Mutagenetix > Incidental Mutation

Incidental Mutation 'R9474:Galntl6'

715645

Institutional Source

Beutler Lab

Gene Symbol

Galntl6

Ensembl Gene

ENSMUSG00000096914

Gene Name

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6

Synonyms

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.082) question?

Stock #

R9474 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

57774052-58912640 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 57777325 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Serine to Arginine at position 20 (S20R)

Ref Sequence

ENSEMBL: ENSMUSP00000145016 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000204067] [ENSMUST00000204128]

AlphaFold

E5D8G1

Predicted Effect

SMART Domains

Protein: ENSMUSP00000096353
Gene: ENSMUSG00000096914
AA Change: S370R

Domain	Start	End	E-Value	Type
Pfam:Glycos_transf_2	1	144	1.6e-18	PFAM
Pfam:Glyco_transf_7C	113	187	3.6e-12	PFAM
RICIN	268	401	7.9e-21	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000204067
AA Change: S20R

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000145016
Gene: ENSMUSG00000096914
AA Change: S20R

Domain	Start	End	E-Value	Type
Pfam:Ricin_B_lectin	1	47	6.2e-9	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000204128
AA Change: S555R

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000145321
Gene: ENSMUSG00000096914
AA Change: S555R

Domain	Start	End	E-Value	Type
transmembrane domain	13	31	N/A	INTRINSIC
Pfam:Glyco_tranf_2_3	140	404	2.1e-9	PFAM
Pfam:Glycos_transf_2	143	328	7.3e-33	PFAM
Pfam:Glyco_tranf_2_2	143	356	1.2e-8	PFAM
Pfam:Glyco_transf_7C	297	371	6.2e-12	PFAM
RICIN	452	585	7.9e-21	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.6%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2610008E11Rik	C	A	10: 79,067,731	K250N	probably damaging	Het
9530077C05Rik	T	C	9: 22,431,719	M303T	probably damaging	Het
Adam5	A	T	8: 24,747,524	D623E	possibly damaging	Het
Akt3	T	C	1: 177,025,386	Y473C	probably damaging	Het
Ankib1	A	G	5: 3,755,617	Y217H	probably damaging	Het
Clca4b	T	A	3: 144,911,166	T908S	probably benign	Het
Clec7a	G	A	6: 129,463,163	Q160*	probably null	Het
Cntnap4	T	A	8: 112,733,471	I152N	probably damaging	Het
Ctdspl	C	T	9: 119,037,377	A179V	probably damaging	Het
Ddx43	T	C	9: 78,406,386	S200P	probably damaging	Het
Dip2c	A	G	13: 9,494,927	D84G	unknown	Het
Dmbt1	G	A	7: 131,074,257	R625H	unknown	Het
Dusp9	TAAAGCGGAGGCCAAAGCGGAGGCCAAAGCGGAGGCTAAAGCGGAGGCCAAAGCGGAGGCCAAAGCGGAGGCCAAAGCGGAGGCTAAAGCGGAGGCCAAAGCGGAGGCCAAAG	TAAAGCGGAGGCCAAAGCGGAGGCCAAAGCGGAGGCTAAAGCGGAGGCCAAAGCGGAGGCCAAAG	X: 73,640,611		probably benign	Het
E2f7	C	T	10: 110,767,189	T355I	probably damaging	Het
E2f7	C	A	10: 110,779,057	L541M	probably damaging	Het
Elovl5	T	A	9: 77,982,725	S273T	possibly damaging	Het
Emc1	T	A	4: 139,366,394	L605Q	probably damaging	Het
Fras1	T	A	5: 96,739,265	D2635E	probably benign	Het
Gabrb1	G	A	5: 72,108,347	G195E	probably damaging	Het
Galm	A	G	17: 80,150,132	D199G	possibly damaging	Het
