Mutagenetix > Incidental Mutation

Incidental Mutation 'R9462:Lilra6'

714932

Institutional Source

Beutler Lab

Gene Symbol

Lilra6

Ensembl Gene

ENSMUSG00000030427

Gene Name

leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6

Synonyms

7M1, Pira3

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.093) question?

Stock #

R9462 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

3911279-3918502 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 3914994 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tryptophan to Arginine at position 505 (W505R)

Ref Sequence

ENSEMBL: ENSMUSP00000042636 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000038176] [ENSMUST00000090689] [ENSMUST00000206077]

AlphaFold

A0A0B4J1F3

Predicted Effect

probably damaging
Transcript: ENSMUST00000038176
AA Change: W505R

PolyPhen 2 Score 0.970 (Sensitivity: 0.77; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000042636
Gene: ENSMUSG00000030427
AA Change: W505R

Domain	Start	End	E-Value	Type
low complexity region	8	17	N/A	INTRINSIC
IG_like	40	105	3.11e0	SMART
IG	129	315	4.53e-2	SMART
IG_like	237	302	1.54e-1	SMART
IG_like	328	415	1.79e1	SMART
IG_like	429	517	2.66e1	SMART
IG	529	618	8.59e-3	SMART
low complexity region	637	646	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000090689
AA Change: W467R

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000088188
Gene: ENSMUSG00000030427
AA Change: W467R

Domain	Start	End	E-Value	Type
low complexity region	8	17	N/A	INTRINSIC
IG_like	34	118	7.25e0	SMART
IG_like	129	220	1.62e2	SMART
IG_like	290	377	1.79e1	SMART
IG_like	391	479	2.66e1	SMART
IG	491	580	8.59e-3	SMART
low complexity region	599	608	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000206077

