Mutagenetix > Incidental Mutation

Incidental Mutation 'R9475:Syce1l'

715711

Institutional Source

Beutler Lab

Gene Symbol

Syce1l

Ensembl Gene

ENSMUSG00000033409

Gene Name

synaptonemal complex central element protein 1 like

Synonyms

4930481F22Rik, mmrp2

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9475 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

114369845-114382165 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 114381735 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 204 (T204A)

Ref Sequence

ENSEMBL: ENSMUSP00000092796 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034219] [ENSMUST00000095173] [ENSMUST00000212269]

AlphaFold

Q5D525

Predicted Effect

unknown
Transcript: ENSMUST00000034219
AA Change: D225G

SMART Domains

Protein: ENSMUSP00000034219
Gene: ENSMUSG00000033409
AA Change: D225G

Domain	Start	End	E-Value	Type
Pfam:SYCE1	45	135	4.4e-39	PFAM
low complexity region	139	154	N/A	INTRINSIC
low complexity region	196	212	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000095173
AA Change: T204A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000092796
Gene: ENSMUSG00000033409
AA Change: T204A

Domain	Start	End	E-Value	Type
Pfam:SYCE1	45	172	8.3e-47	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000212269
AA Change: T183A

PolyPhen 2 Score 0.092 (Sensitivity: 0.93; Specificity: 0.85)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc6	A	T	7: 45,665,892 (GRCm39)	W243R	probably damaging	Het
Ablim1	T	G	19: 57,227,612 (GRCm39)	K18Q	probably benign	Het
Adamts18	T	A	8: 114,504,570 (GRCm39)	N174Y	possibly damaging	Het
Afg2a	T	C	3: 37,486,058 (GRCm39)	V260A	probably benign	Het
Agbl2	A	G	2: 90,614,437 (GRCm39)	H23R	probably benign	Het
Akap6	T	G	12: 53,057,335 (GRCm39)	Y934D	probably damaging	Het
Alas1	C	T	9: 106,111,261 (GRCm39)	S635N	probably benign	Het
Ankrd24	A	G	10: 81,478,133 (GRCm39)		probably null	Het
Atp6v0a4	A	G	6: 38,037,917 (GRCm39)	L560P	probably damaging	Het
Cacng1	C	T	11: 107,607,118 (GRCm39)	V34M	possibly damaging	Het
Clcn3	C	T	8: 61,387,551 (GRCm39)	A233T	probably damaging	Het
Cntnap3	A	G	13: 64,946,949 (GRCm39)	F160S	probably damaging	Het
Ctnnd2	A	G	15: 30,881,276 (GRCm39)	S719G	probably damaging	Het
Exosc2	G	A	2: 31,564,755 (GRCm39)	V107I	probably benign	Het
Fam83b	C	A	9: 76,399,085 (GRCm39)	V673F	probably benign	Het
Fras1	T	C	5: 96,927,929 (GRCm39)	F3781L	probably damaging	Het
Gal3st1	T	A	11: 3,948,660 (GRCm39)	L289H	probably damaging	Het
Garem1	T	C	18: 21,281,370 (GRCm39)	I329V	probably benign	Het
Gli3	G	A	13: 15,900,296 (GRCm39)	G1228S	possibly damaging	Het
Gpbp1l1	T	C	4: 116,431,558 (GRCm39)	F72S	possibly damaging	Het
Hao1	T	A	2: 134,390,181 (GRCm39)	M53L	probably benign	Het
Hjurp	CTCTGGGAGGGCTTGCTCCGGGGGCAGTGTGTCCTGTTCTTGTGCAGCCCCT	C	1: 88,193,999 (GRCm39)		probably benign	Het
Iqcm	A	G	8: 76,480,083 (GRCm39)	E347G	probably damaging	Het
Itpr3	G	A	17: 27,337,651 (GRCm39)		probably benign	Het
Kcnrg	A	G	14: 61,845,106 (GRCm39)	I49V	possibly damaging	Het
Lrrc8e	G	A	8: 4,285,346 (GRCm39)	G524S	probably benign	Het
Lrrn1	A	T	6: 107,545,261 (GRCm39)	Y353F	probably damaging	Het
Mdn1	A	G	4: 32,739,849 (GRCm39)	D3701G	possibly damaging	Het
Mtmr2	A	G	9: 13,716,767 (GRCm39)	T623A	probably benign	Het
Ndst4	C	A	3: 125,508,296 (GRCm39)	S287*	probably null	Het
Ntrk3	A	C	7: 77,952,480 (GRCm39)	M579R	probably benign	Het
Oas1a	G	A	5: 121,037,317 (GRCm39)	L237F	probably damaging	Het
Or2aj4	T	C	16: 19,385,270 (GRCm39)	D121G	probably benign	Het
Or5bw2	A	T	7: 6,573,818 (GRCm39)	Y276F	probably damaging	Het
Or7e166	T	C	9: 19,624,939 (GRCm39)	M272T	probably benign	Het
Paqr5	T	A	9: 61,863,507 (GRCm39)	I272F	probably damaging	Het
Pcdha11	T	A	18: 37,140,591 (GRCm39)	V740E	probably damaging	Het
Pdgfra	A	C	5: 75,328,588 (GRCm39)	N240T	possibly damaging	Het
Plbd2	G	A	5: 120,632,445 (GRCm39)	Q186*	probably null	Het
Plce1	G	A	19: 38,766,337 (GRCm39)	E2121K	possibly damaging	Het
Ppargc1a	C	A	5: 51,653,080 (GRCm39)	G161C	probably damaging	Het
Ptprk	T	C	10: 28,210,476 (GRCm39)	I166T	possibly damaging	Het
Rhox8	GCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT	GCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT	X: 36,966,991 (GRCm39)		probably benign	Het
Rpap2	T	A	5: 107,768,455 (GRCm39)	L431Q	probably damaging	Het
Rslcan18	T	A	13: 67,250,128 (GRCm39)	K160*	probably null	Het
Sema7a	T	C	9: 57,862,188 (GRCm39)	F180L	probably benign	Het
Sh2d3c	C	T	2: 32,643,039 (GRCm39)	L741F	probably damaging	Het
Shank1	G	A	7: 43,962,342 (GRCm39)	S71N	unknown	Het
Skic2	A	T	17: 35,060,078 (GRCm39)	D897E	probably benign	Het
Skint6	C	T	4: 112,664,037 (GRCm39)		probably null	Het
Slc35f3	T	C	8: 127,108,993 (GRCm39)	S181P	probably damaging	Het
Slc4a9	A	T	18: 36,662,269 (GRCm39)	E127V	probably null	Het
Speg	C	T	1: 75,364,735 (GRCm39)	T372I	probably damaging	Het
Tas2r138	T	A	6: 40,589,392 (GRCm39)	M285L	probably benign	Het
Tbc1d10a	G	C	11: 4,163,604 (GRCm39)	K285N	probably damaging	Het
Trim9	T	A	12: 70,393,228 (GRCm39)	M239L	probably benign	Het
Trp53bp1	A	G	2: 121,039,761 (GRCm39)	S1293P	probably benign	Het
Uaca	C	T	9: 60,779,498 (GRCm39)	T1295M	possibly damaging	Het
Ubald1	G	T	16: 4,693,433 (GRCm39)	Q161K	possibly damaging	Het
Ugt1a10	C	T	1: 88,143,982 (GRCm39)	R201C	probably damaging	Het
Vps45	T	G	3: 95,950,237 (GRCm39)	T231P	probably damaging	Het
Wdr17	A	T	8: 55,088,512 (GRCm39)	D1186E	probably benign	Het
Zfp534	G	A	4: 147,766,731 (GRCm39)	T8I	probably benign	Het
Zfp68	T	C	5: 138,605,517 (GRCm39)	N269D	probably benign	Het

