Mutagenetix > Incidental Mutation

Incidental Mutation 'R9631:Ttc38'

725528

Institutional Source

Beutler Lab

Gene Symbol

Ttc38

Ensembl Gene

ENSMUSG00000035944

Gene Name

tetratricopeptide repeat domain 38

Synonyms

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.070) question?

Stock #

R9631 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

85716545-85743023 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 85728659 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 204 (S204P)

Ref Sequence

ENSEMBL: ENSMUSP00000114504 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000124011] [ENSMUST00000146088]

AlphaFold

A3KMP2

Predicted Effect

probably benign
Transcript: ENSMUST00000124011

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133158

Predicted Effect

possibly damaging
Transcript: ENSMUST00000146088
AA Change: S204P

PolyPhen 2 Score 0.867 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000114504
Gene: ENSMUSG00000035944
AA Change: S204P

Domain	Start	End	E-Value	Type
SCOP:d1ld8a_	105	272	1e-7	SMART
low complexity region	342	354	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Atl3	A	G	19: 7,509,553 (GRCm39)	N427S	probably benign	Het
Bcar3	T	A	3: 122,301,801 (GRCm39)	D165E	possibly damaging	Het
Brap	T	C	5: 121,822,435 (GRCm39)	I437T	probably benign	Het
Bspry	T	C	4: 62,400,955 (GRCm39)		probably null	Het
Camkv	G	T	9: 107,822,990 (GRCm39)	V77L	probably benign	Het
Capn15	A	T	17: 26,182,409 (GRCm39)	D566E	probably damaging	Het
Ccar2	A	G	14: 70,389,344 (GRCm39)	V76A	probably damaging	Het
Ccdc142	T	C	6: 83,084,142 (GRCm39)	C516R	probably benign	Het
Ccdc92b	T	A	11: 74,520,845 (GRCm39)	V49E		Het
Ccr7	A	G	11: 99,036,616 (GRCm39)	V102A	probably benign	Het
Cdh23	A	T	10: 60,243,168 (GRCm39)	V1069E	possibly damaging	Het
Cimip2c	A	G	5: 30,639,529 (GRCm39)	D152G		Het
Clpb	T	G	7: 101,434,605 (GRCm39)	V467G	possibly damaging	Het
Crebzf	T	A	7: 90,093,013 (GRCm39)	L264Q	probably damaging	Het
Ctif	A	G	18: 75,605,025 (GRCm39)	F505L	probably benign	Het
Cyp2j5	A	G	4: 96,529,522 (GRCm39)	I283T	probably benign	Het
Ddx39a	C	A	8: 84,447,729 (GRCm39)	H191Q	possibly damaging	Het
Dnajc9	A	T	14: 20,438,670 (GRCm39)		probably null	Het
Dock7	A	G	4: 98,854,560 (GRCm39)	L1568P	unknown	Het
Dpp10	T	C	1: 123,269,432 (GRCm39)	Y659C	probably damaging	Het
Eef1akmt3	A	G	10: 126,877,161 (GRCm39)	F35L	probably benign	Het
Etl4	A	T	2: 20,666,749 (GRCm39)	N52I	probably benign	Het
F5	T	A	1: 164,014,423 (GRCm39)	C565S	probably damaging	Het
Fam170b	T	C	14: 32,557,641 (GRCm39)	S159P	probably damaging	Het
Fitm2	A	G	2: 163,311,757 (GRCm39)	I152T	probably damaging	Het
Fn1	T	C	1: 71,625,387 (GRCm39)	D2473G	probably benign	Het
Fzd2	C	A	11: 102,496,916 (GRCm39)	D453E	probably benign	Het
Grm5	T	C	7: 87,624,560 (GRCm39)	Y376H	probably damaging	Het
H2-Q6	T	A	17: 35,644,292 (GRCm39)	H91Q	probably benign	Het