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921539E11Rik	G	A	4: 103,092,964 (GRCm39)	T220I	probably benign	Het
Abca8b	T	A	11: 109,844,433 (GRCm39)	H928L		Het
Ahnak	A	T	19: 8,981,299 (GRCm39)	D861V	probably damaging	Het
Ahnak2	C	A	12: 112,750,655 (GRCm39)	R89L		Het
Aipl1	C	T	11: 71,928,253 (GRCm39)	G11D	probably damaging	Het
Anks6	A	G	4: 47,033,142 (GRCm39)	L573P	unknown	Het
Ano5	T	C	7: 51,235,200 (GRCm39)	V711A	probably benign	Het
Arl2bp	C	A	8: 95,398,755 (GRCm39)	A120D	probably damaging	Het
Asap1	A	G	15: 64,038,328 (GRCm39)	Y223H	probably damaging	Het
Atp7b	A	T	8: 22,490,160 (GRCm39)	M1151K	probably damaging	Het
B4galnt3	A	T	6: 120,271,438 (GRCm39)	L28Q	probably null	Het
Ccdc39	T	C	3: 33,868,519 (GRCm39)	K856E	probably benign	Het
Ccr9	A	G	9: 123,608,600 (GRCm39)	D94G	probably damaging	Het
Cdan1	A	G	2: 120,560,060 (GRCm39)	I368T	possibly damaging	Het
Cdhr17	G	T	5: 17,027,213 (GRCm39)	A379S		Het
Cfap54	T	C	10: 92,737,920 (GRCm39)	Q2326R	unknown	Het
Chrm3	T	C	13: 9,927,437 (GRCm39)	Y533C		Het
Ckap4	C	T	10: 84,363,924 (GRCm39)	E380K	possibly damaging	Het
Cntnap2	T	C	6: 46,211,217 (GRCm39)	F544L	probably damaging	Het
Cwh43	A	G	5: 73,591,695 (GRCm39)	K596R	probably benign	Het
Cyp26c1	A	G	19: 37,681,634 (GRCm39)	E479G	probably damaging	Het
Deup1	A	G	9: 15,493,882 (GRCm39)	V420A	probably benign	Het
Dnah3	A	G	7: 119,551,523 (GRCm39)	V2932A	probably benign	Het
Dthd1	G	A	5: 63,039,626 (GRCm39)	R676H	probably benign	Het
Eef1e1	A	G	13: 38,838,997 (GRCm39)	L120P	probably damaging	Het
Elane	T	C	10: 79,723,883 (GRCm39)	S244P	probably benign	Het
Esp6	A	G	17: 40,876,315 (GRCm39)	E121G	probably benign	Het
Eya1	T	C	1: 14,299,775 (GRCm39)	E326G	probably damaging	Het
Fut2	G	T	7: 45,300,492 (GRCm39)	N93K	probably damaging	Het
Garin5b	A	G	7: 4,761,330 (GRCm39)	S461P		Het
Gm12695	A	G	4: 96,651,075 (GRCm39)	V126A	probably benign	Het
Gucy2g	A	G	19: 55,221,469 (GRCm39)		probably null	Het
Hbs1l	T	C	10: 21,218,304 (GRCm39)	V267A	probably damaging	Het
Hsd17b1	A	T	11: 100,969,806 (GRCm39)	N106I	possibly damaging	Het
Ino80d	G	A	1: 63,097,393 (GRCm39)	L939F	probably damaging	Het
Map3k14	T	A	11: 103,118,360 (GRCm39)	K609*	probably null	Het
Mark1	T	A	1: 184,651,868 (GRCm39)	K212N	probably damaging	Het
Muc5b	T	A	7: 141,415,216 (GRCm39)	C2721S		Het
Myh4	A	G	11: 67,141,811 (GRCm39)	D890G	possibly damaging	Het
Mylk2	T	G	2: 152,761,373 (GRCm39)	L492R	probably damaging	Het
Myt1	T	A	2: 181,467,729 (GRCm39)	Y1134*	probably null	Het
N4bp2	G	A	5: 65,947,898 (GRCm39)	G176D	probably benign	Het
Ncstn	A	C	1: 171,899,707 (GRCm39)	M325R	probably damaging	Het