Gm21671	A	T	5: 25,953,138	I72N	probably damaging	Het
Grb14	T	G	2: 64,938,400	Y189S	probably damaging	Het
Hk2	T	A	6: 82,728,914	I803F	probably damaging	Het
Hmcn1	G	A	1: 150,630,720	R3779W	probably damaging	Het
Hmgcr	A	C	13: 96,659,895	M260R	probably damaging	Het
Hsbp1l1	T	A	18: 80,233,424	K68N	possibly damaging	Het
Inhba	A	C	13: 16,017,678	E128A	probably benign	Het
Itpr3	G	A	17: 27,118,677		probably benign	Het
Klhl3	G	A	13: 58,019,459	P364S	probably damaging	Het
Lhpp	T	C	7: 132,641,583	L176P	probably damaging	Het
Lrp1b	C	A	2: 40,601,587	A223S	probably damaging	Het
Lrp3	A	G	7: 35,204,064	F286L	probably damaging	Het
Lrrc7	T	C	3: 158,135,391	T1337A	probably benign	Het
Magi2	A	G	5: 20,195,021	D17G	probably benign	Het
Map3k21	T	C	8: 125,924,164	S302P	probably damaging	Het
Mbtd1	A	G	11: 93,925,685	D386G	probably benign	Het
Mfsd2b	A	T	12: 4,866,820	D306E	possibly damaging	Het
Muc20	T	C	16: 32,794,083	E308G	probably damaging	Het
Myh13	G	A	11: 67,364,886	S34N		Het
Nebl	C	A	2: 17,369,610	G894*	probably null	Het
Nelfa	A	G	5: 33,898,751	Y523H	probably damaging	Het
Ninj1	A	G	13: 49,187,600	D13G	probably benign	Het
Ninl	A	T	2: 150,940,806	S170T	probably benign	Het
Nlrp4c	G	A	7: 6,065,627	V176M	possibly damaging	Het
Nobox	G	A	6: 43,307,181	R144C	probably damaging	Het
Oas1a	G	A	5: 120,899,254	L237F	probably damaging	Het
Olfr1099	A	G	2: 86,959,413	M15T	probably benign	Het
Olfr1153	T	C	2: 87,896,349	M50T	probably benign	Het
Olfr1254	A	C	2: 89,789,162	Y63*	probably null	Het
Olfr1348	A	G	7: 6,502,151	L25P	probably benign	Het
Olfr1356	T	C	10: 78,847,057	N286S	probably damaging	Het
Olfr625-ps1	A	T	7: 103,683,270	Y184F	probably damaging	Het
Orai1	A	G	5: 123,029,238	N158S	probably damaging	Het
Pa2g4	C	A	10: 128,563,098	V121L	probably benign	Het
Pclo	T	C	5: 14,521,236	S212P	possibly damaging	Het
Plce1	G	A	19: 38,777,893	E2121K	possibly damaging	Het
Plg	A	G	17: 12,403,137	Y448C	probably damaging	Het
Plppr4	A	T	3: 117,323,217	N330K	probably damaging	Het
Pou2f2	A	G	7: 25,094,822	L373S	probably benign	Het
Rnpep	A	G	1: 135,283,603	F136L	probably benign	Het
Rp1	A	G	1: 4,092,615		probably null	Het
Shank1	G	A	7: 44,312,918	S71N	unknown	Het
Slc5a4a	GCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGC	GCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGC	10: 76,150,404		probably benign	Het
Slc5a5	T	C	8: 70,884,952	D574G	probably benign	Het
Slc7a15	T	A	12: 8,538,794	N251I	probably damaging	Het
Susd4	T	C	1: 182,892,100	S427P	probably benign	Het
Tarbp1	T	A	8: 126,429,040	T1320S	probably benign	Het
Tbpl2	C	T	2: 24,094,638	V166I	probably benign	Het
Thbs1	T	C	2: 118,120,037		probably null	Het
Tnfsf13b	A	G	8: 10,031,648	Y270C	probably damaging	Het
Vps11	G	T	9: 44,348,993	C857*	probably null	Het
Vsig10	G	A	5: 117,325,039	R110H	probably benign	Het
Wee2	T	A	6: 40,455,110	Y204*	probably null	Het
Zfpm2	T	A	15: 41,103,471	S1117R	probably damaging	Het
Zscan5b	A	G	7: 6,231,473	N166S	probably benign	Het

