Mutagenetix > Incidental Mutation

Incidental Mutation 'R9581:Chia1'

722528

Institutional Source

Beutler Lab

Gene Symbol

Chia1

Ensembl Gene

ENSMUSG00000062778

Gene Name

chitinase, acidic 1

Synonyms

AMCase, 2200003E03Rik, Chia, YNL

MMRRC Submission

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.475) question?

Stock #

R9581 (G1)

Quality Score

207.009

Status

Not validated

Chromosome

Chromosomal Location

106020698-106039434 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 106035879 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Histidine at position 240 (Y240H)

Ref Sequence

ENSEMBL: ENSMUSP00000078134 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000079132] [ENSMUST00000139086]

AlphaFold

Q91XA9

Predicted Effect

possibly damaging
Transcript: ENSMUST00000079132
AA Change: Y240H

PolyPhen 2 Score 0.501 (Sensitivity: 0.88; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000078134
Gene: ENSMUSG00000062778
AA Change: Y240H

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Glyco_18	22	365	1.82e-161	SMART
ChtBD2	425	473	2.06e-6	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000139086
AA Change: Y180H

PolyPhen 2 Score 0.501 (Sensitivity: 0.88; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000121967
Gene: ENSMUSG00000062778
AA Change: Y180H

Domain	Start	End	E-Value	Type
Glyco_18	3	215	2.24e-47	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene degrades chitin, which is found in the cell wall of most fungi as well as in arthropods and some nematodes. The encoded protein can also stimulate interleukin 13 expression, and variations in this gene can lead to asthma susceptibility. Several transcript variants encoding a few different isoforms have been found for this gene. [provided by RefSeq, Apr 2012]

