Incidental Mutation 'R9433:Magi3'
ID 713085
Institutional Source Beutler Lab
Gene Symbol Magi3
Ensembl Gene ENSMUSG00000052539
Gene Name membrane associated guanylate kinase, WW and PDZ domain containing 3
Synonyms 4732496O19Rik, 6530407C02Rik
MMRRC Submission
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.435) question?
Stock # R9433 (G1)
Quality Score 225.009
Status Not validated
Chromosome 3
Chromosomal Location 103920575-104127690 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to T at 103922473 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Alanine to Threonine at position 1415 (A1415T)
Ref Sequence ENSEMBL: ENSMUSP00000112934 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000064371] [ENSMUST00000121198] [ENSMUST00000122303] [ENSMUST00000145727]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000064371
SMART Domains Protein: ENSMUSP00000067932
Gene: ENSMUSG00000052539

DomainStartEndE-ValueType
low complexity region 2 14 N/A INTRINSIC
PDZ 27 108 1.94e-1 SMART
GuKc 114 281 8.56e-10 SMART
WW 297 329 9.14e-12 SMART
WW 343 375 2.47e-8 SMART
PDZ 421 497 1.48e-17 SMART
PDZ 589 659 3.07e-10 SMART
low complexity region 664 674 N/A INTRINSIC
low complexity region 683 698 N/A INTRINSIC
PDZ 737 813 1.34e-15 SMART
PDZ 861 939 7.65e-20 SMART
PDZ 1030 1104 1.55e-20 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000121198
AA Change: A1415T

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)
SMART Domains Protein: ENSMUSP00000112934
Gene: ENSMUSG00000052539
AA Change: A1415T

DomainStartEndE-ValueType
low complexity region 2 14 N/A INTRINSIC
PDZ 27 108 1.94e-1 SMART
GuKc 114 281 8.56e-10 SMART
WW 297 329 9.14e-12 SMART
WW 343 375 2.47e-8 SMART
PDZ 421 497 1.48e-17 SMART
PDZ 589 659 3.07e-10 SMART
low complexity region 664 674 N/A INTRINSIC
low complexity region 683 698 N/A INTRINSIC
PDZ 737 813 1.34e-15 SMART
PDZ 861 939 7.65e-20 SMART
PDZ 1030 1104 1.55e-20 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000122303
SMART Domains Protein: ENSMUSP00000113713
Gene: ENSMUSG00000052539

DomainStartEndE-ValueType
low complexity region 2 14 N/A INTRINSIC
PDZ 27 108 1.94e-1 SMART
GuKc 114 281 8.56e-10 SMART
WW 297 329 9.14e-12 SMART
WW 343 375 2.47e-8 SMART
PDZ 421 497 1.48e-17 SMART
PDZ 589 659 3.07e-10 SMART
low complexity region 664 674 N/A INTRINSIC
low complexity region 683 698 N/A INTRINSIC
PDZ 737 813 1.34e-15 SMART
PDZ 861 939 7.65e-20 SMART
PDZ 1030 1104 1.55e-20 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000145727
SMART Domains Protein: ENSMUSP00000114722
Gene: ENSMUSG00000058388

DomainStartEndE-ValueType
Pfam:Phtf-FEM1B_bdg 3 158 1.6e-88 PFAM
low complexity region 170 181 N/A INTRINSIC
low complexity region 347 370 N/A INTRINSIC
transmembrane domain 473 492 N/A INTRINSIC
transmembrane domain 512 534 N/A INTRINSIC
transmembrane domain 610 632 N/A INTRINSIC
transmembrane domain 647 664 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.7%
