Mutagenetix > Incidental Mutation

Incidental Mutation 'R9640:Jam2'

725942

Institutional Source

Beutler Lab

Gene Symbol

Jam2

Ensembl Gene

ENSMUSG00000053062

Gene Name

junction adhesion molecule 2

Synonyms

JAM-2, 2410030G21Rik, Jcam2, 2410167M24Rik, VE-JAM

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9640 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

84571011-84622816 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 84609960 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Serine at position 191 (T191S)

Ref Sequence

ENSEMBL: ENSMUSP00000109833 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000098407] [ENSMUST00000114195] [ENSMUST00000231910]

AlphaFold

Q9JI59

Predicted Effect

probably benign
Transcript: ENSMUST00000098407

SMART Domains

Protein: ENSMUSP00000096007
Gene: ENSMUSG00000053062

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
IG	36	132	7.7e-5	SMART
low complexity region	170	180	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000114195
AA Change: T191S

PolyPhen 2 Score 0.124 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000109833
Gene: ENSMUSG00000053062
AA Change: T191S

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
IG	36	132	7.7e-5	SMART
IGc2	147	221	1.06e-11	SMART
low complexity region	240	253	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000231910
AA Change: T215S

PolyPhen 2 Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene belongs to the immunoglobulin superfamily, and the junctional adhesion molecule (JAM) family. The protein encoded by this gene is a type I membrane protein that is localized at the tight junctions of both epithelial and endothelial cells. It acts as an adhesive ligand for interacting with a variety of immune cell types, and may play a role in lymphocyte homing to secondary lymphoid organs. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jul 2012]
PHENOTYPE: Mice homozygous for a knock-out allele are viable, fertile and overtly normal with no detectable spermatogenesis abnormalities or defects in embryonic, neural and hematopoietic stem cell properties. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A630010A05Rik	T	C	16: 14,436,589 (GRCm39)	V214A		Het
A830018L16Rik	A	G	1: 12,021,200 (GRCm39)	K403R	probably damaging	Het
Aadacl4fm4	T	A	4: 144,412,809 (GRCm39)	R44W	possibly damaging	Het
Abhd17c	A	T	7: 83,800,814 (GRCm39)	L80Q	probably damaging	Het
Adam30	T	A	3: 98,069,620 (GRCm39)	D484E	probably damaging	Het
Aspm	T	A	1: 139,408,010 (GRCm39)	V2299E	possibly damaging	Het
Atp6v1c1	C	T	15: 38,689,381 (GRCm39)	R281W	probably damaging	Het
Bclaf1	T	C	10: 20,201,553 (GRCm39)		probably null	Het
Ccdc50	T	C	16: 27,225,461 (GRCm39)	V58A	probably damaging	Het
Cep162	A	G	9: 87,126,352 (GRCm39)	S187P	probably benign	Het
Clip4	C	T	17: 72,163,264 (GRCm39)	T612M	possibly damaging	Het
Corin	C	T	5: 72,592,597 (GRCm39)	V267I	probably benign	Het
Cyp2c37	T	A	19: 40,000,180 (GRCm39)	I434K	probably benign	Het
Ddx43	T	G	9: 78,303,389 (GRCm39)	D76E	probably benign	Het
Dusp5	A	G	19: 53,526,051 (GRCm39)	E231G	probably damaging	Het
Fam114a1	G	A	5: 65,166,394 (GRCm39)	V242I	probably damaging	Het
Frem1	T	A	4: 82,831,896 (GRCm39)	R1973S	probably benign	Het
Gas2l3	A	T	10: 89,266,774 (GRCm39)	D55E	probably damaging	Het
Grwd1	T	C	7: 45,477,303 (GRCm39)	I195V	probably benign	Het
H2-M1	G	T	17: 36,983,031 (GRCm39)	T20K	probably benign	Het
H2-Q2	T	G	17: 35,562,206 (GRCm39)	L151R	probably damaging	Het
Hbegf	T	C	18: 36,640,643 (GRCm39)	Y138C	probably damaging	Het
Hectd1	C	A	12: 51,795,197 (GRCm39)	E2411*	probably null	Het
Igkv11-125	T	A	6: 67,890,783 (GRCm39)	S34T	possibly damaging	Het
Kcnh8	T	C	17: 53,185,089 (GRCm39)	I457T	probably damaging	Het
Khk	A	G	5: 31,079,303 (GRCm39)	D15G	probably damaging	Het
Lrba	T	A	3: 86,526,875 (GRCm39)	Y2244*	probably null	Het
Lrp1b	T	C	2: 41,078,929 (GRCm39)	N1841S		Het
Lrp4	A	G	2: 91,316,296 (GRCm39)	T805A	probably benign	Het
Lrp6	C	T	6: 134,441,414 (GRCm39)	R1184Q	probably damaging	Het
Map3k1	A	T	13: 111,900,699 (GRCm39)	L442*	probably null	Het
Mapk8ip3	T	C	17: 25,155,647 (GRCm39)	N61S	possibly damaging	Het
Matcap2	A	T	9: 22,351,228 (GRCm39)	I457L	possibly damaging	Het
Mdn1	T	A	4: 32,754,539 (GRCm39)	V4685E	probably damaging	Het
Mib2	T	C	4: 155,745,325 (GRCm39)	E134G	possibly damaging	Het
Mtss2	T	C	8: 111,464,575 (GRCm39)	V403A	probably benign	Het
Ndst4	C	A	3: 125,232,196 (GRCm39)	T255K	probably damaging	Het
Or1i2	G	C	10: 78,448,311 (GRCm39)	L55V	probably damaging	Het
Or2l13	A	T	16: 19,305,761 (GRCm39)	M58L	probably damaging	Het
Or5ae2	G	A	7: 84,506,114 (GRCm39)	C181Y	probably damaging	Het
Or8g20	A	G	9: 39,396,396 (GRCm39)	L51P	probably damaging	Het
Pak1	T	A	7: 97,515,355 (GRCm39)	D126E	probably benign	Het
Rgl1	T	C	1: 152,397,142 (GRCm39)	T675A	probably damaging	Het
Rgs1	T	C	1: 144,121,116 (GRCm39)	D185G	probably damaging	Het
Rnase2a	G	A	14: 51,493,117 (GRCm39)	R83C	probably damaging	Het
Sfmbt2	A	G	2: 10,583,994 (GRCm39)	T784A	probably damaging	Het
Slc6a21	A	T	7: 44,937,189 (GRCm39)	T272S		Het
Sorcs2	G	T	5: 36,222,765 (GRCm39)	S330*	probably null	Het
Spdef	G	T	17: 27,936,183 (GRCm39)	H253Q		Het
Tas2r144	A	G	6: 42,192,428 (GRCm39)	E56G	probably benign	Het
Trim66	A	G	7: 109,074,825 (GRCm39)	C479R	probably damaging	Het
Ttc36	A	T	9: 44,714,034 (GRCm39)	L28Q	probably benign	Het
Ugt1a5	T	C	1: 88,094,098 (GRCm39)	S109P	possibly damaging	Het
Vamp5	G	A	6: 72,347,276 (GRCm39)		probably benign	Het
Wwox	A	G	8: 115,166,540 (GRCm39)	D10G	possibly damaging	Het
Zfp40	T	C	17: 23,394,493 (GRCm39)	Y698C	probably damaging	Het
Zfp62	A	G	11: 49,106,458 (GRCm39)	D183G	probably benign	Het
Zfp932	T	C	5: 110,157,064 (GRCm39)	V254A	probably benign	Het
Zfp943	T	A	17: 22,209,899 (GRCm39)	L57H	probably damaging	Het

