Mutagenetix > Incidental Mutation

Incidental Mutation 'R9544:Cul3'

719970

Institutional Source

Beutler Lab

Gene Symbol

Cul3

Ensembl Gene

ENSMUSG00000004364

Gene Name

cullin 3

Synonyms

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R9544 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

80242640-80318197 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 80258576 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Leucine at position 487 (F487L)

Ref Sequence

ENSEMBL: ENSMUSP00000130738 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000163119] [ENSMUST00000164108]

AlphaFold

Q9JLV5

PDB Structure

Solution structure of the cullin-3 homologue [SOLUTION NMR]

Predicted Effect

probably damaging
Transcript: ENSMUST00000163119
AA Change: F487L

PolyPhen 2 Score 0.974 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000130738
Gene: ENSMUSG00000004364
AA Change: F487L

Domain	Start	End	E-Value	Type
PDB:4AP2\|B	1	389	N/A	PDB
SCOP:d1ldja2	30	382	1e-117	SMART
Blast:CULLIN	258	295	2e-15	BLAST
CULLIN	413	563	1.98e-90	SMART
Cullin_Nedd8	695	762	1.49e-36	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000164108
AA Change: F421L

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000131891
Gene: ENSMUSG00000004364
AA Change: F421L

Domain	Start	End	E-Value	Type
SCOP:d1ldja2	23	316	1e-101	SMART
PDB:4APF\|B	23	323	N/A	PDB
Blast:CULLIN	192	229	1e-15	BLAST
CULLIN	347	497	1.98e-90	SMART
Cullin_Nedd8	629	696	1.49e-36	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000168372

