Mutagenetix > Incidental Mutation

Incidental Mutation 'R9629:Flrt3'

725325

Institutional Source

Beutler Lab

Gene Symbol

Flrt3

Ensembl Gene

ENSMUSG00000051379

Gene Name

fibronectin leucine rich transmembrane protein 3

Synonyms

5530600M07Rik, C430047I10Rik

MMRRC Submission

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R9629 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

140500118-140513396 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 140502816 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Glycine at position 271 (R271G)

Ref Sequence

ENSEMBL: ENSMUSP00000053399 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000056760] [ENSMUST00000078027] [ENSMUST00000110057] [ENSMUST00000110063] [ENSMUST00000110064] [ENSMUST00000110067]

AlphaFold

Q8BGT1

PDB Structure

FLRT3 LRR domain [X-RAY DIFFRACTION]

Predicted Effect

possibly damaging
Transcript: ENSMUST00000056760
AA Change: R271G

PolyPhen 2 Score 0.528 (Sensitivity: 0.88; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000053399
Gene: ENSMUSG00000051379
AA Change: R271G

Domain	Start	End	E-Value	Type
LRRNT	30	62	3.12e-6	SMART
LRR	82	105	1.03e2	SMART
LRR	127	152	8.26e1	SMART
LRR	156	176	4.58e1	SMART
LRR	198	223	4.09e1	SMART
LRR	224	247	1.33e1	SMART
LRR	248	269	4.2e0	SMART
LRR_TYP	270	293	7.9e-4	SMART
LRRCT	305	356	1.49e-9	SMART
FN3	404	486	4.56e0	SMART
transmembrane domain	530	552	N/A	INTRINSIC
low complexity region	625	639	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000078027

SMART Domains

Protein: ENSMUSP00000077174
Gene: ENSMUSG00000068205

Domain	Start	End	E-Value	Type
low complexity region	6	20	N/A	INTRINSIC
A1pp	71	201	5.72e-45	SMART
low complexity region	266	293	N/A	INTRINSIC
low complexity region	307	319	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000110057
AA Change: R271G

PolyPhen 2 Score 0.528 (Sensitivity: 0.88; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000105684
Gene: ENSMUSG00000051379
AA Change: R271G

Domain	Start	End	E-Value	Type
LRRNT	30	62	3.12e-6	SMART
LRR	82	105	1.03e2	SMART
LRR	127	152	8.26e1	SMART
LRR	156	176	4.58e1	SMART
LRR	198	223	4.09e1	SMART
LRR	224	247	1.33e1	SMART
LRR	248	269	4.2e0	SMART
LRR_TYP	270	293	7.9e-4	SMART
LRRCT	305	356	1.49e-9	SMART
FN3	404	486	4.56e0	SMART
transmembrane domain	530	552	N/A	INTRINSIC
low complexity region	625	639	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000110063

SMART Domains

Protein: ENSMUSP00000105690
Gene: ENSMUSG00000068205

Domain	Start	End	E-Value	Type
low complexity region	6	20	N/A	INTRINSIC
PDB:4IQY\|B	21	107	1e-36	PDB

Predicted Effect

probably benign
Transcript: ENSMUST00000110064

SMART Domains

Protein: ENSMUSP00000105691
Gene: ENSMUSG00000068205

Domain	Start	End	E-Value	Type
low complexity region	6	20	N/A	INTRINSIC
A1pp	71	201	5.72e-45	SMART
low complexity region	266	293	N/A	INTRINSIC
low complexity region	307	319	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000110067

