Mutagenetix > Incidental Mutation

Incidental Mutation 'R9598:Ddx19b'

723396

Institutional Source

Beutler Lab

Gene Symbol

Ddx19b

Ensembl Gene

ENSMUSG00000033658

Gene Name

DEAD box helicase 19b

Synonyms

4921519L13Rik, DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b, 2810457M08Rik

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9598 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

111729820-111758383 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 111747673 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 87 (D87G)

Ref Sequence

ENSEMBL: ENSMUSP00000066806 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000040241] [ENSMUST00000065784]

AlphaFold

Q8BZY3

Predicted Effect

probably benign
Transcript: ENSMUST00000040241
AA Change: D72G

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000038551
Gene: ENSMUSG00000033658
AA Change: D72G

Domain	Start	End	E-Value	Type
Blast:DEXDc	5	44	1e-12	BLAST
low complexity region	45	55	N/A	INTRINSIC
Blast:DEXDc	57	99	4e-11	BLAST
DEXDc	111	310	2.94e-42	SMART
HELICc	347	434	2.59e-29	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000065784
AA Change: D87G

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000066806
Gene: ENSMUSG00000033658
AA Change: D87G

Domain	Start	End	E-Value	Type
low complexity region	12	25	N/A	INTRINSIC
low complexity region	60	70	N/A	INTRINSIC
Blast:DEXDc	72	114	5e-11	BLAST
DEXDc	126	325	2.94e-42	SMART
HELICc	362	449	2.59e-29	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. This gene encodes a DEAD box protein, which exhibits RNA-dependent ATPase and ATP-dependent RNA-unwinding activities. This protein is recruited to the cytoplasmic fibrils of the nuclear pore complex, where it participates in the export of mRNA from the nucleus. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921539E11Rik	T	C	4: 103,088,604 (GRCm39)	I302V	probably benign	Het
Ackr2	A	C	9: 121,737,657 (GRCm39)	T11P	possibly damaging	Het
Ahnak	A	G	19: 8,981,149 (GRCm39)	N811S	probably benign	Het
Atm	T	C	9: 53,431,381 (GRCm39)	I326V	probably benign	Het
Ccn4	T	A	15: 66,784,764 (GRCm39)	C146S	possibly damaging	Het
Cdh23	A	T	10: 60,214,574 (GRCm39)	F1480L	probably benign	Het
Celsr2	T	C	3: 108,322,578 (GRCm39)	E78G	possibly damaging	Het
Ces1f	A	T	8: 93,983,494 (GRCm39)	N504K	probably benign	Het
Chrna4	G	A	2: 180,679,264 (GRCm39)	S61L	probably damaging	Het
Clcn3	G	T	8: 61,366,061 (GRCm39)	T864K	unknown	Het
Cym	A	C	3: 107,126,941 (GRCm39)	D71E	possibly damaging	Het
Dnah7b	T	C	1: 46,292,621 (GRCm39)	V3002A	possibly damaging	Het
Dnmt3a	G	A	12: 3,946,997 (GRCm39)	G408S	probably benign	Het
Dock10	A	T	1: 80,625,939 (GRCm39)	D66E	probably benign	Het
Dsg3	A	G	18: 20,672,789 (GRCm39)	D820G	probably damaging	Het
Dst	G	A	1: 34,153,014 (GRCm39)	V92I	possibly damaging	Het
Dusp16	T	A	6: 134,695,185 (GRCm39)	T549S	probably benign	Het
Ephx1	T	A	1: 180,827,381 (GRCm39)	K91*	probably null	Het
Flii	A	G	11: 60,617,991 (GRCm39)	F9L	probably benign	Het
Fmn2	T	C	1: 174,436,308 (GRCm39)	S760P	unknown	Het
Fmnl3	A	T	15: 99,223,210 (GRCm39)	V378E	probably damaging	Het
Gbp4	A	G	5: 105,284,740 (GRCm39)	S50P	probably damaging	Het
Glra3	G	T	8: 56,393,718 (GRCm39)		probably benign	Het
Gm10188	T	C	1: 132,157,033 (GRCm39)	D111G	unknown	Het
Gnptab	A	T	10: 88,247,876 (GRCm39)	E101V	probably damaging	Het
Hacl1	C	A	14: 31,332,197 (GRCm39)	M525I	probably benign	Het
Hid1	T	A	11: 115,239,738 (GRCm39)	T731S	probably damaging	Het
Ifi203	T	C	1: 173,751,522 (GRCm39)	Y847C	probably damaging	Het
Igfbpl1	C	A	4: 45,815,472 (GRCm39)	L221F	probably null	Het
Ighv1-12	A	G	12: 114,579,757 (GRCm39)	Y22H	probably benign	Het
Inpp5f	A	C	7: 128,278,515 (GRCm39)	D435A	possibly damaging	Het
L3mbtl4	T	A	17: 68,866,767 (GRCm39)	H335Q	probably benign	Het
Mapre2	A	G	18: 24,016,707 (GRCm39)	D287G	probably benign	Het
Mfsd14b	G	A	13: 65,214,522 (GRCm39)	R477W	probably benign	Het
Mfsd14b	C	A	13: 65,221,414 (GRCm39)	V293L	probably benign	Het
Msh4	A	T	3: 153,607,148 (GRCm39)	S131T	possibly damaging	Het
Nat8f2	A	T	6: 85,844,848 (GRCm39)	D171E	probably benign	Het
Ndufb5	G	T	3: 32,795,881 (GRCm39)	L24F	probably benign	Het
Nkain2	T	C	10: 32,278,291 (GRCm39)	I45V	probably damaging	Het
Nlrp9b	T	G	7: 19,753,302 (GRCm39)	M69R	probably benign	Het
Or4k37	A	T	2: 111,159,633 (GRCm39)	R290*	probably null	Het
Or5d39	A	C	2: 87,979,935 (GRCm39)	C143G	probably damaging	Het
Or5d46	A	T	2: 88,170,821 (GRCm39)	K304I	possibly damaging	Het
Oxct2b	T	A	4: 123,010,413 (GRCm39)	V111E	possibly damaging	Het
Parva	T	A	7: 112,187,753 (GRCm39)	V350D	probably damaging	Het
Pcdhb7	A	G	18: 37,475,434 (GRCm39)	D190G	probably damaging	Het
Pik3c2b	T	C	1: 133,012,725 (GRCm39)		probably null	Het
Plcz1	T	A	6: 139,985,484 (GRCm39)	Q19L	possibly damaging	Het
Prag1	A	G	8: 36,571,069 (GRCm39)	N551D	probably benign	Het
Rb1cc1	G	A	1: 6,310,189 (GRCm39)	V196I	probably damaging	Het
Rnf113a2	T	C	12: 84,464,270 (GRCm39)	V54A	probably benign	Het
Sec14l1	G	A	11: 117,044,102 (GRCm39)	E537K	probably damaging	Het
Shank1	G	A	7: 43,962,342 (GRCm39)	S71N	unknown	Het
Shtn1	T	A	19: 59,026,735 (GRCm39)	I119F	probably damaging	Het
Szt2	A	G	4: 118,266,358 (GRCm39)		probably null	Het
Tasp1	T	C	2: 139,819,567 (GRCm39)	D212G	probably benign	Het
Tmpo	A	G	10: 90,994,608 (GRCm39)		probably null	Het
Usp17lb	T	C	7: 104,489,718 (GRCm39)	K403R	probably benign	Het
Vcpip1	A	G	1: 9,816,019 (GRCm39)	V788A	probably benign	Het
Wdr25	C	A	12: 108,864,613 (GRCm39)	H253N	probably benign	Het
Wwc2	G	A	8: 48,328,360 (GRCm39)	S367L	probably damaging	Het
Zfr	A	G	15: 12,162,292 (GRCm39)	E814G	probably damaging	Het

