL02316:Eml1 APN 12 108,501,018 (GRCm39) intron probably benign
IGL02346:Eml1 APN 12 108,503,700 (GRCm39) missense possibly damaging 0.87
IGL02480:Eml1 APN 12 108,487,955 (GRCm39) missense probably benign 0.32
IGL02513:Eml1 APN 12 108,496,571 (GRCm39) missense probably damaging 1.00
IGL02556:Eml1 APN 12 108,503,625 (GRCm39) missense probably benign 0.00
IGL02565:Eml1 APN 12 108,472,779 (GRCm39) missense probably damaging 1.00
IGL03217:Eml1 APN 12 108,501,201 (GRCm39) missense probably benign 0.31
bubble UTSW 12 108,479,330 (GRCm39) critical splice donor site probably null
R0027:Eml1 UTSW 12 108,502,557 (GRCm39) missense possibly damaging 0.90
R0067:Eml1 UTSW 12 108,429,786 (GRCm39) missense possibly damaging 0.61
R0124:Eml1 UTSW 12 108,475,437 (GRCm39) missense probably damaging 1.00
R0124:Eml1 UTSW 12 108,472,867 (GRCm39) missense probably benign 0.00
R0730:Eml1 UTSW 12 108,496,585 (GRCm39) missense possibly damaging 0.79
R1566:Eml1 UTSW 12 108,438,151 (GRCm39) missense probably damaging 0.99
R1883:Eml1 UTSW 12 108,429,911 (GRCm39) missense probably damaging 0.97
R1927:Eml1 UTSW 12 108,504,476 (GRCm39) nonsense probably null
R1938:Eml1 UTSW 12 108,487,655 (GRCm39) missense possibly damaging 0.75
R2070:Eml1 UTSW 12 108,479,258 (GRCm39) missense probably damaging 1.00
R2311:Eml1 UTSW 12 108,503,675 (GRCm39) missense probably damaging 0.99
R2417:Eml1 UTSW 12 108,502,534 (GRCm39) missense probably benign 0.00
R3120:Eml1 UTSW 12 108,479,312 (GRCm39) missense probably benign 0.31
R4352:Eml1 UTSW 12 108,501,096 (GRCm39) intron probably benign
R4471:Eml1 UTSW 12 108,472,894 (GRCm39) intron probably benign
R4655:Eml1 UTSW 12 108,500,972 (GRCm39) missense probably damaging 1.00
R5077:Eml1 UTSW 12 108,472,871 (GRCm39) splice site probably benign
R5094:Eml1 UTSW 12 108,502,570 (GRCm39) missense probably benign 0.11
R5113:Eml1 UTSW 12 108,503,596 (GRCm39) missense possibly damaging 0.74
R5524:Eml1 UTSW 12 108,487,635 (GRCm39) missense probably damaging 0.99
R5775:Eml1 UTSW 12 108,472,813 (GRCm39) missense probably damaging 1.00
R6120:Eml1 UTSW 12 108,493,983 (GRCm39) missense probably damaging 1.00
R6224:Eml1 UTSW 12 108,480,767 (GRCm39) missense probably damaging 1.00
R6491:Eml1 UTSW 12 108,479,330 (GRCm39) critical splice donor site probably null
R7035:Eml1 UTSW 12 108,475,493 (GRCm39) missense probably damaging 1.00
R7134:Eml1 UTSW 12 108,472,810 (GRCm39) missense probably benign 0.00
R7273:Eml1 UTSW 12 108,504,432 (GRCm39) missense possibly damaging 0.87
R7606:Eml1 UTSW 12 108,503,625 (GRCm39) missense probably benign 0.45
R7744:Eml1 UTSW 12 108,482,863 (GRCm39) missense probably benign
R7820:Eml1 UTSW 12 108,481,433 (GRCm39) missense possibly damaging 0.81
R8013:Eml1 UTSW 12 108,487,938 (GRCm39) missense probably benign 0.18
R8223:Eml1 UTSW 12 108,502,569 (GRCm39) missense probably benign 0.00
R8258:Eml1 UTSW 12 108,476,458 (GRCm39) missense probably damaging 0.97
R8259:Eml1 UTSW 12 108,476,458 (GRCm39) missense probably damaging 0.97
R8399:Eml1 UTSW 12 108,504,390 (GRCm39) missense possibly damaging 0.91
R8427:Eml1 UTSW 12 108,496,580 (GRCm39) missense probably damaging 0.99
R9002:Eml1 UTSW 12 108,504,438 (GRCm39) missense probably damaging 1.00
R9220:Eml1 UTSW 12 108,480,702 (GRCm39) nonsense probably null
R9446:Eml1 UTSW 12 108,481,465 (GRCm39) missense probably damaging 0.98
R9500:Eml1 UTSW 12 108,493,958 (GRCm39) missense probably damaging 1.00
Z1088:Eml1 UTSW 12 108,503,718 (GRCm39) missense possibly damaging 0.80
Z1177:Eml1 UTSW 12 108,500,915 (GRCm39) missense probably damaging 1.00
Z1177:Eml1 UTSW 12 108,389,398 (GRCm39) start gained probably benign
Predicted Primers PCR Primer
(F):5'- AACTGAAGTGGGTTTCGGCAG -3'
(R):5'- AGTGTTGGGTAGCTTCAAATTCTC -3'

Sequencing Primer
(F):5'- AGTGGTCAGAGGCTAGCC -3'
(R):5'- ATCAGGCTAACAGGTGCA -3'
Posted On 2022-05-16