Mutagenetix > Incidental Mutation

Incidental Mutation 'R9593:Mtrf1'

723118

Institutional Source

Beutler Lab

Gene Symbol

Mtrf1

Ensembl Gene

ENSMUSG00000022022

Gene Name

mitochondrial translational release factor 1

Synonyms

A830062K05Rik

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.088) question?

Stock #

R9593 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

79635212-79661027 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 79656664 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Histidine at position 389 (Y389H)

Ref Sequence

ENSEMBL: ENSMUSP00000022600 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022600]

AlphaFold

Q8K126

Predicted Effect

probably damaging
Transcript: ENSMUST00000022600
AA Change: Y389H

PolyPhen 2 Score 0.985 (Sensitivity: 0.74; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000022600
Gene: ENSMUSG00000022022
AA Change: Y389H

Domain	Start	End	E-Value	Type
low complexity region	104	119	N/A	INTRINSIC
low complexity region	122	133	N/A	INTRINSIC
PCRF	139	255	5.96e-27	SMART
Pfam:RF-1	290	400	2.6e-41	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene was determined by in silico methods to be a mitochondrial protein with similarity to the peptide chain release factors (RFs) discovered in bacteria and yeast. The peptide chain release factors direct the termination of translation in response to the peptide chain termination codons. Initially thought to have a role in the termination of mitochondria protein synthesis, a recent publication found no mitochondrial translation release functionality. Multiple alternatively spliced transcript variants have been suggested by mRNA and EST data; however, their full-length natures are not clear. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A130010J15Rik	T	A	1: 192,857,087 (GRCm39)	D146E	probably benign	Het
Acaca	C	T	11: 84,271,339 (GRCm39)	Q2058*	probably null	Het
Adam39	T	A	8: 41,279,744 (GRCm39)	C712S	possibly damaging	Het
Aipl1	T	C	11: 71,921,161 (GRCm39)	E219G	probably benign	Het
Ankrd24	A	G	10: 81,475,898 (GRCm39)	R301G	unknown	Het
Arhgef17	A	G	7: 100,532,009 (GRCm39)	F272L	probably damaging	Het
B3galt2	T	A	1: 143,522,604 (GRCm39)	Y247N	probably damaging	Het
Bltp1	T	C	3: 37,002,090 (GRCm39)	V1345A	probably damaging	Het
Bnip3l	G	A	14: 67,246,214 (GRCm39)	P7L	possibly damaging	Het
Cat	T	C	2: 103,285,433 (GRCm39)	E503G	probably benign	Het
Cemip2	T	C	19: 21,803,453 (GRCm39)	S829P	probably damaging	Het
Coro1b	T	A	19: 4,199,497 (GRCm39)	V52E	probably damaging	Het
D6Ertd527e	G	C	6: 87,088,839 (GRCm39)	S334T	unknown	Het
Dip2c	T	A	13: 9,704,683 (GRCm39)	M1344K	possibly damaging	Het
Dnah5	A	G	15: 28,236,774 (GRCm39)	I367V	probably benign	Het
Dock2	T	C	11: 34,178,607 (GRCm39)	T1807A	probably benign	Het
Dusp10	T	A	1: 183,806,643 (GRCm39)	F459I	probably damaging	Het
Elac1	A	T	18: 73,872,089 (GRCm39)	L302Q	probably benign	Het
Entrep3	T	A	3: 89,091,199 (GRCm39)	S57T	probably benign	Het
Fdx2	A	T	9: 20,979,097 (GRCm39)	Y165N	probably damaging	Het
Gabra2	C	T	5: 71,165,353 (GRCm39)	V206I	possibly damaging	Het
Gabrg1	T	C	5: 70,939,808 (GRCm39)	E108G	probably damaging	Het
Gm29394	A	G	15: 57,932,722 (GRCm39)	L5P	probably benign	Het
Gnb1l	C	T	16: 18,362,914 (GRCm39)	P101S	probably benign	Het
Hectd4	C	A	5: 121,424,844 (GRCm39)	S749*	probably null	Het
Hmcn2	A	G	2: 31,244,742 (GRCm39)	Y733C	probably damaging	Het
Inafm1	G	A	7: 16,007,059 (GRCm39)	L53F	probably damaging	Het
Iqgap3	G	A	3: 88,011,657 (GRCm39)	R814H	probably damaging	Het
Map3k19	A	G	1: 127,778,163 (GRCm39)	C21R	probably benign	Het
Maz	A	G	7: 126,624,924 (GRCm39)	F199L	probably damaging	Het
Mis18bp1	A	G	12: 65,187,628 (GRCm39)	I825T	probably damaging	Het
Mpp3	T	A	11: 101,907,506 (GRCm39)	T211S	possibly damaging	Het
Myo3b	G	A	2: 70,075,648 (GRCm39)	G579R	probably benign	Het
Nlrp4e	T	C	7: 23,020,197 (GRCm39)	V228A	probably benign	Het
Npepps	T	A	11: 97,149,179 (GRCm39)		probably null	Het
Ntng1	A	G	3: 109,842,224 (GRCm39)	L183P	probably damaging	Het
Or8c16	A	G	9: 38,130,868 (GRCm39)	T247A	probably benign	Het
Pcdha4	A	C	18: 37,086,740 (GRCm39)	I308L	probably benign	Het
Pear1	G	T	3: 87,658,480 (GRCm39)	Q964K	probably benign	Het
Plekhg2	A	T	7: 28,059,710 (GRCm39)	D1182E	possibly damaging	Het
Prr27	C	A	5: 87,990,994 (GRCm39)	P202Q	probably benign	Het
Ptpn13	T	A	5: 103,674,998 (GRCm39)	D658E	possibly damaging	Het
Ptprq	T	C	10: 107,524,254 (GRCm39)	Y493C	possibly damaging	Het
Rnd1	A	G	15: 98,570,526 (GRCm39)	W107R	probably damaging	Het
Scn5a	G	A	9: 119,315,839 (GRCm39)	T1623M	probably damaging	Het
Sec23b	T	C	2: 144,410,564 (GRCm39)	I288T	probably benign	Het
Slfn14	T	A	11: 83,174,733 (GRCm39)	H86L	probably benign	Het
Smchd1	G	A	17: 71,701,828 (GRCm39)	H1055Y	probably damaging	Het
Sox13	G	A	1: 133,316,214 (GRCm39)	P243S	probably damaging	Het
St3gal6	C	A	16: 58,305,136 (GRCm39)	E109*	probably null	Het
Traf4	T	C	11: 78,056,253 (GRCm39)	D5G	possibly damaging	Het
Trank1	G	T	9: 111,191,365 (GRCm39)	C458F	probably benign	Het
Ttc41	T	C	10: 86,549,049 (GRCm39)	F81S	probably benign	Het
Tulp1	C	T	17: 28,572,802 (GRCm39)	W451*	probably null	Het
Tyms	T	C	5: 30,269,110 (GRCm39)	I171V		Het
Vmn2r115	T	A	17: 23,578,184 (GRCm39)	N552K	probably damaging	Het
Zfp710	T	A	7: 79,730,909 (GRCm39)	S29T	possibly damaging	Het