Other mutations in Jam2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00568:Jam2	APN	16	84,619,712 (GRCm39)	utr 3 prime	probably benign
IGL00805:Jam2	APN	16	84,612,054 (GRCm39)	splice site	probably benign
R0834:Jam2	UTSW	16	84,609,855 (GRCm39)	missense	probably damaging	1.00
R1188:Jam2	UTSW	16	84,603,755 (GRCm39)	missense	probably damaging	0.99
R4230:Jam2	UTSW	16	84,618,180 (GRCm39)	missense	possibly damaging	0.92
R4323:Jam2	UTSW	16	84,619,744 (GRCm39)	utr 3 prime	probably benign
R4659:Jam2	UTSW	16	84,609,840 (GRCm39)	missense	probably damaging	0.96
R4660:Jam2	UTSW	16	84,609,840 (GRCm39)	missense	probably damaging	0.96
R4662:Jam2	UTSW	16	84,609,840 (GRCm39)	missense	probably damaging	0.96
R4679:Jam2	UTSW	16	84,609,840 (GRCm39)	missense	probably damaging	0.96
R4741:Jam2	UTSW	16	84,609,840 (GRCm39)	missense	probably damaging	0.96
R4856:Jam2	UTSW	16	84,598,490 (GRCm39)	missense	probably benign	0.39
R4929:Jam2	UTSW	16	84,619,750 (GRCm39)	utr 3 prime	probably benign
R4961:Jam2	UTSW	16	84,606,435 (GRCm39)	nonsense	probably null
R5915:Jam2	UTSW	16	84,606,295 (GRCm39)	missense	probably benign	0.01
R7779:Jam2	UTSW	16	84,606,271 (GRCm39)	missense	probably damaging	1.00
R8790:Jam2	UTSW	16	84,606,259 (GRCm39)	missense	possibly damaging	0.87
R9488:Jam2	UTSW	16	84,619,676 (GRCm39)	missense	probably damaging	1.00
R9785:Jam2	UTSW	16	84,571,397 (GRCm39)	missense	unknown

Predicted Primers

PCR Primer
(F):5'- TGGCTTCCATTGTCCAGTGG -3'
(R):5'- CCACAGTAAGTAGTCTGTTCCATC -3'

Sequencing Primer
(F):5'- ATTGTCCAGTGGCTCCTGCTG -3'
(R):5'- CAGTAAGTAGTCTGTTCCATCATGTC -3'

Posted On

2022-09-12