Mutagenetix > Incidental Mutation

Incidental Mutation 'R9006:Zranb1'

723597

Institutional Source

Beutler Lab

Gene Symbol

Zranb1

Ensembl Gene

ENSMUSG00000030967

Gene Name

zinc finger, RAN-binding domain containing 1

Synonyms

9330160G10Rik, D7Wsu87e

MMRRC Submission

068836-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.915) question?

Stock #

R9006 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

132532905-132588127 bp(+) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

T to A at 132572909 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000148867 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000033265] [ENSMUST00000106157] [ENSMUST00000124096] [ENSMUST00000210507] [ENSMUST00000215716]

AlphaFold

Q7M760

Predicted Effect

probably benign
Transcript: ENSMUST00000033265

SMART Domains

Protein: ENSMUSP00000033265
Gene: ENSMUSG00000030967

Domain	Start	End	E-Value	Type
ZnF_RBZ	6	30	9.14e-5	SMART
ZnF_RBZ	86	110	6.56e-6	SMART
ZnF_RBZ	151	175	1.69e-8	SMART
low complexity region	180	195	N/A	INTRINSIC
Pfam:OTU	438	586	9.8e-35	PFAM
low complexity region	698	708	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000106157

SMART Domains

Protein: ENSMUSP00000101763
Gene: ENSMUSG00000030967

Domain	Start	End	E-Value	Type
ZnF_RBZ	6	30	9.14e-5	SMART
ZnF_RBZ	86	110	6.56e-6	SMART
ZnF_RBZ	151	175	1.69e-8	SMART
low complexity region	180	195	N/A	INTRINSIC
Pfam:OTU	438	586	1.5e-40	PFAM
low complexity region	698	708	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000124096

SMART Domains

Protein: ENSMUSP00000130971
Gene: ENSMUSG00000030849

Domain	Start	End	E-Value	Type
Pfam:Pkinase	1	118	4.8e-19	PFAM
Pfam:Pkinase_Tyr	1	118	1.7e-50	PFAM
low complexity region	146	160	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000210507

