Mutagenetix > Incidental Mutation

Incidental Mutation 'R9577:Tm9sf4'

722342

Institutional Source

Beutler Lab

Gene Symbol

Tm9sf4

Ensembl Gene

ENSMUSG00000068040

Gene Name

transmembrane 9 superfamily member 4

Synonyms

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9577 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

153003223-153052386 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 153037294 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Serine at position 385 (F385S)

Ref Sequence

ENSEMBL: ENSMUSP00000086422 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000089027]

AlphaFold

Q8BH24

Predicted Effect

probably benign
Transcript: ENSMUST00000089027
AA Change: F385S

PolyPhen 2 Score 0.297 (Sensitivity: 0.91; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000086422
Gene: ENSMUSG00000068040
AA Change: F385S

Domain	Start	End	E-Value	Type
signal peptide	1	23	N/A	INTRINSIC
Pfam:EMP70	55	600	5.3e-203	PFAM
transmembrane domain	605	627	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Homozygous mutants exhibit abnormal hair follicles and sebaceous glands, vertebrae and rib abnormalities, and increased circulating cholesterol, calcium, albumin, and total protein levels. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2700062C07Rik	G	T	18: 24,608,663 (GRCm39)	A128S	probably benign	Het
Abca14	T	C	7: 119,810,768 (GRCm39)	Y116H	probably benign	Het
Aipl1	C	T	11: 71,928,253 (GRCm39)	G11D	probably damaging	Het
Ankar	C	A	1: 72,721,067 (GRCm39)	V464L	probably benign	Het
Arap2	A	T	5: 62,769,060 (GRCm39)	I1526N	probably damaging	Het
Atad5	T	A	11: 80,004,996 (GRCm39)	N1144K	probably damaging	Het
B3gntl1	T	C	11: 121,515,040 (GRCm39)	T243A	probably benign	Het
Baz2b	T	C	2: 59,809,031 (GRCm39)	T73A	probably benign	Het
Bnip5	A	T	17: 29,128,382 (GRCm39)	I177K	probably benign	Het
Brms1l	A	G	12: 55,906,876 (GRCm39)	S148G	probably damaging	Het
Btnl1	A	G	17: 34,603,335 (GRCm39)	D332G	probably benign	Het
Card9	T	A	2: 26,242,344 (GRCm39)	T531S	probably damaging	Het
Ccdc71	C	T	9: 108,340,472 (GRCm39)	A95V	possibly damaging	Het
Cdh23	A	G	10: 60,146,895 (GRCm39)	V2787A	probably damaging	Het
Chd7	A	G	4: 8,752,964 (GRCm39)	E487G	unknown	Het
Col22a1	T	C	15: 71,837,595 (GRCm39)	K505R	probably damaging	Het
Dennd1b	T	C	1: 139,018,196 (GRCm39)	V180A		Het
Dmxl2	A	G	9: 54,323,664 (GRCm39)	V1066A	unknown	Het
Dnah9	C	T	11: 65,867,347 (GRCm39)	V2744M	probably benign	Het
Fam83e	G	T	7: 45,376,439 (GRCm39)	R384L	possibly damaging	Het
Fbxo42	T	A	4: 140,907,743 (GRCm39)	Y134*	probably null	Het
Fmn1	C	T	2: 113,194,470 (GRCm39)	P57S	unknown	Het
Gm6309	T	C	5: 146,105,700 (GRCm39)	R155G	possibly damaging	Het
Gnpda1	T	C	18: 38,463,605 (GRCm39)	T235A	probably benign	Het
Gsdmc2	T	A	15: 63,696,906 (GRCm39)	I422F	probably damaging	Het
Itfg1	A	G	8: 86,502,798 (GRCm39)	V256A	probably benign	Het
Kcnk2	CAAA	CAA	1: 188,988,891 (GRCm39)		probably null	Het
Kif14	T	C	1: 136,399,138 (GRCm39)	V433A	probably benign	Het
Kif3a	T	C	11: 53,475,231 (GRCm39)	F363S	probably damaging	Het
Lman2l	T	C	1: 36,467,490 (GRCm39)	D186G	probably damaging	Het
Lmntd2	T	C	7: 140,790,990 (GRCm39)	T448A	probably benign	Het
Magi2	C	T	5: 20,814,282 (GRCm39)	A898V	probably damaging	Het
Mri1	A	G	8: 84,982,929 (GRCm39)	V164A	probably damaging	Het
Myb	C	T	10: 21,030,612 (GRCm39)	D62N	probably benign	Het
Nxpe2	G	A	9: 48,237,632 (GRCm39)	R208*	probably null	Het
Or1j1	C	A	2: 36,702,567 (GRCm39)	C179F	probably damaging	Het
Or8g28	A	G	9: 39,169,737 (GRCm39)	V77A	possibly damaging	Het
Pcdha12	C	T	18: 37,155,126 (GRCm39)	A615V	probably benign	Het
Pou4f3	C	G	18: 42,528,563 (GRCm39)	P169A	probably benign	Het
Pramel52-ps	A	T	5: 94,531,805 (GRCm39)	R230*	probably null	Het
Prss36	T	C	7: 127,533,673 (GRCm39)	I556V	probably benign	Het
Psg23	A	T	7: 18,346,067 (GRCm39)	D209E	probably benign	Het
Ptpn13	C	A	5: 103,676,675 (GRCm39)	D679E	probably damaging	Het
Ptprz1	G	T	6: 23,002,202 (GRCm39)	D1431Y	probably damaging	Het
Sdccag8	T	A	1: 176,658,629 (GRCm39)	L143M	probably damaging	Het
Shroom1	A	G	11: 53,357,612 (GRCm39)	Q721R	probably benign	Het
Spdye4b	A	G	5: 143,182,055 (GRCm39)	M118V	probably damaging	Het
Tbc1d1	T	A	5: 64,473,699 (GRCm39)	S741T	possibly damaging	Het
Tbx18	A	G	9: 87,611,512 (GRCm39)		probably null	Het
Trpm4	A	T	7: 44,954,432 (GRCm39)	L1133*	probably null	Het
Trpm5	A	G	7: 142,633,131 (GRCm39)		probably null	Het
Ube4b	A	G	4: 149,468,231 (GRCm39)	S182P	possibly damaging	Het
Ugt2b36	T	C	5: 87,228,784 (GRCm39)	T420A	probably benign	Het
Vipr1	G	A	9: 121,471,993 (GRCm39)		probably null	Het
Zc3h6	T	A	2: 128,858,102 (GRCm39)	I711K		Het
Zer1	T	C	2: 29,991,050 (GRCm39)	Y726C	probably damaging	Het