  • 20x: 99.2%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 79 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam4 T C 12: 81,466,723 (GRCm39) T633A possibly damaging Het
Adgrv1 A T 13: 81,714,471 (GRCm39) F937L probably benign Het
Adipor2 A T 6: 119,336,486 (GRCm39) F159Y probably damaging Het
Ahcyl1 A G 3: 107,575,645 (GRCm39) V380A probably damaging Het
Akp3 A G 1: 87,053,517 (GRCm39) K157E probably benign Het
Arpc1a T A 5: 145,045,203 (GRCm39) I364N possibly damaging Het
Bach1 C G 16: 87,516,603 (GRCm39) S381R probably benign Het
Brms1l G A 12: 55,912,863 (GRCm39) probably null Het
Camk1d A G 2: 5,680,777 (GRCm39) S6P unknown Het
Ccdc112 C A 18: 46,424,040 (GRCm39) V233L probably benign Het
Ccdc113 A T 8: 96,272,613 (GRCm39) N240I possibly damaging Het
Ccdc168 A T 1: 44,095,668 (GRCm39) V1810E possibly damaging Het
Ccdc6 T C 10: 70,004,951 (GRCm39) V232A possibly damaging Het
Cct5 A G 15: 31,592,883 (GRCm39) I409T possibly damaging Het
Cd96 A G 16: 45,856,298 (GRCm39) Y583H probably damaging Het
Cdh22 C T 2: 164,954,329 (GRCm39) V731M probably benign Het
Clcn1 C T 6: 42,282,494 (GRCm39) P521S probably damaging Het
Clec18a C T 8: 111,808,322 (GRCm39) A27T probably benign Het
Cnnm2 C T 19: 46,750,807 (GRCm39) A199V probably benign Het
Copg1 G A 6: 87,880,478 (GRCm39) A494T possibly damaging Het
Cpsf2 A G 12: 101,948,252 (GRCm39) E16G probably damaging Het
Cyp2j5 T A 4: 96,552,244 (GRCm39) I2F probably benign Het
Dgkg T A 16: 22,384,065 (GRCm39) N463Y probably damaging Het
Dnah11 T C 12: 117,976,007 (GRCm39) D2804G probably damaging Het
Efcab12 T C 6: 115,792,995 (GRCm39) N488D probably benign Het
Etv5 G A 16: 22,254,668 (GRCm39) P64L probably damaging Het
Fbrs A G 7: 127,084,272 (GRCm39) E468G probably benign Het
Fcho1 A T 8: 72,169,468 (GRCm39) M146K probably benign Het
Gad1 A T 2: 70,423,807 (GRCm39) M405L Het
Gcc2 T A 10: 58,106,592 (GRCm39) H609Q probably benign Het
Gm11983 A T 11: 6,786,902 (GRCm39) M75K unknown Het
Gm4353 T A 7: 115,682,871 (GRCm39) I237F probably damaging Het
H1f0 C T 15: 78,912,947 (GRCm39) P9L probably damaging Het
Hcn4 A G 9: 58,731,222 (GRCm39) D143G unknown Het
Id1 T A 2: 152,578,430 (GRCm39) V57D probably damaging Het
Ifna13 T C 4: 88,562,540 (GRCm39) Q28R probably benign Het
Itpr3 G A 17: 27,337,651 (GRCm39) probably benign Het
Lonrf2 G A 1: 38,875,538 (GRCm39) probably benign Het
Mia2 A G 12: 59,148,371 (GRCm39) E77G probably damaging Het
Muc16 T A 9: 18,483,937 (GRCm39) Q6945L probably benign Het
Nos2 G A 11: 78,850,490 (GRCm39) R1116H probably damaging Het
Or2w4 C T 13: 21,795,224 (GRCm39) C305Y probably benign Het
Parpbp A C 10: 87,975,858 (GRCm39) V85G probably benign Het
Pcmtd2 C T 2: 181,496,837 (GRCm39) H273Y possibly damaging Het
Pcp4l1 C T 1: 171,001,998 (GRCm39) G54D probably damaging Het
Pkdrej T C 15: 85,704,070 (GRCm39) H622R probably benign Het
Plxnd1 G T 6: 115,945,754 (GRCm39) D906E probably benign Het
Pnpla8 T C 12: 44,330,305 (GRCm39) S286P probably damaging Het
Prss36 C T 7: 127,533,339 (GRCm39) V631I probably benign Het