Other mutations in Mtrf1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01356:Mtrf1	APN	14	79,660,865 (GRCm39)	missense	probably benign	0.10
IGL01478:Mtrf1	APN	14	79,640,360 (GRCm39)	splice site	probably benign
IGL01866:Mtrf1	APN	14	79,638,948 (GRCm39)	missense	probably benign
IGL02290:Mtrf1	APN	14	79,639,251 (GRCm39)	nonsense	probably null
IGL02929:Mtrf1	APN	14	79,640,273 (GRCm39)	missense	probably benign	0.00
IGL03342:Mtrf1	APN	14	79,653,312 (GRCm39)	splice site	probably null
IGL03342:Mtrf1	APN	14	79,653,311 (GRCm39)	splice site	probably benign
IGL03342:Mtrf1	APN	14	79,653,420 (GRCm39)	missense	possibly damaging	0.80
R0212:Mtrf1	UTSW	14	79,656,719 (GRCm39)	missense	probably benign	0.02
R0560:Mtrf1	UTSW	14	79,644,290 (GRCm39)	missense	probably damaging	1.00
R0604:Mtrf1	UTSW	14	79,653,327 (GRCm39)	missense	possibly damaging	0.92
R0669:Mtrf1	UTSW	14	79,656,708 (GRCm39)	nonsense	probably null
R0981:Mtrf1	UTSW	14	79,639,030 (GRCm39)	missense	probably benign	0.04
R1837:Mtrf1	UTSW	14	79,639,273 (GRCm39)	missense	possibly damaging	0.89
R1969:Mtrf1	UTSW	14	79,639,111 (GRCm39)	missense	probably damaging	1.00
R3883:Mtrf1	UTSW	14	79,656,707 (GRCm39)	missense	probably damaging	1.00
R4739:Mtrf1	UTSW	14	79,650,520 (GRCm39)	missense	probably damaging	1.00
R4748:Mtrf1	UTSW	14	79,649,090 (GRCm39)	missense	probably damaging	1.00
R4780:Mtrf1	UTSW	14	79,639,128 (GRCm39)	missense	probably benign	0.02
R4965:Mtrf1	UTSW	14	79,644,027 (GRCm39)	missense	probably benign
R5616:Mtrf1	UTSW	14	79,638,885 (GRCm39)	missense	possibly damaging	0.68
R6530:Mtrf1	UTSW	14	79,640,331 (GRCm39)	missense	possibly damaging	0.89
R6776:Mtrf1	UTSW	14	79,650,521 (GRCm39)	missense	probably damaging	1.00
R7095:Mtrf1	UTSW	14	79,660,931 (GRCm39)	frame shift	probably null
R7182:Mtrf1	UTSW	14	79,660,904 (GRCm39)	missense	possibly damaging	0.60
R7254:Mtrf1	UTSW	14	79,660,931 (GRCm39)	frame shift	probably null
R7871:Mtrf1	UTSW	14	79,644,378 (GRCm39)	missense	probably benign	0.19
R8249:Mtrf1	UTSW	14	79,638,919 (GRCm39)	missense	probably benign	0.23

Predicted Primers

PCR Primer
(F):5'- GCAAAGTTCCTTTCCCAACC -3'
(R):5'- CCTGCAGCAACATTTAGGGC -3'

Sequencing Primer
(F):5'- CCCAAACCTGCCTTAAAATATTCTTC -3'
(R):5'- GCTAAGAGCAGCTTCTACCTG -3'

Posted On

2022-08-09