Mutagenetix > Incidental Mutation

Incidental Mutation 'R9622:Sparcl1'

724858

Institutional Source

Beutler Lab

Gene Symbol

Sparcl1

Ensembl Gene

ENSMUSG00000029309

Gene Name

SPARC-like 1

Synonyms

hevin, Ecm2, mast9, Sc1

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9622 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

104226977-104261599 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 104234998 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Leucine at position 506 (V506L)

Ref Sequence

ENSEMBL: ENSMUSP00000031249 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031249]

AlphaFold

P70663

Predicted Effect

possibly damaging
Transcript: ENSMUST00000031249
AA Change: V506L

PolyPhen 2 Score 0.622 (Sensitivity: 0.87; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000031249
Gene: ENSMUSG00000029309
AA Change: V506L

Domain	Start	End	E-Value	Type
signal peptide	1	16	N/A	INTRINSIC
low complexity region	70	81	N/A	INTRINSIC
low complexity region	90	101	N/A	INTRINSIC
low complexity region	192	210	N/A	INTRINSIC
low complexity region	330	340	N/A	INTRINSIC
low complexity region	372	381	N/A	INTRINSIC
FOLN	418	441	2.33e-5	SMART
KAZAL	441	495	3.62e-11	SMART
Pfam:SPARC_Ca_bdg	498	636	2.8e-44	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.2%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a targeted null mutation exhibit no discernable phenotype; mice are viable and fertile with normal histology and survival. [provided by MGI curators]

Allele List at MGI

All alleles(5) : Targeted(1) Gene trapped(4)