Predicted Effect

probably benign
Transcript: ENSMUST00000215716

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.7%

Validation Efficiency

97% (72/74)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit decreased CD4+ T cells and decreased susceptibility to experimental autoimmune encephalomyelitis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc6	T	C	7: 45,665,820 (GRCm39)	N267D	probably benign	Het
Akap1	A	T	11: 88,723,996 (GRCm39)	M803K	possibly damaging	Het
Amer2	G	C	14: 60,617,376 (GRCm39)	D524H	probably damaging	Het
Ankrd31	T	C	13: 96,967,104 (GRCm39)	F528L	probably benign	Het
Arhgef10l	A	G	4: 140,271,659 (GRCm39)	Y624H	probably benign	Het
Bltp2	T	C	11: 78,164,345 (GRCm39)	F1182L	possibly damaging	Het
Cfap73	G	A	5: 120,767,760 (GRCm39)	Q264*	probably null	Het
Clca3a2	C	A	3: 144,783,789 (GRCm39)	A609S	probably damaging	Het
Cntfr	A	T	4: 41,661,971 (GRCm39)		probably null	Het
Cyp2c65	C	T	19: 39,070,714 (GRCm39)	T299I	probably damaging	Het
Cyp2j5	G	T	4: 96,552,149 (GRCm39)	N33K	probably benign	Het
Dhcr7	T	A	7: 143,394,978 (GRCm39)	S165T	probably benign	Het
Dnah10	A	T	5: 124,820,783 (GRCm39)	D539V	probably benign	Het
Ebag9	A	T	15: 44,503,703 (GRCm39)	Q176L	probably benign	Het
Fbxw20	T	A	9: 109,062,530 (GRCm39)		probably benign	Het
Ftmt	A	G	18: 52,465,112 (GRCm39)	K143E	possibly damaging	Het
Gcc2	C	T	10: 58,103,801 (GRCm39)	R76C	probably damaging	Het
Gcn1	A	G	5: 115,719,566 (GRCm39)	T354A	probably benign	Het
Gtf2h1	A	G	7: 46,458,262 (GRCm39)	M271V	probably benign	Het
Iah1	G	A	12: 21,367,402 (GRCm39)	G36D	probably damaging	Het
Ism2	G	T	12: 87,326,969 (GRCm39)	D323E	probably damaging	Het
Itih4	A	G	14: 30,612,086 (GRCm39)	I184V	probably damaging	Het
Kdm4d	C	A	9: 14,374,833 (GRCm39)	V342L	probably benign	Het
Lmbr1	A	G	5: 29,551,900 (GRCm39)	F62L	probably benign	Het
Lmo7	TCGGATTCTGTGGC	TC	14: 102,155,072 (GRCm39)		probably benign	Het
Lypd8	T	A	11: 58,277,586 (GRCm39)	S123T	possibly damaging	Het
Mical2	T	A	7: 111,981,323 (GRCm39)	N432K	probably benign	Het
Mrgprb4	A	G	7: 47,848,343 (GRCm39)	V195A	probably benign	Het
Ms4a4c	A	T	19: 11,396,360 (GRCm39)	I106F	probably benign	Het
Myo6	A	G	9: 80,136,140 (GRCm39)	T88A	unknown	Het
Naa35	A	G	13: 59,748,842 (GRCm39)	D158G	possibly damaging	Het
Nol12	A	G	15: 78,824,291 (GRCm39)	E137G	possibly damaging	Het
Nsun4	A	G	4: 115,897,316 (GRCm39)	S232P	probably damaging	Het
Odad2	A	T	18: 7,294,516 (GRCm39)	N32K	probably benign	Het
Odam	A	T	5: 88,040,298 (GRCm39)	I255L	probably benign	Het
Or14j8	A	T	17: 38,263,545 (GRCm39)	Y123*	probably null	Het
Or1ad8	A	T	11: 50,897,975 (GRCm39)	M59L	probably damaging	Het
Or1e26	T	A	11: 73,480,036 (GRCm39)	H176L	probably benign	Het
Or2n1d	T	C	17: 38,646,723 (GRCm39)	V225A	possibly damaging	Het
Or2w3b	G	A	11: 58,623,188 (GRCm39)	Q268*	probably null	Het
Or4b1	T	G	2: 89,980,327 (GRCm39)	T8P	probably damaging	Het
Pcnx2	T	C	8: 126,613,996 (GRCm39)	D485G	probably benign	Het
Polr3b	T	A	10: 84,467,697 (GRCm39)	N92K	probably benign	Het
Rpgrip1l	T	A	8: 92,007,436 (GRCm39)	M385L	probably benign	Het
Sdk1	A	T	5: 141,923,321 (GRCm39)	N314I	probably damaging	Het
Shc4	T	C	2: 125,514,394 (GRCm39)		probably benign	Het
Slc45a1	A	C	4: 150,722,731 (GRCm39)	C384W	probably damaging	Het
Slc4a11	C	T	2: 130,532,773 (GRCm39)	V227M	probably damaging	Het
Sorbs2	A	C	8: 46,258,858 (GRCm39)	S1132R	possibly damaging	Het
Spata31e3	G	A	13: 50,401,589 (GRCm39)	H246Y	possibly damaging	Het
Spata31f1e	C	T	4: 42,792,546 (GRCm39)	G529S	probably benign	Het
Spta1	T	A	1: 174,047,537 (GRCm39)	I1727K	probably damaging	Het
Srgap2	T	C	1: 131,283,307 (GRCm39)	E258G	probably damaging	Het
Taco1	A	T	11: 105,956,931 (GRCm39)		probably benign	Het
Taf2	A	T	15: 54,909,301 (GRCm39)	M648K	possibly damaging	Het
Taf7	A	G	18: 37,775,757 (GRCm39)	V270A	probably benign	Het
Tbkbp1	G	A	11: 97,029,707 (GRCm39)	T483I	unknown	Het
Tesc	A	G	5: 118,184,378 (GRCm39)		probably null	Het
Tgs1	A	G	4: 3,595,427 (GRCm39)	N532S	probably benign	Het
Tmco1	C	T	1: 167,136,132 (GRCm39)		probably benign	Het
Tmem196	T	A	12: 119,978,510 (GRCm39)	C84S	probably damaging	Het
Topbp1	C	T	9: 103,182,499 (GRCm39)		probably benign	Het
Ttc16	A	G	2: 32,652,985 (GRCm39)	S615P	probably benign	Het
Ttc21a	T	A	9: 119,792,130 (GRCm39)		probably benign	Het
Tuba3b	T	C	6: 145,565,564 (GRCm39)	V344A	possibly damaging	Het
Tubgcp4	T	C	2: 121,015,251 (GRCm39)	F320L	probably benign	Het
Tusc3	T	A	8: 39,538,627 (GRCm39)	L222*	probably null	Het
Ubr4	G	A	4: 139,172,003 (GRCm39)		probably null	Het
Uncx	G	T	5: 139,532,936 (GRCm39)	V334L	possibly damaging	Het
Vezf1	C	A	11: 87,965,542 (GRCm39)	F261L	probably damaging	Het
Vezt	T	A	10: 93,809,874 (GRCm39)	I556L	probably benign	Het
Vmn1r172	C	T	7: 23,359,402 (GRCm39)	R96C	probably benign	Het
Zfp383	A	G	7: 29,608,070 (GRCm39)	M1V	probably null	Het
Zfp558	A	T	9: 18,367,776 (GRCm39)	S337R	possibly damaging	Het