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb1a	T	G	5: 8,790,428 (GRCm39)	I1097R	possibly damaging	Het
Abcd4	A	G	12: 84,650,762 (GRCm39)	S533P	probably damaging	Het
Adat1	C	T	8: 112,705,946 (GRCm39)	V387I	probably benign	Het
Aff3	T	A	1: 38,249,266 (GRCm39)	T614S	probably benign	Het
Aldh1a1	T	A	19: 20,597,417 (GRCm39)	C133S	probably benign	Het
Ankrd12	A	G	17: 66,290,415 (GRCm39)	S1673P	probably damaging	Het
Aox1	T	A	1: 58,370,055 (GRCm39)		probably null	Het
Arsi	A	G	18: 61,050,160 (GRCm39)	T348A	probably damaging	Het
Baz2b	T	C	2: 59,799,300 (GRCm39)	R275G	probably benign	Het
Cdh2	T	A	18: 16,803,112 (GRCm39)		probably benign	Het
Cela1	C	T	15: 100,573,261 (GRCm39)	A243T	probably benign	Het
Cep192	G	T	18: 67,980,465 (GRCm39)	V1409F	probably damaging	Het
Dact1	A	T	12: 71,365,619 (GRCm39)	K763M	probably damaging	Het
Dip2b	C	A	15: 100,079,255 (GRCm39)	N822K	probably damaging	Het
Dnah12	C	T	14: 26,491,985 (GRCm39)	T1140I	probably damaging	Het
Drc7	T	C	8: 95,785,782 (GRCm39)	S213P	probably damaging	Het
Ell2	A	G	13: 75,912,148 (GRCm39)	D478G	probably benign	Het
Evpl	G	A	11: 116,120,660 (GRCm39)	T483M	probably benign	Het
Farp1	A	T	14: 121,480,841 (GRCm39)	E414V	probably benign	Het
Fbxl17	A	G	17: 63,806,525 (GRCm39)	V163A	probably benign	Het
Foxn3	C	T	12: 99,163,035 (GRCm39)	E289K	probably damaging	Het
Fscb	T	A	12: 64,521,122 (GRCm39)	I115F	probably benign	Het
Gm14496	A	T	2: 181,642,047 (GRCm39)	T573S	probably benign	Het
Golga1	G	T	2: 38,909,573 (GRCm39)	D677E	probably damaging	Het
Herc6	A	T	6: 57,635,101 (GRCm39)	K772N	probably damaging	Het
Ikbkb	T	C	8: 23,155,575 (GRCm39)	D639G	probably damaging	Het
Lrrc61	G	A	6: 48,545,653 (GRCm39)	V159I	possibly damaging	Het
Ltbp2	G	A	12: 84,837,864 (GRCm39)	P1192L	probably benign	Het
Mib1	A	G	18: 10,775,701 (GRCm39)	D551G	possibly damaging	Het
Muc5ac	G	T	7: 141,363,799 (GRCm39)	R2370L	unknown	Het
Mybpc3	A	G	2: 90,949,616 (GRCm39)	D53G	probably benign	Het
Myo9b	C	T	8: 71,812,543 (GRCm39)	P2105S	probably benign	Het
Naip5	G	T	13: 100,351,194 (GRCm39)	H1271Q	probably benign	Het
Nicn1	C	T	9: 108,171,708 (GRCm39)	R163C	possibly damaging	Het
Nmt2	T	C	2: 3,317,212 (GRCm39)	V340A	possibly damaging	Het
Nos1	A	G	5: 118,043,459 (GRCm39)	E578G	probably damaging	Het
Nox3	G	A	17: 3,700,328 (GRCm39)	R462W	possibly damaging	Het
Or10h28	C	A	17: 33,487,995 (GRCm39)	A99D	probably damaging	Het
Or52a20	A	G	7: 103,365,788 (GRCm39)		probably benign	Het
Pcdhgc4	A	G	18: 37,950,189 (GRCm39)	Q535R	probably benign	Het
Pcsk5	T	C	19: 17,432,196 (GRCm39)	D1473G	probably benign	Het
Pdilt	A	T	7: 119,099,633 (GRCm39)	F212I	probably damaging	Het
Ptk2b	A	T	14: 66,450,789 (GRCm39)	V59D	probably damaging	Het
Ptprf	T	C	4: 118,092,257 (GRCm39)	D571G	probably benign	Het
Ptprq	A	T	10: 107,547,771 (GRCm39)	V209E	possibly damaging	Het
Rsf1	GGCGGCGGC	GGCGGCGGCCGCGGCGGC	7: 97,229,125 (GRCm39)		probably benign	Het
Schip1	TCTGGCC	TC	3: 68,525,060 (GRCm39)		probably null	Het
Sec16a	C	T	2: 26,328,647 (GRCm39)	V142I		Het
Slamf6	A	G	1: 171,761,897 (GRCm39)	Y106C		Het
Strc	A	G	2: 121,207,928 (GRCm39)	V481A	probably damaging	Het
Sulf1	A	T	1: 12,875,478 (GRCm39)	I163F	possibly damaging	Het
Tjp1	A	G	7: 64,949,472 (GRCm39)	S1637P	probably damaging	Het
Tlr9	A	G	9: 106,101,510 (GRCm39)	E267G	probably damaging	Het
Tmem117	T	A	15: 94,992,268 (GRCm39)	F309L	probably benign	Het
Tmtc4	T	C	14: 123,187,998 (GRCm39)	N196S	probably benign	Het
Trim16	T	A	11: 62,727,557 (GRCm39)	I293K	probably damaging	Het
Trim7	T	C	11: 48,738,887 (GRCm39)	V95A	probably damaging	Het
Ttll6	A	T	11: 96,049,572 (GRCm39)	K763N	probably benign	Het
Tut1	T	C	19: 8,941,981 (GRCm39)	S483P	probably benign	Het
Zfp101	A	T	17: 33,605,730 (GRCm39)	L26*	probably null	Het
Zfp106	C	T	2: 120,365,807 (GRCm39)	R155K		Het
Zfp518a	T	A	19: 40,900,156 (GRCm39)	D28E	probably damaging	Het
Zfp90	T	A	8: 107,151,714 (GRCm39)	S476T	probably benign	Het