Other mutations in this stock

Total: 80 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ablim2	A	G	5: 36,006,889 (GRCm39)	K435E	probably damaging	Het
Acly	T	C	11: 100,395,785 (GRCm39)	T412A	probably damaging	Het
Aldh3b2	T	A	19: 4,029,489 (GRCm39)	D287E	probably benign	Het
Asphd1	G	A	7: 126,547,974 (GRCm39)	P110S		Het
Atg7	T	C	6: 114,654,993 (GRCm39)	L142P	probably benign	Het
Atp13a4	T	C	16: 29,239,277 (GRCm39)	I796V		Het
Bbx	A	G	16: 50,095,022 (GRCm39)	V98A	probably damaging	Het
Brca2	T	C	5: 150,480,410 (GRCm39)	S2727P	probably damaging	Het
Camk1	T	A	6: 113,318,850 (GRCm39)	D21V	possibly damaging	Het
Cdc5l	A	T	17: 45,715,709 (GRCm39)	D634E	probably benign	Het
Cfap418	T	C	4: 10,893,304 (GRCm39)	I141T	possibly damaging	Het
Cyfip1	A	T	7: 55,528,853 (GRCm39)	D275V	possibly damaging	Het
Cyp4a30b	A	G	4: 115,328,162 (GRCm39)	E477G	probably damaging	Het
Cyp4f16	C	T	17: 32,769,246 (GRCm39)	P379S	probably damaging	Het
Dchs2	C	T	3: 83,263,766 (GRCm39)	Q3345*	probably null	Het
Dnaaf1	A	G	8: 120,315,001 (GRCm39)	T270A	possibly damaging	Het
Dnah3	A	G	7: 119,561,356 (GRCm39)	V334A		Het
Dnhd1	T	C	7: 105,353,342 (GRCm39)	F2832L	probably benign	Het
Dock8	A	G	19: 25,098,545 (GRCm39)	N623S	probably null	Het
Eif4enif1	T	C	11: 3,165,714 (GRCm39)	I97T	probably benign	Het
Elmo1	C	G	13: 20,392,310 (GRCm39)	P29A	probably benign	Het
Erich6	G	C	3: 58,544,162 (GRCm39)	P142A	possibly damaging	Het
Fam135b	T	C	15: 71,397,686 (GRCm39)	R125G	probably damaging	Het
Fcrla	T	A	1: 170,749,808 (GRCm39)	H83L	probably damaging	Het
Flt3	C	T	5: 147,303,841 (GRCm39)	E366K	possibly damaging	Het
Gabbr2	C	T	4: 46,724,283 (GRCm39)		probably null	Het
Gigyf1	T	A	5: 137,522,926 (GRCm39)	L809*	probably null	Het
Glg1	C	T	8: 111,899,133 (GRCm39)	G711R	probably damaging	Het
Gp1bb	T	C	16: 18,439,527 (GRCm39)	E189G	probably benign	Het
H2-Q1	A	T	17: 35,542,532 (GRCm39)	I326F	probably benign	Het
Hoxb3	A	T	11: 96,235,420 (GRCm39)	K116*	probably null	Het
Kcnb1	T	C	2: 167,030,161 (GRCm39)	Y128C	probably damaging	Het
Kif5b	G	A	18: 6,225,672 (GRCm39)	R171C	probably damaging	Het
Lcn4	G	A	2: 26,561,228 (GRCm39)	Q18*	probably null	Het
Lrp1b	G	A	2: 40,779,354 (GRCm39)	Q2677*	probably null	Het
Map4k3	T	A	17: 80,958,538 (GRCm39)	T145S	probably damaging	Het
Mas1	T	C	17: 13,060,898 (GRCm39)	E175G	probably benign	Het
Metap2	T	C	10: 93,707,366 (GRCm39)	T202A	probably benign	Het
Mras	A	T	9: 99,275,054 (GRCm39)	M131K	probably benign	Het
Mtor	T	C	4: 148,568,169 (GRCm39)	V1092A	probably damaging	Het
Mug2	T	C	6: 122,028,751 (GRCm39)	S582P	probably benign	Het
Myo5b	A	G	18: 74,848,017 (GRCm39)	N1085S	probably damaging	Het
Nav3	T	C	10: 109,603,103 (GRCm39)	T1149A	probably benign	Het
Nipbl	A	T	15: 8,366,373 (GRCm39)	S1239T	probably benign	Het
Nkpd1	C	A	7: 19,257,867 (GRCm39)	R549S	probably benign	Het
Or10a3m	T	A	7: 108,312,677 (GRCm39)	M39K	probably benign	Het
Or10p1	G	A	10: 129,444,084 (GRCm39)	H89Y	probably benign	Het
Or1j1	A	G	2: 36,702,621 (GRCm39)	L161P	probably damaging	Het
Or51i2	T	A	7: 103,689,522 (GRCm39)	V173D	probably damaging	Het
Pcdh18	T	C	3: 49,711,229 (GRCm39)	N29D	probably benign	Het
Pdzrn4	T	C	15: 92,294,949 (GRCm39)	W52R	probably benign	Het
Plekhb1	T	C	7: 100,304,588 (GRCm39)	K39E	probably damaging	Het
Pramel28	A	G	4: 143,692,348 (GRCm39)	S218P	probably benign	Het
Psmb4	C	A	3: 94,792,285 (GRCm39)	E212D	probably benign	Het
Rcc1l	A	G	5: 134,205,348 (GRCm39)	L69P	probably damaging	Het
Robo2	T	C	16: 73,729,952 (GRCm39)	R1082G	probably benign	Het
Rorb	T	C	19: 18,955,115 (GRCm39)	Y167C	probably damaging	Het
Sanbr	T	A	11: 23,534,590 (GRCm39)	K589I	probably damaging	Het
Sbsn	GGAAATATGGCAGACAAGTTTGGTCAGGGGGCCCACCATGCTTTTGGTCAGGGCAG	GG	7: 30,452,067 (GRCm39)		probably benign	Het
Scaf8	T	A	17: 3,248,170 (GRCm39)	F1164L	probably benign	Het
Scn10a	A	T	9: 119,438,046 (GRCm39)	M1940K	probably benign	Het
Serpinb2	A	G	1: 107,452,298 (GRCm39)	N292S	probably benign	Het
Stt3a	A	G	9: 36,661,025 (GRCm39)	V262A	possibly damaging	Het
Syt17	C	A	7: 118,036,191 (GRCm39)	M58I	probably benign	Het
Tas2r134	A	C	2: 51,518,358 (GRCm39)	N279T	possibly damaging	Het
Tbc1d2	T	C	4: 46,609,065 (GRCm39)	E724G	probably damaging	Het
Teddm1b	T	A	1: 153,750,620 (GRCm39)	L143Q		Het
Tlk1	T	A	2: 70,617,281 (GRCm39)	R66S	probably damaging	Het
Tmem139	A	T	6: 42,240,176 (GRCm39)		probably null	Het
Tom1l2	T	C	11: 60,151,942 (GRCm39)	Y155C	possibly damaging	Het
Trmt1l	C	A	1: 151,304,710 (GRCm39)	S28*	probably null	Het
Ttf2	T	C	3: 100,859,918 (GRCm39)	I679V	probably benign	Het
Unc13b	T	G	4: 43,172,513 (GRCm39)	F1114V		Het
Vmn2r25	T	A	6: 123,816,579 (GRCm39)	D334V	probably damaging	Het
Vps13c	T	G	9: 67,856,715 (GRCm39)	Y2581D	probably damaging	Het
Xkr5	A	G	8: 18,984,247 (GRCm39)	S432P	probably benign	Het
Zc2hc1b	G	A	10: 13,043,677 (GRCm39)	P73S	possibly damaging	Het
Zfhx2	A	C	14: 55,303,483 (GRCm39)	F1500L	probably benign	Het
Zfp3	T	G	11: 70,662,739 (GRCm39)	S233A	possibly damaging	Het
Zmat5	T	C	11: 4,687,453 (GRCm39)	W169R	probably damaging	Het

