Mutagenetix > Incidental Mutation

Incidental Mutation 'R9500:Or13p4'

717480

Institutional Source

Beutler Lab

Gene Symbol

Or13p4

Ensembl Gene

ENSMUSG00000043383

Gene Name

olfactory receptor family 13 subfamily P member 4

Synonyms

GA_x6K02T2QD9B-18856980-18857927, MOR258-3, Olfr1342

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.079) question?

Stock #

R9500 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

118546349-118550231 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 118546930 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 240 (S240P)

Ref Sequence

ENSEMBL: ENSMUSP00000149966 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000060562] [ENSMUST00000216226]

AlphaFold

Q8VFY3

Predicted Effect

possibly damaging
Transcript: ENSMUST00000060562
AA Change: S240P

PolyPhen 2 Score 0.911 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000053925
Gene: ENSMUSG00000043383
AA Change: S240P

Domain	Start	End	E-Value	Type
low complexity region	10	24	N/A	INTRINSIC
Pfam:7tm_4	34	311	1.5e-55	PFAM
Pfam:7TM_GPCR_Srsx	38	243	1.6e-5	PFAM
Pfam:7tm_1	44	293	4.2e-20	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000216226
AA Change: S240P

PolyPhen 2 Score 0.911 (Sensitivity: 0.81; Specificity: 0.94)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

