Mutagenetix > Incidental Mutation

Incidental Mutation 'R9542:Trmt112'

719967

Institutional Source

Beutler Lab

Gene Symbol

Trmt112

Ensembl Gene

ENSMUSG00000038812

Gene Name

tRNA methyltransferase 11-2

Synonyms

0610038D11Rik, Trm112p

MMRRC Submission

Accession Numbers

Essential gene?

Probably essential (E-score: 0.959) question?

Stock #

R9542 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

6887066-6888396 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 6887956 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Serine at position 62 (N62S)

Ref Sequence

ENSEMBL: ENSMUSP00000085591 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000025904] [ENSMUST00000025906] [ENSMUST00000088257] [ENSMUST00000116551] [ENSMUST00000149261] [ENSMUST00000173091] [ENSMUST00000173635] [ENSMUST00000174786]

AlphaFold

Q9DCG9

Predicted Effect

probably benign
Transcript: ENSMUST00000025904

SMART Domains

Protein: ENSMUSP00000025904
Gene: ENSMUSG00000024953

Domain	Start	End	E-Value	Type
Pfam:Redoxin	53	206	1e-31	PFAM
Pfam:AhpC-TSA	54	189	8.4e-19	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000025906

SMART Domains

Protein: ENSMUSP00000025906
Gene: ENSMUSG00000024955

Domain	Start	End	E-Value	Type
internal_repeat_1	5	21	6.74e-5	PROSPERO
low complexity region	52	67	N/A	INTRINSIC
ZnF_C4	76	147	2.16e-40	SMART
low complexity region	169	187	N/A	INTRINSIC
internal_repeat_1	202	218	6.74e-5	PROSPERO
HOLI	229	391	9.21e-35	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000088257
AA Change: N62S

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000085591
Gene: ENSMUSG00000038812
AA Change: N62S

Domain	Start	End	E-Value	Type
Pfam:Trm112p	2	112	1.3e-20	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000116551
AA Change: N62S

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000112250
Gene: ENSMUSG00000038812
AA Change: N62S

Domain	Start	End	E-Value	Type
Pfam:Trm112p	2	112	1.3e-20	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000149261

SMART Domains

Protein: ENSMUSP00000135084
Gene: ENSMUSG00000024953

Domain	Start	End	E-Value	Type
Pfam:Redoxin	56	210	1.1e-31	PFAM
Pfam:AhpC-TSA	57	192	6.8e-17	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000173091

SMART Domains

Protein: ENSMUSP00000134521
Gene: ENSMUSG00000024953

Domain	Start	End	E-Value	Type
Pfam:Redoxin	53	99	3.3e-11	PFAM
Pfam:AhpC-TSA	54	100	9.3e-8	PFAM
Pfam:Redoxin	97	163	1.8e-7	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000173635

SMART Domains

Protein: ENSMUSP00000134587
Gene: ENSMUSG00000024955

Domain	Start	End	E-Value	Type
PDB:1LO1\|A	1	21	6e-7	PDB
low complexity region	26	44	N/A	INTRINSIC
Pfam:Hormone_recep	65	158	4.7e-18	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000174786
AA Change: N62S

PolyPhen 2 Score 0.170 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000134000
Gene: ENSMUSG00000038812
AA Change: N62S