SMART Domains

Protein: ENSMUSP00000132485
Gene: ENSMUSG00000004364

Domain	Start	End	E-Value	Type
Cullin_Nedd8	38	105	3.28e-6	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.1%
20x: 96.7%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the cullin protein family. The encoded protein plays a critical role in the polyubiquitination and subsequent degradation of specific protein substrates as the core component and scaffold protein of an E3 ubiquitin ligase complex. Complexes including the encoded protein may also play a role in late endosome maturation. Mutations in this gene are a cause of type 2E pseudohypoaldosteronism. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Mar 2012]
PHENOTYPE: Homozygotes for a targeted null mutation accumulate cyclin E, exhibit abnormal cycling in cells of extraembryonic ectoderm and trophectoderm, reduced size, abnormal gastrulation and trophoblast cells, absence of an amnion, and death by embryonic day 7.5. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
5530400C23Rik	A	G	6: 133,271,202 (GRCm39)	E82G	possibly damaging	Het
Adra2a	C	G	19: 54,035,454 (GRCm39)	P270R	probably benign	Het
Alox12b	A	T	11: 69,054,812 (GRCm39)	I272F	possibly damaging	Het
Als2	C	A	1: 59,250,468 (GRCm39)	E425D	probably benign	Het
Arhgap21	C	A	2: 20,858,938 (GRCm39)	C1252F	possibly damaging	Het
Arhgap31	T	G	16: 38,423,976 (GRCm39)	T697P	probably damaging	Het
Aspm	C	A	1: 139,385,523 (GRCm39)	T389K	probably benign	Het
B4galnt3	T	A	6: 120,209,905 (GRCm39)	I73F	probably damaging	Het
Btn2a2	A	G	13: 23,672,008 (GRCm39)	V27A	probably benign	Het
Cep97	A	T	16: 55,735,303 (GRCm39)	N570K	possibly damaging	Het
Cfh	T	C	1: 140,036,266 (GRCm39)	I751V	probably benign	Het
Chd3	A	G	11: 69,241,046 (GRCm39)	C1516R	probably damaging	Het
Dock1	T	C	7: 134,348,186 (GRCm39)	S266P	possibly damaging	Het
Dock6	A	T	9: 21,732,830 (GRCm39)	Y1118*	probably null	Het
Dolpp1	T	A	2: 30,282,515 (GRCm39)	Y23N	probably damaging	Het
Egf	T	C	3: 129,511,617 (GRCm39)	M517V	probably benign	Het
Endou	C	A	15: 97,609,969 (GRCm39)	K442N	probably damaging	Het
Fam210b	C	T	2: 172,194,633 (GRCm39)	R162W	probably damaging	Het
Fbxw27	ATGT	AT	9: 109,602,322 (GRCm39)		probably null	Het
Flt3	T	A	5: 147,291,442 (GRCm39)	Q641L	possibly damaging	Het
Ighv3-3	T	A	12: 114,160,270 (GRCm39)	I47F	probably damaging	Het
Il4	C	T	11: 53,504,837 (GRCm39)	R76H	probably damaging	Het
Inpp5f	A	C	7: 128,278,515 (GRCm39)	D435A	possibly damaging	Het
Kcnq2	T	G	2: 180,729,407 (GRCm39)	D532A	probably damaging	Het
Krtap11-1	A	C	16: 89,368,062 (GRCm39)		probably benign	Het
Lamp3	T	A	16: 19,494,832 (GRCm39)		probably null	Het
Lcn3	A	T	2: 25,656,151 (GRCm39)	I69L	probably benign	Het
Lrrc43	A	T	5: 123,641,307 (GRCm39)	H497L	probably damaging	Het
Luc7l2	T	G	6: 38,580,315 (GRCm39)	S305A	unknown	Het
Malrd1	C	T	2: 15,640,809 (GRCm39)	T513I	unknown	Het
Mllt3	T	A	4: 87,759,418 (GRCm39)	D210V	probably damaging	Het
Mmp14	A	G	14: 54,673,251 (GRCm39)	H53R	possibly damaging	Het
Ndst4	A	C	3: 125,476,808 (GRCm39)	H11P	probably damaging	Het
Nln	G	A	13: 104,198,356 (GRCm39)	T152M	probably benign	Het
Oas1c	A	G	5: 120,946,202 (GRCm39)	F99L	probably benign	Het
Or10s1	T	C	9: 39,986,353 (GRCm39)	L254P	probably damaging	Het
Or1e35	T	C	11: 73,797,637 (GRCm39)	K227R	probably benign	Het
Or1j11	G	T	2: 36,311,784 (GRCm39)	A125S	probably damaging	Het
Or5w15	G	A	2: 87,568,644 (GRCm39)	T8I	probably benign	Het
Or7g25	T	A	9: 19,160,561 (GRCm39)	I45F	probably damaging	Het
Pappa2	C	A	1: 158,784,817 (GRCm39)	Q64H	probably damaging	Het
Pcdhb15	T	C	18: 37,608,948 (GRCm39)	F727L	probably benign	Het
Pcsk1	A	T	13: 75,259,039 (GRCm39)	N271I	probably damaging	Het
Pkhd1l1	G	A	15: 44,410,239 (GRCm39)	G2582D	probably damaging	Het
Psma4	A	T	9: 54,862,245 (GRCm39)	Q123L	probably damaging	Het
Selenbp2	A	T	3: 94,605,368 (GRCm39)	I127F	possibly damaging	Het
Shank1	G	A	7: 43,962,342 (GRCm39)	S71N	unknown	Het
Slc29a3	G	T	10: 60,551,960 (GRCm39)	C361*	probably null	Het
Slx4	C	A	16: 3,797,917 (GRCm39)	R1489L	probably damaging	Het
Sorl1	A	C	9: 41,993,105 (GRCm39)	Y306*	probably null	Het
Tbc1d16	G	T	11: 119,101,335 (GRCm39)	H58Q	probably damaging	Het
Tfdp2	A	G	9: 96,169,663 (GRCm39)	T5A	probably damaging	Het
Thbs1	G	T	2: 117,953,932 (GRCm39)	G1061V	probably damaging	Het
Timm29	G	A	9: 21,504,662 (GRCm39)	R110H	probably damaging	Het
Tmf1	C	T	6: 97,147,293 (GRCm39)	E558K	possibly damaging	Het
Trappc11	T	C	8: 47,972,713 (GRCm39)	T287A	possibly damaging	Het
Unc119b	G	A	5: 115,272,827 (GRCm39)	T48M	probably benign	Het
Vmn1r123	T	C	7: 20,896,987 (GRCm39)	I293T	probably benign	Het
Vmn2r67	G	A	7: 84,786,317 (GRCm39)	H563Y	possibly damaging	Het
Vps8	G	T	16: 21,336,893 (GRCm39)	V763L	probably benign	Het
Wdr3	A	T	3: 100,050,752 (GRCm39)	Y722*	probably null	Het
Xrn1	A	G	9: 95,920,756 (GRCm39)	T1339A	probably benign	Het
Zfp827	T	A	8: 79,905,604 (GRCm39)	H860Q	probably damaging	Het