MGI Phenotype

FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310022A10Rik	C	T	7: 27,265,091 (GRCm39)	T107I	possibly damaging	Het
Acyp1	T	A	12: 85,325,786 (GRCm39)	Y71F	unknown	Het
Akap11	A	T	14: 78,748,543 (GRCm39)	H1281Q		Het
Amz1	T	C	5: 140,737,975 (GRCm39)	Y412H	probably benign	Het
Anxa10	C	T	8: 62,545,545 (GRCm39)	M62I	probably benign	Het
Arhgap25	T	C	6: 87,469,184 (GRCm39)	K109E	probably damaging	Het
Arhgap31	T	A	16: 38,460,683 (GRCm39)	E43D	probably damaging	Het
Atf6	T	C	1: 170,574,708 (GRCm39)	M577V	probably damaging	Het
Auts2	C	A	5: 131,505,620 (GRCm39)	A82S	unknown	Het
Bcl3	T	C	7: 19,556,602 (GRCm39)	M1V	probably null	Het
Cblb	T	C	16: 51,959,993 (GRCm39)		probably null	Het
Cc2d2b	T	C	19: 40,797,840 (GRCm39)	V820A	unknown	Het
Clint1	T	G	11: 45,797,194 (GRCm39)	M425R	possibly damaging	Het
Clvs1	A	G	4: 9,429,834 (GRCm39)	D279G	probably damaging	Het
Colec11	A	C	12: 28,645,302 (GRCm39)	I123S	probably damaging	Het
Crebbp	C	T	16: 3,911,355 (GRCm39)	E1460K	probably damaging	Het
Cyp2t4	G	A	7: 26,854,717 (GRCm39)	V66M	possibly damaging	Het
Dcaf8	C	G	1: 171,999,909 (GRCm39)	S22R	possibly damaging	Het
Dmxl1	T	C	18: 50,011,271 (GRCm39)	S1143P	probably damaging	Het
Dnhd1	T	C	7: 105,353,709 (GRCm39)	I2954T	probably benign	Het
Dop1b	C	T	16: 93,607,171 (GRCm39)	P2275L	probably benign	Het
Drc3	A	G	11: 60,261,334 (GRCm39)	S162G	probably benign	Het
Ehd2	T	C	7: 15,686,077 (GRCm39)	I332V	possibly damaging	Het
Eml1	T	A	12: 108,493,958 (GRCm39)	D584E	probably damaging	Het
Eogt	T	C	6: 97,096,992 (GRCm39)	T339A	probably benign	Het
Gbf1	A	G	19: 46,258,389 (GRCm39)	T949A	probably benign	Het
Gm11568	GCTGCTGCCAGCCCTGCTGCCAGCCC	GCTGCTGCCAGCCCTGCTGCCAGCCCTGCTGCCAGCCC	11: 99,749,044 (GRCm39)		probably benign	Het
Gm11568	AGCCC	AGCCCTGCTGCCTGCCC	11: 99,749,065 (GRCm39)		probably benign	Het
Gtpbp10	A	T	5: 5,606,120 (GRCm39)	C88*	probably null	Het
Ifit1bl2	A	T	19: 34,596,508 (GRCm39)	Y369*	probably null	Het
Igsf6	A	G	7: 120,673,697 (GRCm39)	L11P	probably benign	Het
Lars1	A	T	18: 42,361,726 (GRCm39)	I627N	probably damaging	Het
Lmo3	G	T	6: 138,393,621 (GRCm39)	Q11K		Het
Mical2	A	T	7: 111,936,054 (GRCm39)		probably null	Het
Mmp23	A	G	4: 155,736,567 (GRCm39)	V158A	probably benign	Het
Mmp24	T	C	2: 155,654,195 (GRCm39)	I391T	probably damaging	Het
Mrgpra3	A	T	7: 47,239,400 (GRCm39)	Y175*	probably null	Het
Mrpl23	G	A	7: 142,089,859 (GRCm39)	V65M	probably damaging	Het
Mup1	A	G	4: 60,456,488 (GRCm39)	L85S	possibly damaging	Het
Myo15b	T	C	11: 115,777,466 (GRCm39)	L747S	probably damaging	Het
Nanog	G	T	6: 122,690,219 (GRCm39)	W208L	probably damaging	Het
Nkg7	A	G	7: 43,087,229 (GRCm39)	Y112C	probably damaging	Het
Nup155	A	G	15: 8,141,800 (GRCm39)	D64G	probably damaging	Het
Palm3	T	C	8: 84,753,636 (GRCm39)	S108P	probably damaging	Het
Pam	T	C	1: 97,772,325 (GRCm39)	N579D	probably benign	Het
Pclo	A	G	5: 14,725,648 (GRCm39)	E1502G	unknown	Het
Pde4dip	A	G	3: 97,795,896 (GRCm39)	S31P	unknown	Het
Peg10	A	T	6: 4,756,871 (GRCm39)	K482N	unknown	Het
Phf19	A	T	2: 34,801,708 (GRCm39)	L34*	probably null	Het
Pla2g2c	A	T	4: 138,461,689 (GRCm39)	K53*	probably null	Het
Pla2g4f	T	A	2: 120,142,713 (GRCm39)		probably null	Het
Polk	G	T	13: 96,630,349 (GRCm39)	T404K	probably damaging	Het
Prkdc	T	A	16: 15,657,079 (GRCm39)	V4058D	possibly damaging	Het
Prox2	T	A	12: 85,134,851 (GRCm39)	I477F	probably damaging	Het
Ptk6	A	G	2: 180,837,566 (GRCm39)	V451A	probably benign	Het
Ptpn3	C	T	4: 57,205,914 (GRCm39)	E693K	possibly damaging	Het
Rag2	G	A	2: 101,461,217 (GRCm39)	G509D	probably damaging	Het
Rapgef2	A	G	3: 78,974,093 (GRCm39)	C1418R	probably benign	Het
Rev1	A	T	1: 38,102,214 (GRCm39)	Y716*	probably null	Het
Rsl1d1	T	A	16: 11,011,385 (GRCm39)	T440S	possibly damaging	Het
Samd14	T	A	11: 94,914,372 (GRCm39)	Y343*	probably null	Het
Sema3a	A	T	5: 13,615,854 (GRCm39)	D426V	possibly damaging	Het
Slc7a11	G	A	3: 50,382,201 (GRCm39)	T182M	probably benign	Het
Slitrk5	A	G	14: 111,916,726 (GRCm39)	I117V	possibly damaging	Het
Son	AGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCG	AGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCG	16: 91,457,222 (GRCm39)		probably benign	Het
Stil	A	T	4: 114,878,716 (GRCm39)	H384L	possibly damaging	Het
Suclg2	C	A	6: 95,546,666 (GRCm39)	R270L	probably damaging	Het
Taf5	A	G	19: 47,065,771 (GRCm39)	D492G	probably damaging	Het
Tes3-ps	T	A	13: 49,647,815 (GRCm39)	Y230*	probably null	Het
Ttc41	G	T	10: 86,565,726 (GRCm39)	A427S	probably benign	Het
Ttn	T	C	2: 76,553,994 (GRCm39)	D30903G	probably damaging	Het
Txndc16	A	T	14: 45,406,798 (GRCm39)	L219Q	probably null	Het
Usp34	T	A	11: 23,331,337 (GRCm39)	H1098Q	probably damaging	Het
Vmn2r52	T	A	7: 9,905,281 (GRCm39)	Y186F	probably damaging	Het
Zbtb41	T	C	1: 139,359,806 (GRCm39)	F512S	probably damaging	Het