Ptpn9 A T 9: 56,964,010 (GRCm39) N381I possibly damaging Het
Ranbp9 A T 13: 43,576,041 (GRCm39) I222N probably damaging Het
Rev1 T C 1: 38,092,173 (GRCm39) T1249A probably damaging Het
Ripply2 G T 9: 86,901,715 (GRCm39) W80C probably damaging Het
Rnaseh2b C A 14: 62,602,722 (GRCm39) P235Q probably benign Het
Sacs T A 14: 61,443,997 (GRCm39) F2014L probably damaging Het
Serpinb9f A G 13: 33,518,238 (GRCm39) N246S probably benign Het
Sh3pxd2a A T 19: 47,255,539 (GRCm39) S1088T probably damaging Het
Shank1 G A 7: 43,962,342 (GRCm39) S71N unknown Het
Skint3 A G 4: 112,137,432 (GRCm39) I367V probably benign Het
Slc20a2 G T 8: 23,051,211 (GRCm39) E415* probably null Het
Slc5a1 T A 5: 33,310,025 (GRCm39) S418T probably benign Het
Spats2 G T 15: 99,076,446 (GRCm39) G175* probably null Het
Srebf1 A T 11: 60,095,015 (GRCm39) F485L possibly damaging Het
St8sia4 A G 1: 95,555,364 (GRCm39) V222A Het
Stab1 C T 14: 30,865,531 (GRCm39) E1786K probably benign Het
Stat2 A G 10: 128,112,657 (GRCm39) M58V probably benign Het
Stat5a A G 11: 100,765,870 (GRCm39) T319A probably benign Het
Sufu A G 19: 46,385,532 (GRCm39) probably benign Het
Tle6 T A 10: 81,426,880 (GRCm39) I579F probably damaging Het
Tmem131l A T 3: 83,845,459 (GRCm39) D390E probably benign Het
Trim33 T A 3: 103,228,979 (GRCm39) probably null Het
Usp54 A G 14: 20,611,678 (GRCm39) V1046A probably benign Het
Vit G A 17: 78,932,413 (GRCm39) G507R probably damaging Het
Vmn2r59 A G 7: 41,695,590 (GRCm39) I274T probably damaging Het
Vmn2r67 T A 7: 84,804,917 (GRCm39) K65M possibly damaging Het
Vmn2r86 C T 10: 130,282,567 (GRCm39) G683E possibly damaging Het
Vwa8 T C 14: 79,335,871 (GRCm39) probably null Het
Zdhhc14 A G 17: 5,781,779 (GRCm39) D333G probably benign Het
Zup1 G A 10: 33,795,355 (GRCm39) S568L probably damaging Het
Other mutations in Magi3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00429:Magi3 APN 3 103,922,294 (GRCm39) missense probably damaging 1.00
IGL00933:Magi3 APN 3 103,923,163 (GRCm39) missense probably benign
IGL01151:Magi3 APN 3 103,958,690 (GRCm39) missense probably damaging 1.00
IGL01674:Magi3 APN 3 104,013,037 (GRCm39) splice site probably benign
IGL01790:Magi3 APN 3 103,992,560 (GRCm39) missense probably damaging 1.00
IGL01903:Magi3 APN 3 103,958,526 (GRCm39) missense possibly damaging 0.87
IGL01939:Magi3 APN 3 103,961,778 (GRCm39) missense probably damaging 0.99
IGL02142:Magi3 APN 3 103,923,219 (GRCm39) missense probably benign 0.32
IGL02183:Magi3 APN 3 103,992,663 (GRCm39) missense probably benign 0.01
IGL02887:Magi3 APN 3 104,002,473 (GRCm39) missense probably damaging 1.00
IGL03071:Magi3 APN 3 103,923,202 (GRCm39) missense possibly damaging 0.51
IGL03085:Magi3 APN 3 103,922,655 (GRCm39) missense possibly damaging 0.88
IGL03192:Magi3 APN 3 103,950,562 (GRCm39) missense probably damaging 1.00
IGL03204:Magi3 APN 3 104,013,151 (GRCm39) missense probably damaging 1.00
IGL03227:Magi3 APN 3 103,958,435 (GRCm39) missense probably benign