Other mutations in Tm9sf4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00469:Tm9sf4	APN	2	153,044,275 (GRCm39)	missense	probably damaging	1.00
IGL02218:Tm9sf4	APN	2	153,046,536 (GRCm39)	missense	probably benign	0.00
IGL02354:Tm9sf4	APN	2	153,029,570 (GRCm39)	missense	probably benign
IGL02361:Tm9sf4	APN	2	153,029,570 (GRCm39)	missense	probably benign
IGL03047:Tm9sf4	UTSW	2	153,003,326 (GRCm39)	utr 5 prime	probably benign
R0079:Tm9sf4	UTSW	2	153,033,065 (GRCm39)	missense	probably damaging	1.00
R0147:Tm9sf4	UTSW	2	153,037,233 (GRCm39)	missense	probably benign	0.01
R0650:Tm9sf4	UTSW	2	153,029,285 (GRCm39)	missense	probably benign	0.00
R0729:Tm9sf4	UTSW	2	153,033,065 (GRCm39)	missense	probably damaging	1.00
R0739:Tm9sf4	UTSW	2	153,045,734 (GRCm39)	missense	probably damaging	1.00
R1695:Tm9sf4	UTSW	2	153,032,832 (GRCm39)	missense	probably benign	0.00
R2321:Tm9sf4	UTSW	2	153,046,506 (GRCm39)	missense	probably damaging	1.00
R3608:Tm9sf4	UTSW	2	153,020,897 (GRCm39)	missense	probably benign
R4031:Tm9sf4	UTSW	2	153,040,264 (GRCm39)	splice site	probably benign
R4668:Tm9sf4	UTSW	2	153,029,228 (GRCm39)	missense	probably damaging	1.00
R4669:Tm9sf4	UTSW	2	153,029,228 (GRCm39)	missense	probably damaging	1.00
R5318:Tm9sf4	UTSW	2	153,029,576 (GRCm39)	missense	probably benign
R5580:Tm9sf4	UTSW	2	153,024,350 (GRCm39)	missense	probably damaging	1.00
R5705:Tm9sf4	UTSW	2	153,024,378 (GRCm39)	missense	probably benign	0.00
R5870:Tm9sf4	UTSW	2	153,036,201 (GRCm39)	missense	probably damaging	1.00
R5996:Tm9sf4	UTSW	2	153,037,491 (GRCm39)	splice site	probably null
R6115:Tm9sf4	UTSW	2	153,024,409 (GRCm39)	critical splice donor site	probably null
R7448:Tm9sf4	UTSW	2	153,036,267 (GRCm39)	missense	probably benign	0.04
R7740:Tm9sf4	UTSW	2	153,050,663 (GRCm39)	missense	probably damaging	1.00
R7848:Tm9sf4	UTSW	2	153,044,275 (GRCm39)	missense	probably damaging	1.00
R8426:Tm9sf4	UTSW	2	153,045,736 (GRCm39)	missense	probably damaging	1.00
R8726:Tm9sf4	UTSW	2	153,040,295 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- AGCTACAACCCAGTCTTTCCG -3'
(R):5'- ACCTATGGCCTTTTAGAGTTCGG -3'

Sequencing Primer
(F):5'- CCCAGTCTTTCCGTATAAAGAGC -3'
(R):5'- TTAGAGTTCGGTAGAGACGGCC -3'

Posted On

2022-08-09