Hspa4	A	T	11: 53,160,582 (GRCm39)	V498E	possibly damaging	Het
Igsf10	A	T	3: 59,237,904 (GRCm39)	L759H	probably damaging	Het
Jph1	T	C	1: 17,161,607 (GRCm39)	T352A	probably damaging	Het
Kit	C	T	5: 75,767,689 (GRCm39)	T24M	possibly damaging	Het
Krtap28-13	T	G	1: 83,038,897 (GRCm39)	C61G	unknown	Het
Lgr5	T	A	10: 115,302,513 (GRCm39)	I293F	probably damaging	Het
Lyzl4	GGACACACTGCAGAGGGAGTGGAGAGAAAGGGACCCACCAGTGCAAGACACACTGCAGAGGGAGTGGAGAGAAAGGGACCCACCAGTGCAGGACACACTGCAGAGG	GGACACACTGCAGAGGGAGTGGAGAGAAAGGGACCCACCAGTGCAGGACACACTGCAGAGG	9: 121,413,055 (GRCm39)		probably null	Het
Mccc1	C	A	3: 36,014,185 (GRCm39)	E711*	probably null	Het
Mroh2b	C	T	15: 4,946,556 (GRCm39)	T452I	probably damaging	Het
Ms4a10	G	A	19: 10,944,451 (GRCm39)	T111I	probably damaging	Het
Myh11	A	T	16: 14,025,441 (GRCm39)	V1443E		Het
Oc90	A	G	15: 65,769,629 (GRCm39)	L76P	probably damaging	Het
Or10d3	G	A	9: 39,461,508 (GRCm39)	R220*	probably null	Het
Or4c118	T	C	2: 88,975,522 (GRCm39)		probably benign	Het
Or4f57	A	G	2: 111,791,377 (GRCm39)	F14L	probably benign	Het
Or56a42-ps1	A	T	7: 104,775,607 (GRCm39)	I290N	probably damaging	Het
Or5b97	A	G	19: 12,878,502 (GRCm39)	V214A	possibly damaging	Het
Or8b57	A	G	9: 40,004,223 (GRCm39)	V13A	probably damaging	Het
Or8c10	G	A	9: 38,279,714 (GRCm39)	V281M	possibly damaging	Het
Or8g52	A	T	9: 39,631,161 (GRCm39)	T213S	possibly damaging	Het
Pgr	C	A	9: 8,900,847 (GRCm39)	Q127K	probably benign	Het
Qrich2	GCTGCACCTGGTTGCAACACACCAGGCTGAACTGCACCTGGTTGCAACACACCAGGCTGAACTGCACCTGGTTGCAACACACCAGGCTGAACTGCACCTGGTTG	GCTGCACCTGGTTGCAACACACCAGGCTGAACTGCACCTGGTTGCAACACACCAGGCTGAACTGCACCTGGTTG	11: 116,348,367 (GRCm39)		probably benign	Het
Rfc1	C	T	5: 65,429,851 (GRCm39)	V852M	probably damaging	Het
Rin2	T	A	2: 145,718,437 (GRCm39)	L639H	probably damaging	Het
Rpap2	T	A	5: 107,768,292 (GRCm39)	W377R	probably damaging	Het
Senp7	T	C	16: 55,975,631 (GRCm39)	S446P	probably benign	Het
Sipa1l1	A	G	12: 82,387,776 (GRCm39)	M1V	probably null	Het
Slc25a36	A	C	9: 96,982,153 (GRCm39)	S61A	probably benign	Het
Sptbn2	C	T	19: 4,788,218 (GRCm39)	R1066W	probably damaging	Het
Tgm6	A	G	2: 129,977,810 (GRCm39)	S50G	probably benign	Het
Thada	T	C	17: 84,538,584 (GRCm39)	S1475G	probably benign	Het
Tln1	G	A	4: 43,545,694 (GRCm39)	A928V	probably damaging	Het
Trip11	G	A	12: 101,859,807 (GRCm39)	L357F	probably benign	Het
Ttc3	G	T	16: 94,171,581 (GRCm39)		probably benign	Het
Vmn1r237	A	T	17: 21,534,660 (GRCm39)	I128F	probably benign	Het
Vmn2r50	A	T	7: 9,786,990 (GRCm39)	L39*	probably null	Het
Vps4b	A	G	1: 106,707,835 (GRCm39)	V216A	possibly damaging	Het
Zfp217	T	C	2: 169,956,790 (GRCm39)	N736S	possibly damaging	Het
Zfp985	A	G	4: 147,665,742 (GRCm39)	E25G	probably damaging	Het
Zfr	C	T	15: 12,154,628 (GRCm39)	R604*	probably null	Het
Zscan18	A	G	7: 12,505,657 (GRCm39)	S577P	possibly damaging	Het