Domain	Start	End	E-Value	Type
Pfam:Trm112p	2	101	5.6e-11	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.3%
20x: 97.4%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acbd6	T	C	1: 155,443,356 (GRCm39)	S105P	probably benign	Het
Acot12	G	A	13: 91,931,110 (GRCm39)	V453M	probably damaging	Het
Actr2	C	T	11: 20,044,350 (GRCm39)	M85I	probably benign	Het
Anxa9	T	C	3: 95,210,379 (GRCm39)	D62G	probably benign	Het
Arnt	C	T	3: 95,397,954 (GRCm39)	A599V	probably benign	Het
Ash1l	A	G	3: 88,950,566 (GRCm39)	E2153G	probably damaging	Het
Asic5	A	T	3: 81,911,850 (GRCm39)	T149S	probably benign	Het
Atcay	G	A	10: 81,043,686 (GRCm39)	T353I	unknown	Het
Aven	T	C	2: 112,455,517 (GRCm39)	F143L	probably damaging	Het
BB014433	GCACACAGCTTTGGAGGTGTACACACCCGGGTTGGGGCCTCTACACACAGCTTTGGAGGTGTACACACCCGGGTTGGGGCCTCTGCACACAGCTTTGG	GCACACAGCTTTGGAGGTGTACACACCCGGGTTGGGGCCTCTGCACACAGCTTTGG	8: 15,092,160 (GRCm39)		probably benign	Het
BC024139	T	A	15: 76,009,715 (GRCm39)	L149F	probably damaging	Het
C3	T	C	17: 57,532,037 (GRCm39)	Y228C	probably damaging	Het
Cacna1d	A	G	14: 29,845,316 (GRCm39)	F640L	probably benign	Het
Ccdc187	T	C	2: 26,145,930 (GRCm39)	R1220G	possibly damaging	Het
Cdc42bpb	G	A	12: 111,268,508 (GRCm39)	Q1231*	probably null	Het
Cdh20	T	A	1: 104,875,067 (GRCm39)	V283E	probably damaging	Het
Cep63	T	C	9: 102,484,533 (GRCm39)	I241V	probably benign	Het
Dis3	A	G	14: 99,316,975 (GRCm39)	V787A	probably damaging	Het
Dock9	A	G	14: 121,864,775 (GRCm39)	F727S	probably damaging	Het
Eif5b	G	T	1: 38,057,131 (GRCm39)	E63*	probably null	Het
Fanca	A	G	8: 124,023,078 (GRCm39)	V553A	probably damaging	Het
Flacc1	C	T	1: 58,717,504 (GRCm39)	A136T	probably benign	Het
Gm37240	A	C	3: 84,417,196 (GRCm39)	H174Q	probably benign	Het
Kcnc4	C	T	3: 107,365,571 (GRCm39)	W212*	probably null	Het
Myh2	G	A	11: 67,072,002 (GRCm39)	E577K	possibly damaging	Het
Ncoa1	C	T	12: 4,325,178 (GRCm39)	V967I	possibly damaging	Het
Nmur2	T	C	11: 55,931,649 (GRCm39)	T21A	probably damaging	Het
Nrde2	A	G	12: 100,110,426 (GRCm39)	C197R	probably damaging	Het
Or2m12	A	T	16: 19,104,943 (GRCm39)	D183E	probably benign	Het
Or2o1	C	A	11: 49,051,073 (GRCm39)	C77*	probably null	Het
Or52ad1	T	C	7: 102,995,569 (GRCm39)	I189V	probably benign	Het
Or8h7	G	T	2: 86,720,813 (GRCm39)	H235Q	probably benign	Het
Pard3b	C	T	1: 62,250,786 (GRCm39)	R572*	probably null	Het
Pdcd6ip	T	C	9: 113,520,589 (GRCm39)	S132G	probably damaging	Het
Pdzrn3	A	T	6: 101,149,235 (GRCm39)	F364L	probably benign	Het
Pfpl	G	C	19: 12,406,297 (GRCm39)	E183Q	probably damaging	Het
Pgr	G	T	9: 8,901,532 (GRCm39)	C355F	possibly damaging	Het
Pkhd1	T	G	1: 20,188,004 (GRCm39)	S3435R	probably damaging	Het
Pkhd1l1	A	G	15: 44,410,284 (GRCm39)	D2597G	probably benign	Het
Pramel30	T	C	4: 144,057,095 (GRCm39)	Y93H	possibly damaging	Het
Prrc2c	T	C	1: 162,508,359 (GRCm39)	E2410G	possibly damaging	Het
Rpap2	C	G	5: 107,768,180 (GRCm39)	S339R	probably benign	Het
Rrp36	G	C	17: 46,983,492 (GRCm39)	R69G	possibly damaging	Het
Rrp8	T	C	7: 105,382,606 (GRCm39)	T449A	probably benign	Het
Scn3a	T	C	2: 65,366,860 (GRCm39)	D54G	probably damaging	Het
Serinc2	C	T	4: 130,152,516 (GRCm39)	W228*	probably null	Het
Serpinb9g	A	G	13: 33,679,141 (GRCm39)	K337R	probably benign	Het
Slc28a2b	A	T	2: 122,324,822 (GRCm39)	K131N	probably benign	Het
Spata31	A	T	13: 65,070,077 (GRCm39)	I742F	probably damaging	Het
Speg	C	T	1: 75,399,426 (GRCm39)	P2291L	probably benign	Het
Ss18l2	T	A	9: 121,541,666 (GRCm39)	L61*	probably null	Het
Suco	C	T	1: 161,661,668 (GRCm39)	R921H	probably damaging	Het
Taok2	A	T	7: 126,466,008 (GRCm39)	I910N	probably damaging	Het
Tmem18	G	A	12: 30,638,557 (GRCm39)	M106I		Het
Tob1	T	G	11: 94,105,234 (GRCm39)	S257A	unknown	Het
Trim67	G	C	8: 125,521,497 (GRCm39)	K286N	possibly damaging	Het
Tsc2	C	T	17: 24,819,308 (GRCm39)		probably null	Het
Ttn	C	T	2: 76,715,357 (GRCm39)	E7912K	unknown	Het
Ube2j1	G	T	4: 33,040,793 (GRCm39)	E100*	probably null	Het
Urgcp	A	T	11: 5,667,517 (GRCm39)	F317I	possibly damaging	Het
Vps9d1	A	T	8: 123,970,522 (GRCm39)	D588E	probably damaging	Het
Wdr38	A	T	2: 38,890,210 (GRCm39)	T115S	probably damaging	Het
Zfp119a	G	A	17: 56,172,593 (GRCm39)	Q417*	probably null	Het
Zfp687	C	T	3: 94,916,442 (GRCm39)	C860Y	probably damaging	Het
Zmym4	T	C	4: 126,799,164 (GRCm39)	N724S	probably benign	Het

