Mutagenetix > Incidental Mutation

Incidental Mutation 'R9621:Prorp'

724817

Institutional Source

Beutler Lab

Gene Symbol

Prorp

Ensembl Gene

ENSMUSG00000021023

Gene Name

protein only RNase P catalytic subunit

Synonyms

Mrpp3, 1110008L16Rik

MMRRC Submission

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.513) question?

Stock #

R9621 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

55349422-55429276 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 55429042 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Asparagine at position 538 (H538N)

Ref Sequence

ENSEMBL: ENSMUSP00000021411 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021411] [ENSMUST00000163070] [ENSMUST00000183475] [ENSMUST00000183654] [ENSMUST00000184766] [ENSMUST00000184980]

AlphaFold

Q8JZY4

Predicted Effect

probably benign
Transcript: ENSMUST00000021411
AA Change: H538N

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000021411
Gene: ENSMUSG00000021023
AA Change: H538N

Domain	Start	End	E-Value	Type
Pfam:PRORP	339	575	4.8e-106	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000163070

SMART Domains

Protein: ENSMUSP00000124781
Gene: ENSMUSG00000021024

Domain	Start	End	E-Value	Type
Pfam:Proteasome	13	201	1.5e-56	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000183475
AA Change: H522N

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000139252
Gene: ENSMUSG00000021023
AA Change: H522N

Domain	Start	End	E-Value	Type
low complexity region	410	424	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000183654
AA Change: H169N

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000138821
Gene: ENSMUSG00000021023
AA Change: H169N

Domain	Start	End	E-Value	Type
Pfam:RNase_Zc3h12a	33	185	8e-7	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000184766
AA Change: H538N

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000139204
Gene: ENSMUSG00000021023
AA Change: H538N

Domain	Start	End	E-Value	Type
PDB:4G26\|A	153	581	1e-9	PDB

Predicted Effect

probably benign
Transcript: ENSMUST00000184980
AA Change: H225N

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000139123
Gene: ENSMUSG00000021023
AA Change: H225N