Other mutations in Or13p4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01823:Or13p4	APN	4	118,546,918 (GRCm39)	missense	probably damaging	1.00
IGL02391:Or13p4	APN	4	118,547,538 (GRCm39)	missense	probably damaging	1.00
R0648:Or13p4	UTSW	4	118,547,269 (GRCm39)	missense	probably benign
R1565:Or13p4	UTSW	4	118,547,389 (GRCm39)	missense	probably damaging	1.00
R1675:Or13p4	UTSW	4	118,547,145 (GRCm39)	missense	probably benign	0.00
R1823:Or13p4	UTSW	4	118,547,389 (GRCm39)	missense	probably damaging	1.00
R2343:Or13p4	UTSW	4	118,547,384 (GRCm39)	missense	probably benign	0.30
R4618:Or13p4	UTSW	4	118,546,667 (GRCm39)	utr 3 prime	probably benign
R4941:Or13p4	UTSW	4	118,547,089 (GRCm39)	missense	possibly damaging	0.76
R5408:Or13p4	UTSW	4	118,547,641 (GRCm39)	missense	probably benign	0.00
R5587:Or13p4	UTSW	4	118,547,067 (GRCm39)	missense	probably damaging	1.00
R5895:Or13p4	UTSW	4	118,547,314 (GRCm39)	missense	probably damaging	0.97
R6023:Or13p4	UTSW	4	118,547,271 (GRCm39)	missense	probably damaging	1.00
R6307:Or13p4	UTSW	4	118,547,145 (GRCm39)	missense	probably benign	0.00
R6324:Or13p4	UTSW	4	118,547,728 (GRCm39)	start gained	probably benign
R6890:Or13p4	UTSW	4	118,546,728 (GRCm39)	missense	possibly damaging	0.72
R7218:Or13p4	UTSW	4	118,547,215 (GRCm39)	missense	probably benign
R7408:Or13p4	UTSW	4	118,546,859 (GRCm39)	missense	probably damaging	0.98
R7555:Or13p4	UTSW	4	118,546,839 (GRCm39)	missense	possibly damaging	0.94
R7749:Or13p4	UTSW	4	118,547,425 (GRCm39)	missense	probably damaging	1.00
R8098:Or13p4	UTSW	4	118,547,406 (GRCm39)	missense	possibly damaging	0.88
R8493:Or13p4	UTSW	4	118,547,229 (GRCm39)	missense	probably benign	0.01
R9445:Or13p4	UTSW	4	118,547,416 (GRCm39)	missense	probably damaging	0.98
Z1176:Or13p4	UTSW	4	118,547,469 (GRCm39)	missense	probably benign	0.31

Predicted Primers

PCR Primer
(F):5'- AATCCTGGCTCACTTGGCTG -3'
(R):5'- ATCAACCACTTCTTCTGTGAGGTC -3'

Sequencing Primer
(F):5'- GTCTCCTAGTACTTTCAGAAAAGCAC -3'
(R):5'- CCCCGCTGTCCTGAAGTTG -3'

Posted On

2022-07-18