Mutagenetix > Incidental Mutation

Incidental Mutation 'R9573:Or9a2'

722111

Institutional Source

Beutler Lab

Gene Symbol

Or9a2

Ensembl Gene

ENSMUSG00000045479

Gene Name

olfactory receptor family 9 subfamily A member 2

Synonyms

GA_x6K02T2P3E9-5780974-5781915, Olfr459, MOR120-1

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.200) question?

Stock #

R9573 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

41748287-41749231 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 41748940 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Leucine at position 98 (I98L)

Ref Sequence

ENSEMBL: ENSMUSP00000149928 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000050412] [ENSMUST00000214752] [ENSMUST00000214976]

AlphaFold

Q924H8

Predicted Effect

probably benign
Transcript: ENSMUST00000050412
AA Change: I98L

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000061622
Gene: ENSMUSG00000045479
AA Change: I98L

Domain	Start	End	E-Value	Type
Pfam:7tm_4	30	307	7.9e-46	PFAM
Pfam:7TM_GPCR_Srsx	34	304	1.7e-6	PFAM
Pfam:7tm_1	40	290	6.2e-24	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000214752
AA Change: I98L

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

Predicted Effect

probably benign
Transcript: ENSMUST00000214976
AA Change: I98L

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.9%

Validation Efficiency

MGI Phenotype

FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 67 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Afdn	T	A	17: 14,050,229 (GRCm39)	V472E	probably damaging	Het
Ak3	T	C	19: 29,003,667 (GRCm39)	I170V	probably benign	Het
Ank3	T	A	10: 69,791,977 (GRCm39)	L1058*	probably null	Het
Ankrd60	A	G	2: 173,410,791 (GRCm39)	V243A	possibly damaging	Het
Apol11b	C	T	15: 77,524,771 (GRCm39)	E5K	possibly damaging	Het
Arid3c	T	G	4: 41,726,003 (GRCm39)	E200A	probably benign	Het
Astn2	T	G	4: 65,566,591 (GRCm39)	I856L	probably benign	Het
Bcs1l	C	A	1: 74,629,492 (GRCm39)	R177S	probably damaging	Het
Bin2	A	T	15: 100,560,433 (GRCm39)	F43I	probably damaging	Het
Braf	A	G	6: 39,600,544 (GRCm39)	L691P	probably damaging	Het
Bud23	C	T	5: 135,082,274 (GRCm39)	V266I	possibly damaging	Het
Casp12	A	T	9: 5,354,629 (GRCm39)	I333L	probably benign	Het
Cavin2	T	A	1: 51,328,795 (GRCm39)	I84N	probably damaging	Het
Ccdc168	A	C	1: 44,095,307 (GRCm39)	Y1930*	probably null	Het
Ccdc196	A	T	12: 78,244,098 (GRCm39)	N17I		Het
Cep170b	T	A	12: 112,691,154 (GRCm39)	F24I	probably damaging	Het
Chd9	A	G	8: 91,704,302 (GRCm39)	Y719C	unknown	Het
Commd7	A	G	2: 153,463,981 (GRCm39)	M137T	probably damaging	Het
Dmbt1	G	A	7: 130,657,910 (GRCm39)		probably null	Het
Dnah12	A	C	14: 26,414,619 (GRCm39)	T7P	probably benign	Het
Elapor1	A	T	3: 108,373,094 (GRCm39)	I548N	probably damaging	Het
Endod1	A	T	9: 14,292,247 (GRCm39)	L7Q	probably damaging	Het
Galnt14	C	T	17: 73,802,662 (GRCm39)	V477M	probably damaging	Het
Glis2	C	T	16: 4,429,505 (GRCm39)	R211C	probably damaging	Het
Gm4744	A	T	6: 40,925,497 (GRCm39)	V122D		Het
Gm4952	G	A	19: 12,604,090 (GRCm39)	M167I	probably benign	Het
Hyal4	T	C	6: 24,756,508 (GRCm39)	V242A	possibly damaging	Het
Ift122	T	G	6: 115,857,646 (GRCm39)	S131A	probably benign	Het
Il4ra	T	A	7: 125,169,158 (GRCm39)	S137T	possibly damaging	Het
Lcor	T	A	19: 41,573,471 (GRCm39)	L742Q	probably damaging	Het
Lpin2	A	G	17: 71,538,185 (GRCm39)	K315R	probably benign	Het
Map3k6	T	C	4: 132,979,774 (GRCm39)	Y1258H	probably damaging	Het
Mapk9	A	T	11: 49,769,239 (GRCm39)	K290N	probably damaging	Het
Mfhas1	C	T	8: 36,143,903 (GRCm39)	H1045Y	possibly damaging	Het
Ndufaf7	C	A	17: 79,246,036 (GRCm39)	Q90K	probably damaging	Het
Nlrc3	A	T	16: 3,771,841 (GRCm39)	V157E	probably benign	Het
Npas4	A	G	19: 5,035,837 (GRCm39)	F776L	probably benign	Het
Nuggc	A	C	14: 65,848,603 (GRCm39)	D184A	probably benign	Het
Ogdhl	A	G	14: 32,066,678 (GRCm39)	E795G	probably damaging	Het
Or5a1	A	G	19: 12,097,509 (GRCm39)	I189T	probably damaging	Het
Pcbp1	A	T	6: 86,502,677 (GRCm39)	M74K	possibly damaging	Het
Plk4	A	G	3: 40,763,257 (GRCm39)	D476G	probably benign	Het
Prox2	G	A	12: 85,141,766 (GRCm39)	Q146*	probably null	Het
Rab44	A	T	17: 29,364,277 (GRCm39)	Y617F	unknown	Het
Rabepk	T	C	2: 34,675,627 (GRCm39)	R168G	probably benign	Het
Rbmyf9	T	A	Y: 3,775,370 (GRCm39)	M40K	possibly damaging	Het
Rif1	T	G	2: 52,000,466 (GRCm39)	S1307A	probably benign	Het
Ror2	C	T	13: 53,265,467 (GRCm39)	V542I	probably benign	Het
Rtp1	A	G	16: 23,250,159 (GRCm39)	I175V	possibly damaging	Het
Slc11a2	T	A	15: 100,304,225 (GRCm39)	I158F	probably damaging	Het
Slc24a3	T	G	2: 145,455,548 (GRCm39)	M479R	probably damaging	Het
Slc4a9	T	C	18: 36,668,589 (GRCm39)	F723S	probably damaging	Het
Syne2	C	A	12: 75,927,134 (GRCm39)	N93K	probably damaging	Het
Sytl2	A	G	7: 90,057,599 (GRCm39)	Q846R	probably damaging	Het
Tas2r116	A	C	6: 132,833,140 (GRCm39)	H247P	probably benign	Het
Tcstv3	T	C	13: 120,779,130 (GRCm39)	S10P	probably damaging	Het
Tgm7	T	C	2: 120,934,606 (GRCm39)	N124S	probably benign	Het
Tmem219	A	T	7: 126,490,933 (GRCm39)	Y175N	probably damaging	Het
Tnfrsf18	G	A	4: 156,112,484 (GRCm39)	G114S	possibly damaging	Het
Trim38	G	A	13: 23,966,688 (GRCm39)	C45Y	probably benign	Het
Tshz1	T	C	18: 84,032,404 (GRCm39)	E668G	probably benign	Het
Ubr4	T	A	4: 139,148,450 (GRCm39)	M382K		Het
Vps39	T	C	2: 120,155,179 (GRCm39)	E549G	possibly damaging	Het
Wdr35	G	A	12: 9,078,014 (GRCm39)	G1135D	probably benign	Het
Zbtb46	A	G	2: 181,053,548 (GRCm39)	L388P	probably benign	Het
Zdhhc25	T	A	15: 88,485,307 (GRCm39)	M214K	probably damaging	Het
Zfp735	G	A	11: 73,602,936 (GRCm39)	E627K	possibly damaging	Het