Domain	Start	End	E-Value	Type
low complexity region	113	127	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.9%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca1	T	C	4: 53,092,918 (GRCm39)	T289A	probably benign	Het
Adnp	A	T	2: 168,024,663 (GRCm39)	S877R	probably benign	Het
Akap13	T	A	7: 75,386,090 (GRCm39)	H555Q	probably benign	Het
Alg6	T	A	4: 99,615,131 (GRCm39)	Y38*	probably null	Het
Amtn	C	A	5: 88,528,205 (GRCm39)	Q93K	probably benign	Het
Ap2b1	T	C	11: 83,293,424 (GRCm39)	V937A	probably damaging	Het
Arih1	ATCGTCCGGCTCGTCCTCGTCGTCGTCC	ATCGTCC	9: 59,393,520 (GRCm39)		probably benign	Het
Atosa	A	G	9: 74,917,512 (GRCm39)	N711D	possibly damaging	Het
Bhmt	A	G	13: 93,758,079 (GRCm39)	S211P	possibly damaging	Het
Bltp3a	T	A	17: 28,105,753 (GRCm39)	S760T	probably benign	Het
Bmp1	T	C	14: 70,715,306 (GRCm39)	Y943C	probably benign	Het
Calcoco2	TCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTTCTCCCAGGAGGCCTTCTCTTCC	TCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTCCTCCCAGGAGGCCTTCTCTTTCTCCCAGGAGGCCTTCTCTTCC	11: 95,990,862 (GRCm39)		probably null	Het
Cbfb	A	C	8: 105,905,243 (GRCm39)	T62P	probably damaging	Het
Ccdc154	T	C	17: 25,386,355 (GRCm39)	F249L	probably damaging	Het
Cdh26	T	A	2: 178,111,983 (GRCm39)	F514L	probably damaging	Het
Cdhr2	A	G	13: 54,866,350 (GRCm39)	E352G		Het
Cep295nl	G	A	11: 118,224,766 (GRCm39)	P26L	possibly damaging	Het
Cfdp1	A	G	8: 112,571,807 (GRCm39)	V34A	probably damaging	Het
Cntnap2	A	T	6: 46,965,726 (GRCm39)	I846F	probably damaging	Het
Cntrl	A	G	2: 35,050,278 (GRCm39)	K1464E	probably damaging	Het
Crybg3	T	C	16: 59,326,613 (GRCm39)	D1039G	possibly damaging	Het
Csmd3	A	T	15: 47,713,116 (GRCm39)	S778R		Het
Daam2	C	T	17: 49,780,332 (GRCm39)	C729Y	probably damaging	Het
Ddx18	T	C	1: 121,489,132 (GRCm39)	H305R	probably damaging	Het
Dio1	C	T	4: 107,149,558 (GRCm39)	C248Y	probably benign	Het
Dnah1	C	A	14: 31,016,772 (GRCm39)	A1582S	probably damaging	Het
Eef1a1	A	T	9: 78,386,632 (GRCm39)	D319E	probably benign	Het
Fam171b	G	A	2: 83,643,109 (GRCm39)	R6H	probably damaging	Het
Flnb	G	A	14: 7,926,421 (GRCm38)	G1822R	probably damaging	Het
Gabrb1	G	A	5: 72,279,363 (GRCm39)	V303I	possibly damaging	Het
Gli3	T	G	13: 15,901,253 (GRCm39)	S1547A	probably benign	Het
Gm4884	A	T	7: 40,693,111 (GRCm39)	N360I	possibly damaging	Het
Ift70b	T	C	2: 75,768,144 (GRCm39)	Y203C	probably damaging	Het
Il1rl2	CTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATT	CTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATT	1: 40,366,470 (GRCm39)		probably benign	Het
Ino80	C	G	2: 119,280,496 (GRCm39)	K289N	probably damaging	Het
Itpr1	G	A	6: 108,393,870 (GRCm39)	E1638K	probably damaging	Het
Jakmip1	A	T	5: 37,274,812 (GRCm39)	I45F	unknown	Het
Kif1a	G	A	1: 92,983,445 (GRCm39)	P684L	probably benign	Het
Kpnb1	A	T	11: 97,058,460 (GRCm39)	S610T	probably benign	Het
Man1a2	A	G	3: 100,591,961 (GRCm39)	V73A	probably benign	Het
Mbtps1	A	G	8: 120,235,621 (GRCm39)	V1019A	possibly damaging	Het
Muc21	T	A	17: 35,932,720 (GRCm39)	T489S	unknown	Het
Nup210	G	C	6: 90,994,375 (GRCm39)	N1774K	probably benign	Het
Or10p21	G	T	10: 128,847,759 (GRCm39)	V202F	probably benign	Het
Pik3c2b	T	C	1: 132,999,345 (GRCm39)	S398P	probably damaging	Het
Pmpca	A	G	2: 26,279,988 (GRCm39)	T37A	probably benign	Het
Ppfia1	A	G	7: 144,052,516 (GRCm39)	S840P	probably damaging	Het
Prkcq	A	T	2: 11,261,014 (GRCm39)	K355N	probably benign	Het
Ptprg	A	G	14: 12,237,809 (GRCm38)	K1422R	probably benign	Het
Ptprq	T	C	10: 107,378,523 (GRCm39)	E2006G	probably damaging	Het
Qsox1	TG	T	1: 155,671,135 (GRCm39)		probably null	Het
Rcor2	A	T	19: 7,251,591 (GRCm39)	T412S	probably benign	Het
Rnf224	A	T	2: 25,126,200 (GRCm39)	M51K	probably benign	Het
Robo4	A	G	9: 37,317,509 (GRCm39)	D521G	probably damaging	Het
Sf3b4	T	A	3: 96,084,115 (GRCm39)	S360T	unknown	Het
Sgo2b	T	C	8: 64,380,651 (GRCm39)	D727G	probably damaging	Het
Smpd2	C	A	10: 41,364,283 (GRCm39)	V172L	probably benign	Het
Spring1	C	T	5: 118,393,880 (GRCm39)	T86I	possibly damaging	Het
Syne1	C	T	10: 5,273,887 (GRCm39)	A1966T	probably benign	Het
Syt13	G	A	2: 92,745,575 (GRCm39)	G15D	possibly damaging	Het
Taf3	A	T	2: 9,923,070 (GRCm39)	L18Q	unknown	Het
Tcam1	T	A	11: 106,176,259 (GRCm39)	N328K	probably damaging	Het
Tekt2	C	T	4: 126,217,444 (GRCm39)	R207H	probably damaging	Het
Tet2	A	T	3: 133,193,767 (GRCm39)	Y222*	probably null	Het
Timm29	A	T	9: 21,504,218 (GRCm39)		probably benign	Het
Tmc6	T	C	11: 117,669,995 (GRCm39)	D17G	probably benign	Het
Tmem30a	T	A	9: 79,687,926 (GRCm39)	D81V	probably benign	Het
Tnnt1	T	C	7: 4,511,501 (GRCm39)	I195V	probably benign	Het
Ttll5	T	A	12: 85,938,896 (GRCm39)	V398E	possibly damaging	Het
Ttn	T	C	2: 76,748,441 (GRCm39)	T4203A	possibly damaging	Het
Ubc	A	G	5: 125,464,511 (GRCm39)	I272T	probably damaging	Het
Unc45a	A	G	7: 79,983,785 (GRCm39)	L337P	probably damaging	Het
Vmn1r229	T	C	17: 21,035,315 (GRCm39)	F187L	probably benign	Het
Wrn	A	T	8: 33,814,301 (GRCm39)	M381K	probably benign	Het
Zdbf2	A	G	1: 63,342,635 (GRCm39)	N338S	possibly damaging	Het
Zfp541	A	G	7: 15,805,892 (GRCm39)	E9G	possibly damaging	Het
Zrsr2-ps1	G	A	11: 22,923,418 (GRCm39)	R64Q	possibly damaging	Het
Zswim8	T	A	14: 20,772,231 (GRCm39)	S1614T	probably benign	Het

