Incidental Mutation 'R9437:Or56a41'
ID 713324
Institutional Source Beutler Lab
Gene Symbol Or56a41
Ensembl Gene ENSMUSG00000041885
Gene Name olfactory receptor family 56 subfamily A member 41, pseudogene 1
Synonyms MOR40-10P, GA_x6K02T2PBJ9-7720330-7719479, Olfr680
MMRRC Submission
Accession Numbers
Essential gene? Probably non essential (E-score: 0.081) question?
Stock # R9437 (G1)
Quality Score 225.009
Status Not validated
Chromosome 7
Chromosomal Location 104739909-104740601 bp(-) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) A to T at 104739963 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Stop codon at position 294 (Y294*)
Ref Sequence ENSEMBL: ENSMUSP00000154703 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000042676] [ENSMUST00000098158] [ENSMUST00000214328] [ENSMUST00000215704]
AlphaFold A0A2I3BS13
Predicted Effect probably null
Transcript: ENSMUST00000042676
AA Change: Y294*
Predicted Effect probably benign
Transcript: ENSMUST00000098158
SMART Domains Protein: ENSMUSP00000095761
Gene: ENSMUSG00000096029

DomainStartEndE-ValueType
Pfam:7tm_4 35 314 1.2e-73 PFAM
Pfam:7TM_GPCR_Srsx 39 311 6.2e-10 PFAM
Pfam:7tm_1 45 296 1.8e-14 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000214328
Predicted Effect probably benign
Transcript: ENSMUST00000215704
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.7%
  • 20x: 99.0%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 36 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Akap8l T C 17: 32,553,608 (GRCm39) S371G probably benign Het
Bdp1 A G 13: 100,162,158 (GRCm39) S2255P probably benign Het
Ccdc93 C T 1: 121,369,584 (GRCm39) Q109* probably null Het
Copa G A 1: 171,931,712 (GRCm39) R321H possibly damaging Het
Cyp2b23 A T 7: 26,372,199 (GRCm39) D415E possibly damaging Het
Dcun1d2 T C 8: 13,331,004 (GRCm39) D42G probably benign Het
Ebf4 T A 2: 130,202,005 (GRCm39) S325T probably benign Het
Ergic2 T C 6: 148,097,562 (GRCm39) E137G probably benign Het
Etl4 T C 2: 20,813,872 (GRCm39) S1304P probably benign Het
Fam24b A T 7: 130,927,893 (GRCm39) C99S probably benign Het
Fat4 A G 3: 38,945,417 (GRCm39) T1437A probably benign Het
Fgd5 A G 6: 91,964,627 (GRCm39) T287A probably benign Het
Fscb G T 12: 64,519,708 (GRCm39) A586E unknown Het
Gm2244 A T 14: 19,599,038 (GRCm39) I86N probably damaging Het
Hnrnph3 T A 10: 62,854,627 (GRCm39) R55* probably null Het
Kcnk5 A C 14: 20,192,468 (GRCm39) I231S probably damaging Het
Krt10 A G 11: 99,276,390 (GRCm39) M87T probably benign Het
Ly6c2 C G 15: 74,983,535 (GRCm39) probably benign Het
Map4 C A 9: 109,864,155 (GRCm39) T460K possibly damaging Het
Mok A G 12: 110,774,659 (GRCm39) C388R probably benign Het
Ms4a3 T C 19: 11,607,065 (GRCm39) D200G possibly damaging Het
Ncapd2 A G 6: 125,153,655 (GRCm39) Y687H probably damaging Het
Nrp1 A G 8: 129,187,108 (GRCm39) T385A probably benign Het
Or2w25 T C 11: 59,504,195 (GRCm39) M135T possibly damaging Het
Osbp2 A G 11: 3,664,581 (GRCm39) S131P probably damaging Het
Pcdhga3 G A 18: 37,808,144 (GRCm39) R199H probably damaging Het
Peg10 T TCCA 6: 4,756,451 (GRCm39) probably benign Het
Pigx G T 16: 31,918,310 (GRCm39) D26E probably benign Het
Pkn3 T C 2: 29,973,267 (GRCm39) I363T possibly damaging Het
Psg16 T A 7: 16,827,715 (GRCm39) Y133N probably damaging Het
Pygl A G 12: 70,246,925 (GRCm39) I407T probably damaging Het
Rc3h2 G A 2: 37,272,841 (GRCm39) A745V possibly damaging Het
Srgap1 T C 10: 121,636,777 (GRCm39) E703G probably benign Het
Susd4 T C 1: 182,681,697 (GRCm39) probably null Het
Tbpl1 T C 10: 22,587,838 (GRCm39) N37S probably damaging Het
Tex264 T C 9: 106,559,096 (GRCm39) I77V possibly damaging Het
Other mutations in Or56a41
AlleleSourceChrCoordTypePredicted EffectPPH Score
R6961:Or56a41 UTSW 7 104,741,978 (GRCm39) missense probably benign 0.31
R6969:Or56a41 UTSW 7 104,740,463 (GRCm39) missense probably benign 0.00
R7139:Or56a41 UTSW 7 104,742,005 (GRCm39) missense probably benign 0.20
R7169:Or56a41 UTSW 7 104,740,397 (GRCm39) missense possibly damaging 0.71
R7316:Or56a41 UTSW 7 104,740,107 (GRCm39) missense probably damaging 0.97
R7537:Or56a41 UTSW 7 104,741,978 (GRCm39) missense probably benign 0.31
R7970:Or56a41 UTSW 7 104,740,556 (GRCm39) missense probably benign 0.00
R8045:Or56a41 UTSW 7 104,740,190 (GRCm39) missense probably benign 0.17
R8444:Or56a41 UTSW 7 104,740,165 (GRCm39) missense probably damaging 0.96
R8712:Or56a41 UTSW 7 104,741,808 (GRCm39) missense possibly damaging 0.79
R8922:Or56a41 UTSW 7 104,740,469 (GRCm39) missense probably benign 0.03
R9038:Or56a41 UTSW 7 104,740,433 (GRCm39) missense probably benign 0.00
R9643:Or56a41 UTSW 7 104,740,445 (GRCm39) missense probably benign
Z1177:Or56a41 UTSW 7 104,740,145 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GGCTGCATTATTGACACATCATGATC -3'
(R):5'- CCAAGGCCTTGAGTACTTGTGG -3'

Sequencing Primer
(F):5'- TCAAGATGAATGTAGCAACATGC -3'
(R):5'- GAGTACTTGTGGTTCACATCTCATC -3'
Posted On 2022-05-16