Other mutations in Or9a2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00896:Or9a2	APN	6	41,749,047 (GRCm39)	missense	probably damaging	1.00
IGL01460:Or9a2	APN	6	41,749,216 (GRCm39)	missense	probably benign	0.12
IGL02465:Or9a2	APN	6	41,748,490 (GRCm39)	missense	probably damaging	1.00
R0352:Or9a2	UTSW	6	41,749,058 (GRCm39)	missense	probably damaging	0.99
R0443:Or9a2	UTSW	6	41,748,829 (GRCm39)	missense	possibly damaging	0.75
R0480:Or9a2	UTSW	6	41,749,198 (GRCm39)	missense	probably benign	0.01
R1491:Or9a2	UTSW	6	41,748,456 (GRCm39)	missense	possibly damaging	0.95
R1495:Or9a2	UTSW	6	41,748,837 (GRCm39)	missense	probably damaging	1.00
R2103:Or9a2	UTSW	6	41,748,939 (GRCm39)	missense	probably benign	0.36
R3688:Or9a2	UTSW	6	41,749,160 (GRCm39)	nonsense	probably null
R3910:Or9a2	UTSW	6	41,749,083 (GRCm39)	missense	probably benign	0.00
R4709:Or9a2	UTSW	6	41,748,442 (GRCm39)	missense	probably benign	0.06
R4710:Or9a2	UTSW	6	41,748,442 (GRCm39)	missense	probably benign	0.06
R4960:Or9a2	UTSW	6	41,749,003 (GRCm39)	missense	probably damaging	0.97
R5162:Or9a2	UTSW	6	41,748,706 (GRCm39)	missense	possibly damaging	0.80
R5236:Or9a2	UTSW	6	41,749,045 (GRCm39)	missense	probably benign	0.00
R5441:Or9a2	UTSW	6	41,748,782 (GRCm39)	missense	probably benign	0.00
R7171:Or9a2	UTSW	6	41,748,961 (GRCm39)	missense	probably benign	0.09
R7400:Or9a2	UTSW	6	41,748,678 (GRCm39)	missense	probably damaging	1.00
R8115:Or9a2	UTSW	6	41,748,472 (GRCm39)	missense	probably benign	0.00
R8346:Or9a2	UTSW	6	41,749,057 (GRCm39)	missense	probably damaging	1.00
R8363:Or9a2	UTSW	6	41,748,684 (GRCm39)	missense	probably benign	0.06
R9700:Or9a2	UTSW	6	41,749,076 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- TGGCCAGATTTCAGAAAGGAACC -3'
(R):5'- TTTCCCTGGATCCCAAGAGC -3'

Sequencing Primer
(F):5'- GATTTCAGAAAGGAACCCAAACATC -3'
(R):5'- CTATTCAGTGACACTGCTGGGAAAC -3'

Posted On

2022-08-09