SMART Domains

Protein: ENSMUSP00000105694
Gene: ENSMUSG00000068205

Domain	Start	End	E-Value	Type
low complexity region	6	20	N/A	INTRINSIC
A1pp	71	201	5.72e-45	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the fibronectin leucine rich transmembrane protein (FLRT) family. FLRTs may function in cell adhesion and/or receptor signalling. Their protein structures resemble small leucine-rich proteoglycans found in the extracellular matrix. This gene is expressed in many tissues. Two alternatively spliced transcript variants encoding the same protein have been described for this gene. [provided by RefSeq, Jul 2010]
PHENOTYPE: Mice homozygous for a null allele exhibit embryonic lethality during organogenesis, abnormal embryonic tissue development, disrupted head formation, cardia bifida and abnormal ventral wall closure. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 84 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930596D02Rik	T	C	14: 35,532,134 (GRCm39)	E147G	probably damaging	Het
Agrn	G	A	4: 156,257,094 (GRCm39)	Q1217*	probably null	Het
Ankrd13c	G	C	3: 157,653,313 (GRCm39)	K50N	probably benign	Het
Anks3	C	T	16: 4,775,565 (GRCm39)	S144N	probably damaging	Het
Apob	A	T	12: 8,059,054 (GRCm39)	D2512V	probably damaging	Het
Arhgap45	A	G	10: 79,863,694 (GRCm39)	K815E	probably damaging	Het
Atr	T	A	9: 95,747,098 (GRCm39)	C127S	probably benign	Het
B4galnt4	A	G	7: 140,648,575 (GRCm39)	D697G	probably damaging	Het
C2cd3	C	T	7: 100,029,249 (GRCm39)	L134F	probably damaging	Het
Celsr2	C	T	3: 108,308,915 (GRCm39)	G1697D	probably damaging	Het
Cep170	A	G	1: 176,583,821 (GRCm39)	S88P	possibly damaging	Het
Cnot1	A	G	8: 96,455,874 (GRCm39)	V1961A	probably damaging	Het
Cntnap4	A	G	8: 113,568,349 (GRCm39)	N795S	probably damaging	Het
Cog2	T	A	8: 125,260,125 (GRCm39)	V256D	possibly damaging	Het
Col14a1	A	G	15: 55,382,545 (GRCm39)	Y515C		Het
Cox7a1	A	G	7: 29,884,583 (GRCm39)	Q30R	probably damaging	Het
Cs	T	C	10: 128,196,885 (GRCm39)	S427P	probably damaging	Het
Dbr1	T	A	9: 99,464,523 (GRCm39)	C101S		Het
Dhcr7	C	A	7: 143,401,212 (GRCm39)	Y461*	probably null	Het
Dis3l2	T	A	1: 86,974,784 (GRCm39)	M691K	probably benign	Het
Dnah17	T	C	11: 117,979,804 (GRCm39)	D1751G	probably damaging	Het
Dock10	A	T	1: 80,481,389 (GRCm39)	I536K		Het
Dok6	G	T	18: 89,491,988 (GRCm39)	F196L	possibly damaging	Het
Epx	C	T	11: 87,755,651 (GRCm39)	D678N	probably damaging	Het
Fcrlb	G	C	1: 170,739,735 (GRCm39)	P56A	probably benign	Het
Galnt15	T	A	14: 31,774,301 (GRCm39)	L479Q	probably damaging	Het
Gfy	G	A	7: 44,827,785 (GRCm39)	L104F	probably benign	Het
Gltp	C	T	5: 114,814,382 (GRCm39)	M80I	probably benign	Het
Gm21560	G	A	14: 6,218,250 (GRCm38)	T76I	probably benign	Het
Gm5150	A	G	3: 16,044,829 (GRCm39)	I132T	probably benign	Het
Hdac9	T	C	12: 34,439,389 (GRCm39)	H437R	probably damaging	Het
Hpgd	C	A	8: 56,751,419 (GRCm39)	F82L		Het
Ifi207	GAGTTGCATGTGGAGCCAGGAGGTTGCTAGATGCTGTTGATGAAGTTGCATGTGGAGCCAGGAGGTTGCTAGATGCTGTTGATGAAGTTGCATGTGGAGCCAGGAGGTTGCTAGATGTTGTTGATAGAGTTGCATGTGGAGCCAGGAGACTATTGGATGGTGTTGATAGAGTTGCTTGTGGAGCCAGGAGGTTGCTAGATGCTGTTGATGAAGTTGCATGTGGAGCCAGGAGGTTGCTAGATGTTGTTGATAGAGTTGCATGTGGAGCCAGGAGGTTGCTAGATGTTGTTGATAGAGTTGCATGTGGAGCCAGGAGGTTGCTAGATGCTGTTGATACAGTTGCTTGTGGAGCCAGGAGGTTGCTAGATGCTGTTGAT	GAGTTGCATGTGGAGCCAGGAGGTTGCTAGATGCTGTTGATGAAGTTGCATGTGGAGCCAGGAGGTTGCTAGATGTTGTTGATAGAGTTGCATGTGGAGCCAGGAGACTATTGGATGGTGTTGATAGAGTTGCTTGTGGAGCCAGGAGGTTGCTAGATGCTGTTGATGAAGTTGCATGTGGAGCCAGGAGGTTGCTAGATGTTGTTGATAGAGTTGCATGTGGAGCCAGGAGGTTGCTAGATGTTGTTGATAGAGTTGCATGTGGAGCCAGGAGGTTGCTAGATGCTGTTGATACAGTTGCTTGTGGAGCCAGGAGGTTGCTAGATGCTGTTGAT	1: 173,556,561 (GRCm39)		probably benign	Het