Other mutations in Zranb1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00499:Zranb1	APN	7	132,584,233 (GRCm39)	splice site	probably benign
IGL00843:Zranb1	APN	7	132,551,622 (GRCm39)	missense	probably benign	0.26
IGL01727:Zranb1	APN	7	132,568,349 (GRCm39)	missense	probably damaging	1.00
IGL02087:Zranb1	APN	7	132,575,146 (GRCm39)	splice site	probably benign
IGL02676:Zranb1	APN	7	132,568,410 (GRCm39)	missense	probably benign	0.16
IGL03081:Zranb1	APN	7	132,552,126 (GRCm39)	missense	probably damaging	0.99
IGL03095:Zranb1	APN	7	132,551,635 (GRCm39)	nonsense	probably null
IGL03186:Zranb1	APN	7	132,551,932 (GRCm39)	missense	possibly damaging	0.68
PIT4151001:Zranb1	UTSW	7	132,551,723 (GRCm39)	missense	probably benign
R0207:Zranb1	UTSW	7	132,552,114 (GRCm39)	missense	probably damaging	1.00
R0470:Zranb1	UTSW	7	132,584,500 (GRCm39)	missense	probably damaging	1.00
R0854:Zranb1	UTSW	7	132,551,577 (GRCm39)	missense	possibly damaging	0.78
R1318:Zranb1	UTSW	7	132,568,281 (GRCm39)	nonsense	probably null
R1389:Zranb1	UTSW	7	132,573,062 (GRCm39)	missense	probably damaging	1.00
R1480:Zranb1	UTSW	7	132,551,745 (GRCm39)	missense	probably benign	0.39
R1656:Zranb1	UTSW	7	132,551,496 (GRCm39)	missense	probably benign	0.31
R1956:Zranb1	UTSW	7	132,584,458 (GRCm39)	missense	probably damaging	1.00
R1958:Zranb1	UTSW	7	132,584,458 (GRCm39)	missense	probably damaging	1.00
R2010:Zranb1	UTSW	7	132,568,425 (GRCm39)	critical splice donor site	probably null
R2289:Zranb1	UTSW	7	132,551,768 (GRCm39)	missense	probably damaging	1.00
R3831:Zranb1	UTSW	7	132,584,505 (GRCm39)	missense	probably damaging	0.98
R4128:Zranb1	UTSW	7	132,568,281 (GRCm39)	nonsense	probably null
R4745:Zranb1	UTSW	7	132,574,443 (GRCm39)	missense	probably damaging	0.97
R5121:Zranb1	UTSW	7	132,551,916 (GRCm39)	missense	probably benign	0.06
R5262:Zranb1	UTSW	7	132,584,556 (GRCm39)	small insertion	probably benign
R5263:Zranb1	UTSW	7	132,584,556 (GRCm39)	small insertion	probably benign
R5264:Zranb1	UTSW	7	132,584,556 (GRCm39)	small insertion	probably benign
R5522:Zranb1	UTSW	7	132,585,678 (GRCm39)	makesense	probably null
R6252:Zranb1	UTSW	7	132,585,633 (GRCm39)	missense	probably benign	0.00
R6519:Zranb1	UTSW	7	132,551,857 (GRCm39)	nonsense	probably null
R6671:Zranb1	UTSW	7	132,573,042 (GRCm39)	missense	probably damaging	1.00
R6827:Zranb1	UTSW	7	132,551,474 (GRCm39)	missense	probably benign	0.17
R6928:Zranb1	UTSW	7	132,568,323 (GRCm39)	missense	possibly damaging	0.65
R7313:Zranb1	UTSW	7	132,584,481 (GRCm39)	missense	probably damaging	1.00
R7583:Zranb1	UTSW	7	132,585,625 (GRCm39)	missense	probably benign	0.00
R8181:Zranb1	UTSW	7	132,585,508 (GRCm39)	missense	probably damaging	1.00
R8236:Zranb1	UTSW	7	132,551,393 (GRCm39)	missense	probably damaging	0.99
R8463:Zranb1	UTSW	7	132,551,810 (GRCm39)	missense	possibly damaging	0.68
R9103:Zranb1	UTSW	7	132,584,167 (GRCm39)	missense	probably damaging	0.96
R9134:Zranb1	UTSW	7	132,551,886 (GRCm39)	missense	probably benign	0.00
R9229:Zranb1	UTSW	7	132,583,117 (GRCm39)	missense	probably damaging	0.98
R9244:Zranb1	UTSW	7	132,585,640 (GRCm39)	missense	probably damaging	1.00
R9417:Zranb1	UTSW	7	132,585,466 (GRCm39)	missense	probably damaging	1.00
R9596:Zranb1	UTSW	7	132,552,146 (GRCm39)	missense	probably benign	0.32
R9708:Zranb1	UTSW	7	132,584,600 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- CAATTGGAGTGCTAGATGGAGTC -3'
(R):5'- TAAATGTCGGGGTTACCTGC -3'

Sequencing Primer
(F):5'- AGTGCTAGATGGAGTCTGTACC -3'
(R):5'- ACCTGCTGGTAATGTAAATGTTAC -3'

Posted On

2022-09-08