Other mutations in Prorp

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01701:Prorp	APN	12	55,355,660 (GRCm39)	splice site	probably benign
IGL01932:Prorp	APN	12	55,350,910 (GRCm39)	missense	probably benign
IGL03030:Prorp	APN	12	55,351,429 (GRCm39)	missense	probably damaging	1.00
R0102:Prorp	UTSW	12	55,429,082 (GRCm39)	missense	probably benign	0.37
R0892:Prorp	UTSW	12	55,429,033 (GRCm39)	splice site	probably null
R1479:Prorp	UTSW	12	55,426,172 (GRCm39)	missense	probably damaging	1.00
R1510:Prorp	UTSW	12	55,350,997 (GRCm39)	missense	probably benign	0.21
R1845:Prorp	UTSW	12	55,351,117 (GRCm39)	missense	possibly damaging	0.58
R1992:Prorp	UTSW	12	55,384,991 (GRCm39)	missense	probably damaging	1.00
R2307:Prorp	UTSW	12	55,351,101 (GRCm39)	missense	probably damaging	1.00
R4080:Prorp	UTSW	12	55,351,398 (GRCm39)	missense	possibly damaging	0.88
R4081:Prorp	UTSW	12	55,351,398 (GRCm39)	missense	possibly damaging	0.88
R4082:Prorp	UTSW	12	55,351,398 (GRCm39)	missense	possibly damaging	0.88
R5205:Prorp	UTSW	12	55,351,226 (GRCm39)	nonsense	probably null
R5590:Prorp	UTSW	12	55,351,257 (GRCm39)	missense	possibly damaging	0.89
R5940:Prorp	UTSW	12	55,351,659 (GRCm39)	missense	probably damaging	1.00
R5988:Prorp	UTSW	12	55,424,002 (GRCm39)	missense	probably damaging	1.00
R6147:Prorp	UTSW	12	55,426,093 (GRCm39)	missense	probably damaging	0.99
R7208:Prorp	UTSW	12	55,355,430 (GRCm39)	splice site	probably null
R7220:Prorp	UTSW	12	55,351,200 (GRCm39)	missense	possibly damaging	0.79
R7304:Prorp	UTSW	12	55,351,429 (GRCm39)	missense	probably damaging	1.00
R7316:Prorp	UTSW	12	55,351,429 (GRCm39)	missense	probably damaging	1.00
R7502:Prorp	UTSW	12	55,351,206 (GRCm39)	missense	probably damaging	1.00
R7908:Prorp	UTSW	12	55,426,250 (GRCm39)	missense	possibly damaging	0.56
R7967:Prorp	UTSW	12	55,350,979 (GRCm39)	missense	probably benign
R9030:Prorp	UTSW	12	55,426,192 (GRCm39)	missense	probably damaging	1.00
R9125:Prorp	UTSW	12	55,355,611 (GRCm39)	missense	possibly damaging	0.77
R9135:Prorp	UTSW	12	55,426,189 (GRCm39)	missense	probably damaging	1.00
R9136:Prorp	UTSW	12	55,350,727 (GRCm39)	missense	probably benign
R9321:Prorp	UTSW	12	55,351,434 (GRCm39)	missense	possibly damaging	0.94
R9456:Prorp	UTSW	12	55,385,015 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GTGCATCAGTACATATGTGTGC -3'
(R):5'- GTTTGACGCTGCAAAACCAAC -3'

Sequencing Primer
(F):5'- CAGTACATATGTGTGCATGCACC -3'
(R):5'- TCATGGCAGACATCAGCATG -3'

Posted On

2022-09-12