Other mutations in Sparcl1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00653:Sparcl1	APN	5	104,240,788 (GRCm39)	missense	probably benign	0.04
IGL01291:Sparcl1	APN	5	104,242,581 (GRCm39)	missense	possibly damaging	0.88
IGL01958:Sparcl1	APN	5	104,240,406 (GRCm39)	missense	probably benign	0.30
IGL02749:Sparcl1	APN	5	104,240,746 (GRCm39)	missense	possibly damaging	0.57
IGL03034:Sparcl1	APN	5	104,241,103 (GRCm39)	missense	probably damaging	0.96
ANU05:Sparcl1	UTSW	5	104,242,581 (GRCm39)	missense	possibly damaging	0.88
R0007:Sparcl1	UTSW	5	104,234,946 (GRCm39)	missense	probably damaging	1.00
R0007:Sparcl1	UTSW	5	104,234,946 (GRCm39)	missense	probably damaging	1.00
R0071:Sparcl1	UTSW	5	104,233,707 (GRCm39)	nonsense	probably null
R0071:Sparcl1	UTSW	5	104,233,707 (GRCm39)	nonsense	probably null
R0278:Sparcl1	UTSW	5	104,236,263 (GRCm39)	missense	probably benign	0.16
R0360:Sparcl1	UTSW	5	104,237,503 (GRCm39)	missense	probably damaging	0.99
R0581:Sparcl1	UTSW	5	104,241,178 (GRCm39)	missense	probably damaging	0.99
R1755:Sparcl1	UTSW	5	104,240,690 (GRCm39)	missense	probably benign	0.12
R1807:Sparcl1	UTSW	5	104,233,627 (GRCm39)	missense	probably damaging	1.00
R1925:Sparcl1	UTSW	5	104,241,220 (GRCm39)	missense	probably benign	0.09
R2110:Sparcl1	UTSW	5	104,236,289 (GRCm39)	missense	probably damaging	1.00
R2112:Sparcl1	UTSW	5	104,236,289 (GRCm39)	missense	probably damaging	1.00
R2331:Sparcl1	UTSW	5	104,233,660 (GRCm39)	missense	probably damaging	1.00
R2567:Sparcl1	UTSW	5	104,232,954 (GRCm39)	missense	probably damaging	1.00
R3029:Sparcl1	UTSW	5	104,241,092 (GRCm39)	missense	possibly damaging	0.59
R3104:Sparcl1	UTSW	5	104,241,203 (GRCm39)	missense	probably benign	0.00
R3106:Sparcl1	UTSW	5	104,241,203 (GRCm39)	missense	probably benign	0.00
R3979:Sparcl1	UTSW	5	104,240,647 (GRCm39)	missense	probably benign	0.00
R4772:Sparcl1	UTSW	5	104,236,356 (GRCm39)	missense	probably benign	0.15
R4967:Sparcl1	UTSW	5	104,240,776 (GRCm39)	missense	probably damaging	1.00
R5095:Sparcl1	UTSW	5	104,233,629 (GRCm39)	missense	probably damaging	1.00
R5103:Sparcl1	UTSW	5	104,233,629 (GRCm39)	missense	probably damaging	1.00
R5105:Sparcl1	UTSW	5	104,233,629 (GRCm39)	missense	probably damaging	1.00
R5140:Sparcl1	UTSW	5	104,233,629 (GRCm39)	missense	probably damaging	1.00
R5149:Sparcl1	UTSW	5	104,233,629 (GRCm39)	missense	probably damaging	1.00
R6245:Sparcl1	UTSW	5	104,233,013 (GRCm39)	missense	probably damaging	1.00
R6387:Sparcl1	UTSW	5	104,232,926 (GRCm39)	missense	probably damaging	1.00
R6544:Sparcl1	UTSW	5	104,240,310 (GRCm39)	nonsense	probably null
R6930:Sparcl1	UTSW	5	104,234,940 (GRCm39)	missense	probably damaging	1.00
R7246:Sparcl1	UTSW	5	104,233,023 (GRCm39)	missense	probably benign	0.00
R8490:Sparcl1	UTSW	5	104,233,574 (GRCm39)	missense	probably null	1.00
R8860:Sparcl1	UTSW	5	104,241,218 (GRCm39)	missense	probably benign	0.25
R8899:Sparcl1	UTSW	5	104,240,590 (GRCm39)	missense	probably benign	0.01
R9047:Sparcl1	UTSW	5	104,240,979 (GRCm39)	missense	possibly damaging	0.90
R9215:Sparcl1	UTSW	5	104,240,701 (GRCm39)	missense	probably benign	0.05
R9284:Sparcl1	UTSW	5	104,236,345 (GRCm39)	nonsense	probably null
R9424:Sparcl1	UTSW	5	104,241,030 (GRCm39)	missense	possibly damaging	0.91

Predicted Primers

PCR Primer
(F):5'- TGGGTAGGCTAACCATACGCAG -3'
(R):5'- AAATTCCTGCTCTTCAATCCTACAG -3'

Sequencing Primer
(F):5'- TGCCAAGCAGTGCTCCTAC -3'
(R):5'- ATCCTACAGCAGTGGTCCTCAG -3'

Posted On

2022-09-12