Ilrun	A	T	17: 28,012,913 (GRCm39)	F95I	probably damaging	Het
Itgb5	C	T	16: 33,696,295 (GRCm39)	T162I	probably damaging	Het
Jakmip3	G	A	7: 138,625,118 (GRCm39)		probably null	Het
Kctd1	A	T	18: 15,196,611 (GRCm39)	M4K	unknown	Het
Kirrel1	C	A	3: 87,003,025 (GRCm39)	E123*	probably null	Het
Krt87	G	C	15: 101,389,048 (GRCm39)	P95A	probably benign	Het
Man1a	A	T	10: 53,796,158 (GRCm39)	H511Q	probably damaging	Het
Megf8	A	G	7: 25,043,194 (GRCm39)	D1372G	possibly damaging	Het
Mrgprd	A	G	7: 144,875,189 (GRCm39)	D20G	probably benign	Het
Mrpl54	C	T	10: 81,101,528 (GRCm39)	G78S	probably damaging	Het
Myl1	T	A	1: 66,969,448 (GRCm39)	E61D	probably benign	Het
Myo7a	G	T	7: 97,712,937 (GRCm39)	H1679Q	probably benign	Het
Naca	A	G	10: 127,878,226 (GRCm39)	E1086G	unknown	Het
Nagpa	C	G	16: 5,017,829 (GRCm39)	D258H	probably damaging	Het
Nicn1	C	T	9: 108,171,708 (GRCm39)	R163C	possibly damaging	Het
Nr2f6	G	A	8: 71,827,171 (GRCm39)	L377F	probably damaging	Het
Ntsr1	G	A	2: 180,183,274 (GRCm39)	R328H	probably damaging	Het
Nup93	G	A	8: 95,033,267 (GRCm39)	S592N	probably damaging	Het
Or10a2	A	T	7: 106,673,164 (GRCm39)	N43I	probably damaging	Het
Or4k40	T	A	2: 111,251,137 (GRCm39)	H53L	probably benign	Het
Or8g36	T	C	9: 39,422,497 (GRCm39)	D173G	probably benign	Het
Pard3	T	C	8: 128,136,153 (GRCm39)	V842A	possibly damaging	Het
Phospho2	T	A	2: 69,626,295 (GRCm39)	N150K	probably damaging	Het
Piwil1	T	C	5: 128,831,051 (GRCm39)	S791P	probably damaging	Het
Pkhd1	A	G	1: 20,462,437 (GRCm39)	V2039A	possibly damaging	Het
Ppp1r3c	A	G	19: 36,711,404 (GRCm39)	I122T	probably benign	Het
Prrc2c	A	G	1: 162,519,959 (GRCm39)	Y2131H	possibly damaging	Het
Qtrt2	T	C	16: 43,683,540 (GRCm39)	M311V	possibly damaging	Het
Rbbp4	T	C	4: 129,212,243 (GRCm39)	D346G	probably damaging	Het
Slc13a5	A	G	11: 72,138,578 (GRCm39)	I455T	probably damaging	Het
Slc28a3	A	T	13: 58,717,187 (GRCm39)	Y366*	probably null	Het
Srgap1	T	A	10: 121,705,746 (GRCm39)	Q226L	probably benign	Het
Syt17	A	G	7: 118,007,379 (GRCm39)	V362A	probably damaging	Het
Tas2r117	T	C	6: 132,780,374 (GRCm39)	S171P	probably benign	Het
Tfap2b	A	T	1: 19,289,468 (GRCm39)	I198F	probably damaging	Het
Tg	A	T	15: 66,555,587 (GRCm39)	I760F	possibly damaging	Het
Tmem123	T	C	9: 7,790,984 (GRCm39)	V95A	possibly damaging	Het
Tmem198b	C	A	10: 128,638,386 (GRCm39)	G59V	probably damaging	Het
Tmem30c	T	G	16: 57,096,585 (GRCm39)	I179L	probably benign	Het
Tmprss2	A	T	16: 97,369,702 (GRCm39)	D357E	probably benign	Het
Tns3	G	A	11: 8,401,142 (GRCm39)	T1052M	possibly damaging	Het
Trex1	A	T	9: 108,887,632 (GRCm39)	C120S	probably damaging	Het
Ttc8	A	G	12: 98,886,965 (GRCm39)	S13G	possibly damaging	Het
Ttll7	T	C	3: 146,621,487 (GRCm39)	I362T	probably damaging	Het
Usp34	A	T	11: 23,314,364 (GRCm39)	T769S		Het
Vmn1r185	G	T	7: 26,311,439 (GRCm39)	T22K	probably damaging	Het
Vmn1r39	T	G	6: 66,781,578 (GRCm39)	M247L	probably benign	Het
Vmn2r96	A	G	17: 18,803,257 (GRCm39)	D389G	probably benign	Het
Xirp1	C	T	9: 119,846,379 (GRCm39)	V835I	probably benign	Het
Ylpm1	T	G	12: 85,044,036 (GRCm39)	I258S	unknown	Het
Zfp971	A	T	2: 177,675,417 (GRCm39)	S339C	probably damaging	Het