Other mutations in Galntl6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00489:Galntl6	APN	8	57857540	missense	probably damaging	1.00
IGL00557:Galntl6	APN	8	58911417	missense	possibly damaging	0.71
IGL01140:Galntl6	APN	8	57958322	missense	probably damaging	1.00
IGL01412:Galntl6	APN	8	57777294	missense	probably damaging	0.99
IGL01458:Galntl6	APN	8	58427709	missense	probably damaging	1.00
IGL01575:Galntl6	APN	8	58427676	intron	probably benign
IGL01700:Galntl6	APN	8	57958460	splice site	probably benign
IGL01710:Galntl6	APN	8	58535968	missense	probably damaging	0.97
IGL02611:Galntl6	APN	8	57958416	missense	probably damaging	1.00
IGL02880:Galntl6	APN	8	57804272	missense	probably benign	0.44
IGL03129:Galntl6	APN	8	58427716	missense	probably damaging	1.00
IGL03215:Galntl6	APN	8	58911402	missense	probably benign	0.00
IGL03249:Galntl6	APN	8	57777176	utr 3 prime	probably benign
Fragilistic	UTSW	8	58535984	missense	probably benign
Indubitably	UTSW	8	58427770	missense	probably damaging	1.00
PIT4677001:Galntl6	UTSW	8	57857587	missense	probably damaging	1.00
R0600:Galntl6	UTSW	8	57837183	splice site	probably null
R0731:Galntl6	UTSW	8	58535984	missense	probably benign
R0961:Galntl6	UTSW	8	58911340	missense	probably benign
R1381:Galntl6	UTSW	8	58472955	missense	probably damaging	0.99
R2137:Galntl6	UTSW	8	58535905	critical splice donor site	probably null
R4632:Galntl6	UTSW	8	58427823	missense	probably damaging	1.00
R4731:Galntl6	UTSW	8	58427813	missense	probably damaging	1.00
R4732:Galntl6	UTSW	8	58427813	missense	probably damaging	1.00
R4733:Galntl6	UTSW	8	58427813	missense	probably damaging	1.00
R4920:Galntl6	UTSW	8	58427773	missense	probably damaging	0.97
R4964:Galntl6	UTSW	8	58699911	intron	probably benign
R5357:Galntl6	UTSW	8	57884463	missense	probably damaging	0.99
R5526:Galntl6	UTSW	8	58472970	missense	probably benign
R5951:Galntl6	UTSW	8	57962402	missense	probably benign	0.06
R5965:Galntl6	UTSW	8	57857531	missense	probably benign	0.03
R6260:Galntl6	UTSW	8	57884481	missense	probably damaging	1.00
R6368:Galntl6	UTSW	8	58911441	missense	probably damaging	1.00
R6695:Galntl6	UTSW	8	58427770	missense	probably damaging	1.00
R7593:Galntl6	UTSW	8	57777259	missense	probably damaging	1.00
R7780:Galntl6	UTSW	8	58427699	critical splice donor site	probably null
R7833:Galntl6	UTSW	8	57857537	missense	probably benign
R7871:Galntl6	UTSW	8	57837188	missense	probably damaging	0.98
R8097:Galntl6	UTSW	8	57962373	splice site	probably null
R8891:Galntl6	UTSW	8	57962399	missense	probably damaging	1.00
R9177:Galntl6	UTSW	8	57857556	nonsense	probably null
R9196:Galntl6	UTSW	8	57962427	missense	probably damaging	1.00
R9384:Galntl6	UTSW	8	57962427	missense	probably damaging	1.00
R9454:Galntl6	UTSW	8	57958401	missense	probably damaging	0.99
R9482:Galntl6	UTSW	8	57857515	critical splice donor site	probably null
R9497:Galntl6	UTSW	8	57837376	missense	probably damaging	0.99
Z1176:Galntl6	UTSW	8	57857558	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- CATCGTTCAACCAGGCTTCC -3'
(R):5'- TATGGATCCTTTGAACTCTGATCC -3'

Sequencing Primer
(F):5'- CCTGGGATCTAGGAAATGTTTCTCC -3'
(R):5'- TGAACTCTGATCCTCTTTGAGAG -3'

Posted On

2022-06-15