Mutagenetix > Incidental Mutation

Incidental Mutation 'R9479:Lonrf1'

716125

Institutional Source

Beutler Lab

Gene Symbol

Lonrf1

Ensembl Gene

ENSMUSG00000039633

Gene Name

LON peptidase N-terminal domain and ring finger 1

Synonyms

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.220) question?

Stock #

R9479 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

36683216-36716513 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

G to A at 36697668 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Stop codon at position 439 (R439*)

Ref Sequence

ENSEMBL: ENSMUSP00000066403 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000065297]

AlphaFold

D3YY23

Predicted Effect

probably null
Transcript: ENSMUST00000065297
AA Change: R439*

SMART Domains

Protein: ENSMUSP00000066403
Gene: ENSMUSG00000039633
AA Change: R439*

Domain	Start	End	E-Value	Type
low complexity region	8	38	N/A	INTRINSIC
low complexity region	54	68	N/A	INTRINSIC
low complexity region	106	161	N/A	INTRINSIC
RING	193	228	1.57e-2	SMART
SCOP:d1elwa_	274	387	3e-16	SMART
Blast:TPR	309	342	1e-14	BLAST
Blast:TPR	343	376	2e-15	BLAST
low complexity region	454	464	N/A	INTRINSIC
RING	543	580	3.12e-6	SMART
Pfam:LON_substr_bdg	631	830	8e-30	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.9%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aox3	A	G	1: 58,177,568 (GRCm39)	Y261C	probably benign	Het
Arhgef10	T	C	8: 15,047,632 (GRCm39)	V1165A	probably damaging	Het
Arih2	C	G	9: 108,488,938 (GRCm39)	R260P	probably damaging	Het
Bhmt2	G	A	13: 93,799,833 (GRCm39)	A201V	probably damaging	Het
Ccdc115	A	T	1: 34,476,895 (GRCm39)	S115T	possibly damaging	Het
Clca4b	A	G	3: 144,617,100 (GRCm39)	V850A	probably benign	Het
Commd8	A	T	5: 72,318,350 (GRCm39)	H144Q	probably benign	Het
Creb3l1	C	T	2: 91,822,231 (GRCm39)		probably null	Het
Csnka2ip	T	C	16: 64,298,262 (GRCm39)	K701E	unknown	Het
Cyb5d2	A	G	11: 72,669,702 (GRCm39)	C219R		Het
Ep400	T	C	5: 110,877,730 (GRCm39)	T835A	unknown	Het
Fam169a	A	G	13: 97,246,543 (GRCm39)	Y228C	possibly damaging	Het
Fam169a	A	G	13: 97,250,695 (GRCm39)	D342G	possibly damaging	Het
Fbxw21	A	T	9: 108,968,612 (GRCm39)	C455S	probably benign	Het
Fbxw26	A	G	9: 109,561,625 (GRCm39)	S190P	probably damaging	Het
Gabra5	A	G	7: 57,058,440 (GRCm39)	I436T		Het
Gm9767	G	A	10: 25,954,916 (GRCm39)	G156D		Het
Grid1	G	A	14: 35,043,664 (GRCm39)	D340N	probably damaging	Het
Gsn	T	C	2: 35,186,227 (GRCm39)		probably null	Het
Hao1	A	G	2: 134,396,204 (GRCm39)	S17P	probably benign	Het
Hspa1l	A	G	17: 35,196,735 (GRCm39)	N258S	probably benign	Het
Isyna1	C	T	8: 71,048,193 (GRCm39)	R200C	probably damaging	Het
Itgb2	A	T	10: 77,396,942 (GRCm39)	K659M	probably benign	Het
Klf11	T	C	12: 24,705,029 (GRCm39)	M161T	probably benign	Het
Ktn1	A	T	14: 47,962,174 (GRCm39)	K1114N	probably damaging	Het
Lrrc26	C	T	2: 25,180,571 (GRCm39)	P191S	probably benign	Het
Ogdh	T	C	11: 6,297,854 (GRCm39)	I576T	possibly damaging	Het
Or10al4	T	C	17: 38,036,986 (GRCm39)	S24P	probably damaging	Het
Or14c45	T	C	7: 86,176,285 (GRCm39)	C107R	possibly damaging	Het
Or14j4	A	G	17: 37,920,718 (GRCm39)	F308S	probably damaging	Het
Or4k40	A	T	2: 111,251,013 (GRCm39)	F94L	probably damaging	Het
Or4p20	T	C	2: 88,253,677 (GRCm39)	R231G	probably damaging	Het
Or7g20	G	A	9: 18,946,730 (GRCm39)	V104I	probably benign	Het
Pcnt	A	G	10: 76,217,963 (GRCm39)	V2104A	probably benign	Het
Pds5a	G	A	5: 65,792,747 (GRCm39)	R729W	probably damaging	Het
Pgap1	G	A	1: 54,582,275 (GRCm39)	Q191*	probably null	Het
Pglyrp3	A	G	3: 91,935,310 (GRCm39)	I187V	probably benign	Het
Pkdrej	T	A	15: 85,699,571 (GRCm39)	I2122F	possibly damaging	Het
Pold1	G	A	7: 44,191,079 (GRCm39)	R251W	probably damaging	Het
Prr22	A	G	17: 57,078,335 (GRCm39)	M163V	probably benign	Het
Ptprc	A	T	1: 138,001,388 (GRCm39)	N814K	probably benign	Het
Rapgef2	G	A	3: 79,019,495 (GRCm39)	L59F	probably damaging	Het
Rbm22	T	C	18: 60,699,492 (GRCm39)	L147P	probably damaging	Het
Rgsl1	G	A	1: 153,657,445 (GRCm39)	S391F	unknown	Het
Rnf13	A	T	3: 57,727,983 (GRCm39)	D221V	possibly damaging	Het
Senp2	T	A	16: 21,842,398 (GRCm39)	L154Q	probably damaging	Het
Srfbp1	A	G	18: 52,621,332 (GRCm39)	Q131R	possibly damaging	Het
Tmprss11a	A	T	5: 86,562,402 (GRCm39)	Y314*	probably null	Het
Ttn	G	T	2: 76,666,286 (GRCm39)	P11590Q	unknown	Het
Txnrd3	C	T	6: 89,640,084 (GRCm39)	T266M	possibly damaging	Het
Zfp810	T	C	9: 22,194,497 (GRCm39)	S64G	possibly damaging	Het