Other mutations in Cul3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00558:Cul3	APN	1	80,266,457 (GRCm39)	splice site	probably benign
IGL01454:Cul3	APN	1	80,281,900 (GRCm39)	missense	probably damaging	0.97
IGL01510:Cul3	APN	1	80,260,396 (GRCm39)	missense	probably damaging	1.00
IGL01701:Cul3	APN	1	80,255,140 (GRCm39)	missense	probably damaging	0.97
IGL02117:Cul3	APN	1	80,300,781 (GRCm39)	splice site	probably benign
IGL02194:Cul3	APN	1	80,300,754 (GRCm39)	missense	probably benign	0.03
IGL02217:Cul3	APN	1	80,261,484 (GRCm39)	missense	probably damaging	0.97
IGL02417:Cul3	APN	1	80,300,619 (GRCm39)	missense	probably damaging	1.00
IGL02445:Cul3	APN	1	80,281,886 (GRCm39)	missense	possibly damaging	0.74
IGL02601:Cul3	APN	1	80,249,432 (GRCm39)	intron	probably benign
IGL03201:Cul3	APN	1	80,259,144 (GRCm39)	missense	probably damaging	1.00
R0467:Cul3	UTSW	1	80,258,580 (GRCm39)	missense	probably benign	0.01
R0662:Cul3	UTSW	1	80,249,282 (GRCm39)	missense	probably damaging	1.00
R0688:Cul3	UTSW	1	80,249,281 (GRCm39)	missense	possibly damaging	0.63
R0761:Cul3	UTSW	1	80,255,203 (GRCm39)	unclassified	probably benign
R0924:Cul3	UTSW	1	80,267,835 (GRCm39)	missense	probably damaging	0.99
R0930:Cul3	UTSW	1	80,267,835 (GRCm39)	missense	probably damaging	0.99
R0940:Cul3	UTSW	1	80,300,564 (GRCm39)	intron	probably benign
R1117:Cul3	UTSW	1	80,258,641 (GRCm39)	missense	probably damaging	1.00
R1572:Cul3	UTSW	1	80,260,506 (GRCm39)	missense	possibly damaging	0.91
R2384:Cul3	UTSW	1	80,261,406 (GRCm39)	missense	probably damaging	0.99
R3894:Cul3	UTSW	1	80,261,407 (GRCm39)	missense	probably damaging	0.97
R4676:Cul3	UTSW	1	80,249,391 (GRCm39)	missense	probably damaging	1.00
R4893:Cul3	UTSW	1	80,266,567 (GRCm39)	missense	probably damaging	0.98
R4908:Cul3	UTSW	1	80,258,632 (GRCm39)	missense	possibly damaging	0.91
R4910:Cul3	UTSW	1	80,267,806 (GRCm39)	missense	probably benign	0.09
R5173:Cul3	UTSW	1	80,259,133 (GRCm39)	missense	possibly damaging	0.94
R5787:Cul3	UTSW	1	80,260,438 (GRCm39)	missense	probably benign	0.13
R5887:Cul3	UTSW	1	80,254,139 (GRCm39)	missense	possibly damaging	0.94
R6057:Cul3	UTSW	1	80,249,249 (GRCm39)	missense	probably damaging	1.00
R6066:Cul3	UTSW	1	80,261,476 (GRCm39)	missense	probably benign	0.06
R6279:Cul3	UTSW	1	80,264,669 (GRCm39)	missense	probably damaging	0.98
R6300:Cul3	UTSW	1	80,264,669 (GRCm39)	missense	probably damaging	0.98
R6617:Cul3	UTSW	1	80,254,156 (GRCm39)	missense	probably damaging	1.00
R7059:Cul3	UTSW	1	80,254,141 (GRCm39)	missense	probably benign	0.00
R7223:Cul3	UTSW	1	80,264,717 (GRCm39)	missense	probably benign	0.14
R7774:Cul3	UTSW	1	80,247,011 (GRCm39)	missense	probably benign
R7958:Cul3	UTSW	1	80,249,274 (GRCm39)	missense	probably benign	0.11
R9494:Cul3	UTSW	1	80,255,169 (GRCm39)	missense	probably damaging	1.00
Z1088:Cul3	UTSW	1	80,267,808 (GRCm39)	missense	probably benign	0.06

Predicted Primers

PCR Primer
(F):5'- TTTAATATGCCAAGGCTGGTTGAC -3'
(R):5'- GTATATTGGGATCTGGACGAGC -3'

Sequencing Primer
(F):5'- CTGGTTGACAGCCATGAGAG -3'
(R):5'- TCTGGACGAGCCTAGAAATTATG -3'

Posted On

2022-07-18