Other mutations in Flrt3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02141:Flrt3	APN	2	140,502,608 (GRCm39)	missense	probably damaging	0.99
IGL02292:Flrt3	APN	2	140,502,045 (GRCm39)	missense	probably damaging	1.00
R0030:Flrt3	UTSW	2	140,502,237 (GRCm39)	missense	probably damaging	1.00
R1487:Flrt3	UTSW	2	140,502,854 (GRCm39)	missense	probably damaging	1.00
R2061:Flrt3	UTSW	2	140,503,373 (GRCm39)	missense	probably damaging	1.00
R2115:Flrt3	UTSW	2	140,503,423 (GRCm39)	missense	probably damaging	1.00
R2326:Flrt3	UTSW	2	140,503,311 (GRCm39)	missense	possibly damaging	0.50
R3113:Flrt3	UTSW	2	140,503,454 (GRCm39)	missense	probably benign	0.03
R3605:Flrt3	UTSW	2	140,503,287 (GRCm39)	missense	probably damaging	1.00
R4366:Flrt3	UTSW	2	140,502,327 (GRCm39)	missense	probably damaging	0.99
R4702:Flrt3	UTSW	2	140,503,575 (GRCm39)	missense	probably benign
R4799:Flrt3	UTSW	2	140,502,086 (GRCm39)	missense	probably damaging	1.00
R5085:Flrt3	UTSW	2	140,502,177 (GRCm39)	missense	probably damaging	0.99
R5100:Flrt3	UTSW	2	140,513,304 (GRCm39)	start gained	probably null
R5109:Flrt3	UTSW	2	140,502,663 (GRCm39)	missense	possibly damaging	0.51
R5635:Flrt3	UTSW	2	140,502,420 (GRCm39)	missense	probably damaging	1.00
R5982:Flrt3	UTSW	2	140,502,836 (GRCm39)	missense	possibly damaging	0.95
R6117:Flrt3	UTSW	2	140,502,365 (GRCm39)	missense	possibly damaging	0.46
R6213:Flrt3	UTSW	2	140,503,085 (GRCm39)	missense	probably damaging	1.00
R6246:Flrt3	UTSW	2	140,501,721 (GRCm39)	missense	probably damaging	1.00
R6746:Flrt3	UTSW	2	140,501,945 (GRCm39)	missense	probably damaging	0.99
R6854:Flrt3	UTSW	2	140,502,638 (GRCm39)	missense	probably damaging	1.00
R7000:Flrt3	UTSW	2	140,502,804 (GRCm39)	nonsense	probably null
R7221:Flrt3	UTSW	2	140,503,090 (GRCm39)	missense	probably damaging	0.99
R7388:Flrt3	UTSW	2	140,503,672 (GRCm39)	critical splice acceptor site	probably null
R7444:Flrt3	UTSW	2	140,502,387 (GRCm39)	missense	probably benign	0.00
R7526:Flrt3	UTSW	2	140,502,126 (GRCm39)	missense	probably damaging	1.00
R7967:Flrt3	UTSW	2	140,501,811 (GRCm39)	nonsense	probably null
R8272:Flrt3	UTSW	2	140,502,617 (GRCm39)	missense	probably damaging	1.00
R8441:Flrt3	UTSW	2	140,502,546 (GRCm39)	missense	probably benign	0.00
R9109:Flrt3	UTSW	2	140,501,879 (GRCm39)	missense	probably damaging	1.00
R9257:Flrt3	UTSW	2	140,502,159 (GRCm39)	missense	probably benign
R9298:Flrt3	UTSW	2	140,501,879 (GRCm39)	missense	probably damaging	1.00
R9482:Flrt3	UTSW	2	140,503,590 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- CACATTGACCTTCACCGGTAGC -3'
(R):5'- TGGTCTCACAAGCCTGAAAC -3'

Sequencing Primer
(F):5'- TTCACCGGTAGCGACTGTAAC -3'
(R):5'- ACGCCTGGTTTTAGATGGAAAC -3'

Posted On

2022-09-12