Other mutations in Ddx19b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01452:Ddx19b	APN	8	111,747,620 (GRCm39)	missense	probably damaging	1.00
IGL02089:Ddx19b	APN	8	111,735,477 (GRCm39)	splice site	probably benign
IGL02445:Ddx19b	APN	8	111,735,456 (GRCm39)	missense	probably damaging	1.00
IGL02756:Ddx19b	APN	8	111,737,910 (GRCm39)	splice site	probably benign
R0411:Ddx19b	UTSW	8	111,750,596 (GRCm39)	critical splice donor site	probably null
R0483:Ddx19b	UTSW	8	111,735,310 (GRCm39)	missense	probably benign	0.07
R1510:Ddx19b	UTSW	8	111,742,285 (GRCm39)	missense	probably damaging	1.00
R1797:Ddx19b	UTSW	8	111,739,439 (GRCm39)	missense	probably damaging	1.00
R1969:Ddx19b	UTSW	8	111,734,890 (GRCm39)	missense	probably benign	0.00
R1981:Ddx19b	UTSW	8	111,735,975 (GRCm39)	missense	possibly damaging	0.88
R1982:Ddx19b	UTSW	8	111,735,975 (GRCm39)	missense	possibly damaging	0.88
R3771:Ddx19b	UTSW	8	111,747,613 (GRCm39)	missense	probably benign	0.03
R4190:Ddx19b	UTSW	8	111,737,980 (GRCm39)	missense	probably damaging	1.00
R4191:Ddx19b	UTSW	8	111,737,980 (GRCm39)	missense	probably damaging	1.00
R4193:Ddx19b	UTSW	8	111,737,980 (GRCm39)	missense	probably damaging	1.00
R5132:Ddx19b	UTSW	8	111,749,040 (GRCm39)	missense	probably benign
R5435:Ddx19b	UTSW	8	111,735,458 (GRCm39)	missense	possibly damaging	0.67
R7980:Ddx19b	UTSW	8	111,738,077 (GRCm39)	missense	possibly damaging	0.83
R8062:Ddx19b	UTSW	8	111,747,611 (GRCm39)	missense	probably benign	0.00
R8265:Ddx19b	UTSW	8	111,735,824 (GRCm39)	missense	probably damaging	1.00
R8899:Ddx19b	UTSW	8	111,737,929 (GRCm39)	missense	probably damaging	1.00
R9136:Ddx19b	UTSW	8	111,734,906 (GRCm39)	missense	probably benign
Z1088:Ddx19b	UTSW	8	111,742,207 (GRCm39)	missense	probably benign	0.37

Predicted Primers

PCR Primer
(F):5'- AGGATGTAGCTGAGAACACCTAAC -3'
(R):5'- ACCTGGGGTGACATTGAATAG -3'

Sequencing Primer
(F):5'- GTTTTTACATAACACTCAAAGCAGC -3'
(R):5'- GTCTCTGTAGATGGCCTCAAAC -3'

Posted On

2022-08-09