Other mutations in Lonrf1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00420:Lonrf1	APN	8	36,697,231 (GRCm39)	splice site	probably benign
IGL02195:Lonrf1	APN	8	36,687,102 (GRCm39)	nonsense	probably null
IGL03087:Lonrf1	APN	8	36,692,705 (GRCm39)	splice site	probably null
IGL03163:Lonrf1	APN	8	36,697,484 (GRCm39)	missense	probably benign	0.03
IGL03225:Lonrf1	APN	8	36,689,855 (GRCm39)	missense	probably damaging	0.96
BB009:Lonrf1	UTSW	8	36,690,070 (GRCm39)	missense	probably benign	0.17
BB019:Lonrf1	UTSW	8	36,690,070 (GRCm39)	missense	probably benign	0.17
R0480:Lonrf1	UTSW	8	36,689,864 (GRCm39)	missense	probably damaging	1.00
R0504:Lonrf1	UTSW	8	36,698,313 (GRCm39)	missense	possibly damaging	0.93
R0557:Lonrf1	UTSW	8	36,697,574 (GRCm39)	missense	probably benign	0.12
R1489:Lonrf1	UTSW	8	36,690,108 (GRCm39)	missense	probably damaging	1.00
R1572:Lonrf1	UTSW	8	36,701,126 (GRCm39)	missense	probably benign	0.02
R2225:Lonrf1	UTSW	8	36,703,252 (GRCm39)	missense	probably damaging	0.98
R2345:Lonrf1	UTSW	8	36,690,016 (GRCm39)	critical splice donor site	probably null
R4821:Lonrf1	UTSW	8	36,687,126 (GRCm39)	missense	probably benign
R4934:Lonrf1	UTSW	8	36,701,103 (GRCm39)	missense	probably damaging	1.00
R5538:Lonrf1	UTSW	8	36,690,178 (GRCm39)	critical splice acceptor site	probably null
R6124:Lonrf1	UTSW	8	36,696,354 (GRCm39)	missense	probably damaging	0.97
R6485:Lonrf1	UTSW	8	36,696,288 (GRCm39)	critical splice donor site	probably null
R6603:Lonrf1	UTSW	8	36,690,095 (GRCm39)	missense	probably damaging	1.00
R6886:Lonrf1	UTSW	8	36,696,191 (GRCm39)	splice site	probably null
R7113:Lonrf1	UTSW	8	36,697,664 (GRCm39)	missense	probably benign	0.01
R7689:Lonrf1	UTSW	8	36,715,918 (GRCm39)	nonsense	probably null
R7711:Lonrf1	UTSW	8	36,716,375 (GRCm39)	missense	probably damaging	1.00
R7743:Lonrf1	UTSW	8	36,716,206 (GRCm39)	missense	possibly damaging	0.72
R7932:Lonrf1	UTSW	8	36,690,070 (GRCm39)	missense	probably benign	0.17
R8085:Lonrf1	UTSW	8	36,715,769 (GRCm39)	missense	probably damaging	1.00
R8183:Lonrf1	UTSW	8	36,689,819 (GRCm39)	missense	possibly damaging	0.81
R8500:Lonrf1	UTSW	8	36,698,292 (GRCm39)	missense	probably benign	0.00
R8527:Lonrf1	UTSW	8	36,686,986 (GRCm39)	missense	possibly damaging	0.90
R8993:Lonrf1	UTSW	8	36,696,392 (GRCm39)	missense	possibly damaging	0.95
R9100:Lonrf1	UTSW	8	36,715,919 (GRCm39)	small deletion	probably benign
R9464:Lonrf1	UTSW	8	36,690,024 (GRCm39)	missense	probably benign	0.01
R9717:Lonrf1	UTSW	8	36,701,164 (GRCm39)	missense	probably damaging	1.00
R9794:Lonrf1	UTSW	8	36,703,235 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- GAGACAGCTTTCGTTTGAGC -3'
(R):5'- ACAGTGCTGTGACATCAGTC -3'

Sequencing Primer
(F):5'- ACAGCTTTCGTTTGAGCAGGAC -3'
(R):5'- GTCAGCATGATACCTAAGGCTC -3'

Posted On

2022-07-18