Other mutations in Syce1l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00339:Syce1l	APN	8	114,376,134 (GRCm39)	missense	probably damaging	0.99
IGL00783:Syce1l	APN	8	114,379,494 (GRCm39)	missense	probably benign	0.23
IGL00784:Syce1l	APN	8	114,379,494 (GRCm39)	missense	probably benign	0.23
IGL02748:Syce1l	APN	8	114,382,097 (GRCm39)	utr 3 prime	probably benign
IGL03003:Syce1l	APN	8	114,380,699 (GRCm39)	missense	probably damaging	0.99
R0101:Syce1l	UTSW	8	114,382,061 (GRCm39)	missense	probably benign	0.41
R0486:Syce1l	UTSW	8	114,381,395 (GRCm39)	critical splice acceptor site	probably null
R0492:Syce1l	UTSW	8	114,380,700 (GRCm39)	missense	possibly damaging	0.86
R1709:Syce1l	UTSW	8	114,380,662 (GRCm39)	critical splice acceptor site	probably null
R1783:Syce1l	UTSW	8	114,381,466 (GRCm39)	missense	possibly damaging	0.66
R2307:Syce1l	UTSW	8	114,369,937 (GRCm39)	critical splice donor site	probably null
R3110:Syce1l	UTSW	8	114,381,579 (GRCm39)	missense	probably benign
R3111:Syce1l	UTSW	8	114,381,579 (GRCm39)	missense	probably benign
R3112:Syce1l	UTSW	8	114,381,579 (GRCm39)	missense	probably benign
R3790:Syce1l	UTSW	8	114,369,897 (GRCm39)	missense	possibly damaging	0.63
R5112:Syce1l	UTSW	8	114,378,274 (GRCm39)	missense	probably damaging	0.99
R5398:Syce1l	UTSW	8	114,379,145 (GRCm39)	missense	probably damaging	1.00
R6373:Syce1l	UTSW	8	114,376,143 (GRCm39)	missense	probably benign
R7407:Syce1l	UTSW	8	114,381,770 (GRCm39)	nonsense	probably null
R8296:Syce1l	UTSW	8	114,380,721 (GRCm39)	missense	possibly damaging	0.78
R9262:Syce1l	UTSW	8	114,380,738 (GRCm39)	critical splice donor site	probably null
R9600:Syce1l	UTSW	8	114,381,750 (GRCm39)	missense	unknown
Z1176:Syce1l	UTSW	8	114,382,049 (GRCm39)	missense	probably benign	0.26

Predicted Primers

PCR Primer
(F):5'- ACCTTGATGTCCCACTACCG -3'
(R):5'- GAGGCTTGGAAAACCTCTGATC -3'

Sequencing Primer
(F):5'- AGGGACTCTGCTGCGAG -3'
(R):5'- GGAAAACCTCTGATCCCTCTTCTCAG -3'

Posted On

2022-06-15