Ndor1	C	T	2: 25,144,875 (GRCm39)		probably null	Het
Notch4	G	A	17: 34,806,667 (GRCm39)	R1868H	probably benign	Het
Ogfr	AGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCAAAAGGCCAGGTGGAGCCAGAGGACCCAAAAGGCCAGGTGGGGCCAGAAGACCCAAAAGGCCAGGTGGGGCCAGAGGACCCAAAAGGCCAGGTGGGGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCCAAAGCCAGGTGGGGCCAGAG	AGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCAAAAGGCCAGGTGGAGCCAGAGGACCCAAAAGGCCAGGTGGGGCCAGAAGACCCAAAAGGCCAGGTGGGGCCAGAGGACCCAAAAGGCCAGGTGGGGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCCAAAGCCAGGTGGGGCCAGAG	2: 180,236,850 (GRCm39)		probably benign	Het
Or2b2b	A	T	13: 21,859,015 (GRCm39)	V33E	probably benign	Het
Or8s16	T	A	15: 98,211,186 (GRCm39)	N82Y	possibly damaging	Het
Oxct2a	G	T	4: 123,216,441 (GRCm39)	D313E	probably damaging	Het
Pcdha2	T	A	18: 37,073,546 (GRCm39)	H392Q	probably benign	Het
Pcdhb20	T	G	18: 37,639,799 (GRCm39)	L775R	probably benign	Het
Pclo	A	G	5: 14,840,408 (GRCm39)	D1449G		Het
Pcx	A	G	19: 4,651,970 (GRCm39)	T73A	probably benign	Het
Pou6f2	A	G	13: 18,314,189 (GRCm39)	S395P	probably benign	Het
Prss35	C	G	9: 86,638,392 (GRCm39)	I387M		Het
Radil	C	A	5: 142,471,220 (GRCm39)	D1019Y	probably damaging	Het
Rnf40	G	T	7: 127,191,010 (GRCm39)		probably null	Het
Scarb1	A	T	5: 125,417,891 (GRCm39)	L19Q	probably damaging	Het
Scn8a	T	A	15: 100,930,159 (GRCm39)	F1457I		Het
Sdk2	C	T	11: 113,760,744 (GRCm39)	V339I	possibly damaging	Het
Siglec1	A	G	2: 130,916,404 (GRCm39)	L1182P	probably damaging	Het
Slc4a4	G	A	5: 89,194,131 (GRCm39)	V204I	probably damaging	Het
Sp9	T	C	2: 73,104,243 (GRCm39)	S266P	probably benign	Het
Spata21	A	G	4: 140,831,316 (GRCm39)	E421G	probably damaging	Het
Sulf1	C	T	1: 12,929,459 (GRCm39)	P242L	probably damaging	Het
Sval3	G	A	6: 41,945,105 (GRCm39)	G11E	possibly damaging	Het
Tecta	T	A	9: 42,248,576 (GRCm39)	Y1942F	probably damaging	Het
Thbs2	C	T	17: 14,890,243 (GRCm39)	G1121D	probably damaging	Het
Thrap3	G	T	4: 126,070,048 (GRCm39)	S613*	probably null	Het
Ttc34	A	C	4: 154,942,539 (GRCm39)	K59Q	probably damaging	Het
Tut7	A	T	13: 59,929,957 (GRCm39)	L1428H	possibly damaging	Het
Ube4b	A	T	4: 149,444,748 (GRCm39)	L504Q	probably damaging	Het
Uncx	A	T	5: 139,529,771 (GRCm39)	E8V	probably damaging	Het
Vmn1r79	A	T	7: 11,910,261 (GRCm39)	I48F	probably damaging	Het
Vmn2r99	C	A	17: 19,598,388 (GRCm39)	Y137*	probably null	Het
Zfp354b	G	A	11: 50,814,523 (GRCm39)	T134I	probably benign	Het
Zfp618	G	A	4: 63,051,510 (GRCm39)	V764I	possibly damaging	Het
Zfp873	T	G	10: 81,897,131 (GRCm39)	C621G	probably benign	Het