Other mutations in Trmt112

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R1184:Trmt112	UTSW	19	6,887,721 (GRCm39)	splice site	probably benign
R4646:Trmt112	UTSW	19	6,887,816 (GRCm39)	missense	possibly damaging	0.69
R4962:Trmt112	UTSW	19	6,887,566 (GRCm39)	missense	probably damaging	1.00
R5022:Trmt112	UTSW	19	6,888,121 (GRCm39)	missense	probably benign	0.41
R5023:Trmt112	UTSW	19	6,888,121 (GRCm39)	missense	probably benign	0.41
R5057:Trmt112	UTSW	19	6,888,121 (GRCm39)	missense	probably benign	0.41
R5547:Trmt112	UTSW	19	6,888,156 (GRCm39)	missense	probably damaging	0.99
R6831:Trmt112	UTSW	19	6,887,563 (GRCm39)	missense	probably damaging	1.00
R9126:Trmt112	UTSW	19	6,887,786 (GRCm39)	missense
R9150:Trmt112	UTSW	19	6,887,620 (GRCm39)	missense	probably damaging	1.00
R9169:Trmt112	UTSW	19	6,888,187 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGGAGTTCAACCCGGAGTTC -3'
(R):5'- AGATTCTGGGCATTGCAGG -3'

Sequencing Primer
(F):5'- TTCAACCCGGAGTTCGTGGC -3'
(R):5'- GGGTGCCCTCCAGTACATCAAC -3'

Posted On

2022-07-18