Other mutations in Ttc38

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00899:Ttc38	APN	15	85,728,663 (GRCm39)	missense	possibly damaging	0.76
IGL01596:Ttc38	APN	15	85,720,274 (GRCm39)	missense	possibly damaging	0.89
IGL03221:Ttc38	APN	15	85,718,742 (GRCm39)	missense	probably benign	0.00
hairy	UTSW	15	85,735,802 (GRCm39)	splice site	probably null
Stubble	UTSW	15	85,728,716 (GRCm39)	nonsense	probably null
PIT4431001:Ttc38	UTSW	15	85,720,328 (GRCm39)	missense	probably benign
R0040:Ttc38	UTSW	15	85,725,690 (GRCm39)	missense	probably damaging	1.00
R0040:Ttc38	UTSW	15	85,725,690 (GRCm39)	missense	probably damaging	1.00
R0081:Ttc38	UTSW	15	85,740,673 (GRCm39)	missense	probably benign	0.04
R0143:Ttc38	UTSW	15	85,737,920 (GRCm39)	missense	possibly damaging	0.51
R0764:Ttc38	UTSW	15	85,730,604 (GRCm39)	splice site	probably benign
R1745:Ttc38	UTSW	15	85,717,373 (GRCm39)	missense	probably damaging	1.00
R1837:Ttc38	UTSW	15	85,735,764 (GRCm39)	missense	probably damaging	1.00
R2069:Ttc38	UTSW	15	85,722,989 (GRCm39)	missense	probably damaging	1.00
R2086:Ttc38	UTSW	15	85,722,928 (GRCm39)	missense	probably benign
R2151:Ttc38	UTSW	15	85,735,802 (GRCm39)	splice site	probably null
R2228:Ttc38	UTSW	15	85,728,704 (GRCm39)	missense	probably benign	0.01
R4641:Ttc38	UTSW	15	85,728,659 (GRCm39)	missense	possibly damaging	0.87
R4705:Ttc38	UTSW	15	85,737,164 (GRCm39)	missense	probably benign	0.00
R4721:Ttc38	UTSW	15	85,722,947 (GRCm39)	missense	probably benign
R5037:Ttc38	UTSW	15	85,728,741 (GRCm39)	missense	probably benign	0.16
R6208:Ttc38	UTSW	15	85,725,698 (GRCm39)	missense	possibly damaging	0.56
R6454:Ttc38	UTSW	15	85,723,023 (GRCm39)	missense	probably damaging	1.00
R7326:Ttc38	UTSW	15	85,737,062 (GRCm39)	missense	probably benign	0.00
R7809:Ttc38	UTSW	15	85,722,939 (GRCm39)	missense	possibly damaging	0.65
R8195:Ttc38	UTSW	15	85,728,716 (GRCm39)	nonsense	probably null
R9042:Ttc38	UTSW	15	85,720,310 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- TGTTCTCCTTAGCAATGTGCCG -3'
(R):5'- TGTAAAGCCCACCGAGCAAG -3'

Sequencing Primer
(F):5'- CGTGGTGGGCAAACACATC -3'
(R):5'- CAAGCCTTGGGGGAAACTC -3'

Posted On

2022-09-12