Other mutations in Lilra6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00508:Lilra6	APN	7	3,914,553 (GRCm39)	missense	probably benign	0.04
IGL00569:Lilra6	APN	7	3,917,588 (GRCm39)	missense	probably damaging	0.99
IGL00899:Lilra6	APN	7	3,916,056 (GRCm39)	missense	probably damaging	1.00
IGL00955:Lilra6	APN	7	3,914,403 (GRCm39)	splice site	probably benign
IGL01585:Lilra6	APN	7	3,917,498 (GRCm39)	missense	probably benign	0.01
IGL02195:Lilra6	APN	7	3,917,549 (GRCm39)	missense	probably benign	0.00
IGL02586:Lilra6	APN	7	3,911,819 (GRCm39)	missense	probably benign	0.36
IGL02719:Lilra6	APN	7	3,915,991 (GRCm39)	missense	possibly damaging	0.96
IGL03166:Lilra6	APN	7	3,915,626 (GRCm39)	missense	possibly damaging	0.69
IGL03329:Lilra6	APN	7	3,917,647 (GRCm39)	splice site	probably benign
R0233:Lilra6	UTSW	7	3,917,935 (GRCm39)	missense	possibly damaging	0.69
R0233:Lilra6	UTSW	7	3,917,935 (GRCm39)	missense	possibly damaging	0.69
R0423:Lilra6	UTSW	7	3,917,774 (GRCm39)	splice site	probably benign
R0483:Lilra6	UTSW	7	3,916,138 (GRCm39)	missense	probably benign	0.02
R0511:Lilra6	UTSW	7	3,915,784 (GRCm39)	missense	possibly damaging	0.77
R1472:Lilra6	UTSW	7	3,915,718 (GRCm39)	missense	probably damaging	1.00
R1560:Lilra6	UTSW	7	3,914,407 (GRCm39)	critical splice donor site	probably null
R1584:Lilra6	UTSW	7	3,915,661 (GRCm39)	missense	probably damaging	1.00
R1781:Lilra6	UTSW	7	3,918,066 (GRCm39)	missense	probably benign	0.28
R2411:Lilra6	UTSW	7	3,914,453 (GRCm39)	missense	probably damaging	1.00
R2420:Lilra6	UTSW	7	3,917,857 (GRCm39)	missense	probably damaging	1.00
R4021:Lilra6	UTSW	7	3,914,417 (GRCm39)	missense	probably benign	0.20
R4074:Lilra6	UTSW	7	3,917,889 (GRCm39)	missense	probably benign	0.23
R4284:Lilra6	UTSW	7	3,911,803 (GRCm39)	missense	possibly damaging	0.76
R4508:Lilra6	UTSW	7	3,915,028 (GRCm39)	nonsense	probably null
R4894:Lilra6	UTSW	7	3,915,530 (GRCm39)	missense	probably benign	0.01
R4977:Lilra6	UTSW	7	3,917,382 (GRCm39)	missense	probably benign	0.01
R5048:Lilra6	UTSW	7	3,918,440 (GRCm39)	critical splice donor site	probably null
R5164:Lilra6	UTSW	7	3,917,880 (GRCm39)	missense	probably damaging	1.00
R5185:Lilra6	UTSW	7	3,917,635 (GRCm39)	missense	probably benign	0.00
R5527:Lilra6	UTSW	7	3,917,586 (GRCm39)	start gained	probably benign
R6281:Lilra6	UTSW	7	3,914,972 (GRCm39)	missense	probably damaging	1.00
R6480:Lilra6	UTSW	7	3,915,932 (GRCm39)	missense	probably damaging	1.00
R6512:Lilra6	UTSW	7	3,917,387 (GRCm39)	missense	probably benign	0.06
R6565:Lilra6	UTSW	7	3,918,019 (GRCm39)	missense	probably benign
R7017:Lilra6	UTSW	7	3,911,707 (GRCm39)	missense	possibly damaging	0.93
R7095:Lilra6	UTSW	7	3,916,196 (GRCm39)	missense	probably damaging	1.00
R7747:Lilra6	UTSW	7	3,915,995 (GRCm39)	missense	probably benign	0.16
R8056:Lilra6	UTSW	7	3,915,551 (GRCm39)	missense	probably damaging	1.00
R8280:Lilra6	UTSW	7	3,916,046 (GRCm39)	missense	probably benign	0.01
R9197:Lilra6	UTSW	7	3,915,716 (GRCm39)	missense	possibly damaging	0.94
R9354:Lilra6	UTSW	7	3,914,628 (GRCm39)	missense	probably damaging	1.00
R9379:Lilra6	UTSW	7	3,916,166 (GRCm39)	missense	probably damaging	1.00
R9406:Lilra6	UTSW	7	3,917,853 (GRCm39)	missense	probably benign
R9649:Lilra6	UTSW	7	3,917,521 (GRCm39)	missense	possibly damaging	0.47
Z1176:Lilra6	UTSW	7	3,918,073 (GRCm39)	critical splice acceptor site	probably null
Z1177:Lilra6	UTSW	7	3,915,580 (GRCm39)	missense	possibly damaging	0.48

Predicted Primers

PCR Primer
(F):5'- GACTGAGCTCAACTCCTGTTC -3'
(R):5'- TATCCTGGACCCTGGAATGACC -3'

Sequencing Primer
(F):5'- ACTGAGCTCAACTCCTGTTCTTGTC -3'
(R):5'- GCAGTGTTACTCTGACATCAAC -3'

Posted On

2022-06-15