Other mutations in Chia1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01917:Chia1	APN	3	106,035,536 (GRCm39)	missense	probably damaging	1.00
Pet	UTSW	3	106,036,338 (GRCm39)	critical splice donor site	probably null
R0004:Chia1	UTSW	3	106,036,325 (GRCm39)	missense	probably damaging	1.00
R0011:Chia1	UTSW	3	106,038,290 (GRCm39)	unclassified	probably benign
R0047:Chia1	UTSW	3	106,022,573 (GRCm39)	missense	probably damaging	0.99
R0345:Chia1	UTSW	3	106,029,755 (GRCm39)	missense	probably damaging	1.00
R0456:Chia1	UTSW	3	106,035,795 (GRCm39)	missense	probably damaging	1.00
R0638:Chia1	UTSW	3	106,035,753 (GRCm39)	splice site	probably benign
R0847:Chia1	UTSW	3	106,039,253 (GRCm39)	missense	probably benign	0.12
R1055:Chia1	UTSW	3	106,038,199 (GRCm39)	missense	probably damaging	1.00
R1401:Chia1	UTSW	3	106,036,255 (GRCm39)	missense	probably benign	0.00
R1513:Chia1	UTSW	3	106,039,220 (GRCm39)	missense	probably benign	0.44
R1846:Chia1	UTSW	3	106,038,181 (GRCm39)	missense	probably damaging	0.98
R1882:Chia1	UTSW	3	106,035,790 (GRCm39)	missense	probably damaging	1.00
R1914:Chia1	UTSW	3	106,035,875 (GRCm39)	missense	probably benign	0.06
R1915:Chia1	UTSW	3	106,035,875 (GRCm39)	missense	probably benign	0.06
R2107:Chia1	UTSW	3	106,036,156 (GRCm39)	nonsense	probably null
R3969:Chia1	UTSW	3	106,028,951 (GRCm39)	splice site	probably null
R3970:Chia1	UTSW	3	106,028,951 (GRCm39)	splice site	probably null
R4112:Chia1	UTSW	3	106,035,844 (GRCm39)	missense	probably damaging	1.00
R4432:Chia1	UTSW	3	106,022,641 (GRCm39)	missense	probably benign	0.03
R4625:Chia1	UTSW	3	106,036,256 (GRCm39)	missense	probably benign	0.00
R4748:Chia1	UTSW	3	106,029,765 (GRCm39)	missense	probably damaging	1.00
R5805:Chia1	UTSW	3	106,035,792 (GRCm39)	missense	probably damaging	0.98
R5906:Chia1	UTSW	3	106,039,304 (GRCm39)	missense	probably benign	0.01
R6173:Chia1	UTSW	3	106,036,338 (GRCm39)	critical splice donor site	probably null
R6214:Chia1	UTSW	3	106,029,761 (GRCm39)	missense	probably damaging	1.00
R6215:Chia1	UTSW	3	106,029,761 (GRCm39)	missense	probably damaging	1.00
R6225:Chia1	UTSW	3	106,038,213 (GRCm39)	missense	possibly damaging	0.66
R6383:Chia1	UTSW	3	106,039,127 (GRCm39)	missense	probably benign
R6423:Chia1	UTSW	3	106,036,304 (GRCm39)	missense	possibly damaging	0.60
R6668:Chia1	UTSW	3	106,038,264 (GRCm39)	missense	probably damaging	1.00
R6764:Chia1	UTSW	3	106,038,056 (GRCm39)	critical splice donor site	probably null
R7030:Chia1	UTSW	3	106,022,641 (GRCm39)	missense	probably damaging	1.00
R7221:Chia1	UTSW	3	106,039,236 (GRCm39)	missense	probably damaging	1.00
R7265:Chia1	UTSW	3	106,036,239 (GRCm39)	missense	probably damaging	1.00
R7343:Chia1	UTSW	3	106,039,331 (GRCm39)	makesense	probably null
R7420:Chia1	UTSW	3	106,037,980 (GRCm39)	missense	probably benign	0.00
R8933:Chia1	UTSW	3	106,036,333 (GRCm39)	nonsense	probably null
R9031:Chia1	UTSW	3	106,035,777 (GRCm39)	missense	probably benign	0.00
R9289:Chia1	UTSW	3	106,022,502 (GRCm39)	start gained	probably benign
R9307:Chia1	UTSW	3	106,035,991 (GRCm39)	intron	probably benign
R9681:Chia1	UTSW	3	106,037,996 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CAAAGACCTTGTCTGCACACTTG -3'
(R):5'- GTCTGTGTTAGGATCCAGGC -3'

Sequencing Primer
(F):5'- CACTTGCTGTGGAAAAGGCATC -3'
(R):5'- AGGATCCAGGCAAATTATATTGTTC -3'

Posted On

2022-08-09