IGL03388:Magi3 APN 3 103,923,157 (GRCm39) missense probably benign 0.30
PIT4280001:Magi3 UTSW 3 103,961,668 (GRCm39) missense probably damaging 1.00
PIT4504001:Magi3 UTSW 3 103,922,842 (GRCm39) missense probably benign 0.05
R0092:Magi3 UTSW 3 103,958,280 (GRCm39) nonsense probably null
R0514:Magi3 UTSW 3 103,922,338 (GRCm39) missense probably damaging 1.00
R0569:Magi3 UTSW 3 103,923,358 (GRCm39) missense probably benign 0.43
R0608:Magi3 UTSW 3 103,924,873 (GRCm39) missense probably damaging 1.00
R0920:Magi3 UTSW 3 103,941,507 (GRCm39) splice site probably null
R1173:Magi3 UTSW 3 103,968,946 (GRCm39) critical splice donor site probably null
R1256:Magi3 UTSW 3 103,935,126 (GRCm39) missense probably benign 0.08
R1391:Magi3 UTSW 3 103,922,374 (GRCm39) nonsense probably null
R1559:Magi3 UTSW 3 103,954,169 (GRCm39) splice site probably benign
R1568:Magi3 UTSW 3 103,996,843 (GRCm39) missense probably benign 0.02
R1631:Magi3 UTSW 3 103,958,493 (GRCm39) missense probably benign 0.05
R1747:Magi3 UTSW 3 103,941,489 (GRCm39) missense possibly damaging 0.82
R1930:Magi3 UTSW 3 103,996,920 (GRCm39) missense probably damaging 1.00
R1964:Magi3 UTSW 3 103,927,718 (GRCm39) missense probably damaging 0.99
R2151:Magi3 UTSW 3 103,992,554 (GRCm39) missense probably damaging 1.00
R2151:Magi3 UTSW 3 103,954,198 (GRCm39) missense probably damaging 1.00
R2266:Magi3 UTSW 3 103,928,382 (GRCm39) intron probably benign
R2267:Magi3 UTSW 3 103,928,382 (GRCm39) intron probably benign
R2268:Magi3 UTSW 3 103,928,382 (GRCm39) intron probably benign
R2519:Magi3 UTSW 3 103,923,081 (GRCm39) missense probably benign 0.00
R3104:Magi3 UTSW 3 103,958,636 (GRCm39) missense probably damaging 0.99
R3105:Magi3 UTSW 3 103,958,636 (GRCm39) missense probably damaging 0.99
R3619:Magi3 UTSW 3 103,961,721 (GRCm39) missense probably damaging 1.00
R4158:Magi3 UTSW 3 103,958,277 (GRCm39) missense probably damaging 1.00
R4160:Magi3 UTSW 3 103,958,277 (GRCm39) missense probably damaging 1.00
R4284:Magi3 UTSW 3 103,923,184 (GRCm39) nonsense probably null
R4285:Magi3 UTSW 3 103,923,184 (GRCm39) nonsense probably null
R4397:Magi3 UTSW 3 104,127,030 (GRCm39) missense probably damaging 1.00
R4512:Magi3 UTSW 3 103,996,871 (GRCm39) missense probably damaging 0.99
R4676:Magi3 UTSW 3 103,923,141 (GRCm39) missense probably benign
R4758:Magi3 UTSW 3 103,922,637 (GRCm39) missense probably benign 0.01
R4940:Magi3 UTSW 3 103,958,708 (GRCm39) missense probably damaging 1.00
R5039:Magi3 UTSW 3 104,013,107 (GRCm39) missense probably damaging 1.00
R5160:Magi3 UTSW 3 103,935,224 (GRCm39) missense possibly damaging 0.46
R5422:Magi3 UTSW 3 103,958,684 (GRCm39) missense probably damaging 1.00
R5509:Magi3 UTSW 3 103,922,818 (GRCm39) missense probably benign 0.00
R5839:Magi3 UTSW 3 104,127,047 (GRCm39) missense probably damaging 1.00
R5924:Magi3 UTSW 3 103,961,854 (GRCm39) splice site probably null
R6018:Magi3 UTSW 3 104,013,128 (GRCm39) missense probably damaging 1.00
R6189:Magi3 UTSW 3 103,958,181 (GRCm39) missense probably damaging 1.00
R6235:Magi3 UTSW 3 103,923,384 (GRCm39) missense probably damaging 0.99
R6244:Magi3 UTSW 3 103,923,013 (GRCm39) missense probably benign 0.16
R6258:Magi3 UTSW 3 103,996,912 (GRCm39) missense probably damaging 1.00
R6358:Magi3 UTSW 3 103,958,268 (GRCm39) missense probably damaging 1.00
R6534:Magi3 UTSW 3 103,992,536 (GRCm39) missense possibly damaging 0.75
R6806:Magi3 UTSW 3 103,954,285 (GRCm39) missense possibly damaging 0.94
R6816:Magi3 UTSW 3 103,997,227 (GRCm39) splice site probably null
R6897:Magi3 UTSW 3 103,996,873 (GRCm39) missense probably damaging 1.00
R7011:Magi3 UTSW 3 104,013,070 (GRCm39) missense probably damaging 1.00
R7039:Magi3 UTSW 3 103,958,699 (GRCm39) missense probably damaging 1.00
R7196:Magi3 UTSW 3 103,956,484 (GRCm39) missense probably benign 0.01
R7237:Magi3 UTSW 3 103,935,227 (GRCm39) missense probably damaging 1.00
R7285:Magi3 UTSW 3 103,941,430 (GRCm39) missense probably benign 0.00
R7709:Magi3 UTSW 3 103,941,354 (GRCm39) missense probably damaging 1.00
R7724:Magi3 UTSW 3 103,923,243 (GRCm39) missense probably benign 0.04
R7797:Magi3 UTSW 3 103,958,618 (GRCm39) missense probably damaging 1.00
R7950:Magi3 UTSW 3 103,924,005 (GRCm39) missense probably damaging 1.00
R8140:Magi3 UTSW 3 103,941,402 (GRCm39) missense probably damaging 1.00
R8204:Magi3 UTSW 3 103,958,502 (GRCm39) missense probably benign
R8229:Magi3 UTSW 3 103,923,018 (GRCm39) missense probably benign 0.00
R8229:Magi3 UTSW 3 103,923,017 (GRCm39) missense possibly damaging 0.79
R8260:Magi3 UTSW 3 103,922,625 (GRCm39) missense probably benign 0.01
R8348:Magi3 UTSW 3 103,958,531 (GRCm39) missense probably damaging 1.00
R8368:Magi3 UTSW 3 104,002,379 (GRCm39) critical splice donor site probably null
R8543:Magi3 UTSW 3 104,126,984 (GRCm39) missense probably damaging 0.98
R8762:Magi3 UTSW 3 103,958,169 (GRCm39) missense probably damaging 1.00
R8826:Magi3 UTSW 3 103,992,662 (GRCm39) missense probably benign 0.00
R8847:Magi3 UTSW 3 103,922,334 (GRCm39) missense probably benign 0.09
R8892:Magi3 UTSW 3 103,958,141 (GRCm39) missense probably damaging 1.00
R8939:Magi3 UTSW 3 103,996,748 (GRCm39) intron probably benign
R9090:Magi3 UTSW 3 103,923,264 (GRCm39) missense possibly damaging 0.68
R9187:Magi3 UTSW 3 103,923,073 (GRCm39) missense possibly damaging 0.76
R9271:Magi3 UTSW 3 103,923,264 (GRCm39) missense possibly damaging 0.68
R9439:Magi3 UTSW 3 103,922,473 (GRCm39) missense probably benign 0.01
R9557:Magi3 UTSW 3 103,924,933 (GRCm39) missense probably damaging 1.00
R9557:Magi3 UTSW 3 103,922,473 (GRCm39) missense probably benign 0.01
R9697:Magi3 UTSW 3 103,956,458 (GRCm39) critical splice donor site probably null
R9796:Magi3 UTSW 3 103,928,291 (GRCm39) missense probably benign
X0026:Magi3 UTSW 3 103,927,736 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- TTTGTCAGCCATGCCAGTAG -3'
(R):5'- TCTGAAGCAGAGTCAGCCAG -3'

Sequencing Primer
(F):5'- ATGCCAGTAGTGCCTGTGAC -3'
(R):5'- CCAAGTCTCCAGAGAAAAAGAGCAG -3'
Posted On 2022-05-16