Mutagenetix > Incidental Mutation

Incidental Mutation 'R9617:Lrrtm2'

726553

Institutional Source

Beutler Lab

Gene Symbol

Lrrtm2

Ensembl Gene

ENSMUSG00000071862

Gene Name

leucine rich repeat transmembrane neuronal 2

Synonyms

C630011A14Rik

MMRRC Submission

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R9617 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

35342056-35348077 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 35346490 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 271 (T271A)

Ref Sequence

ENSEMBL: ENSMUSP00000089225 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000042345] [ENSMUST00000091636]

AlphaFold

Q8BGA3

Predicted Effect

probably benign
Transcript: ENSMUST00000042345

SMART Domains

Protein: ENSMUSP00000049007
Gene: ENSMUSG00000037815

Domain	Start	End	E-Value	Type
Pfam:Vinculin	19	339	2.6e-99	PFAM
Pfam:Vinculin	333	867	3.3e-218	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000091636
AA Change: T271A

PolyPhen 2 Score 0.411 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000089225
Gene: ENSMUSG00000071862
AA Change: T271A

Domain	Start	End	E-Value	Type
LRRNT	33	61	2.45e0	SMART
LRR_TYP	84	107	5.14e-3	SMART
LRR_TYP	108	131	3.58e-2	SMART
LRR_TYP	132	155	1.6e-4	SMART
LRR_TYP	156	179	4.24e-4	SMART
LRR	180	203	1.14e0	SMART
LRR	204	224	6.05e0	SMART
LRR	228	251	5.12e1	SMART
LRR	252	275	1.97e2	SMART
LRR	276	299	2.45e0	SMART
Blast:LRRCT	311	360	2e-11	BLAST
transmembrane domain	422	444	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110032F04Rik	C	T	3: 68,777,402 (GRCm39)	P121L	probably damaging	Het
4930442H23Rik	C	T	10: 81,018,976 (GRCm39)	V16I	unknown	Het
4930444P10Rik	T	C	1: 16,139,051 (GRCm39)	M97V	probably benign	Het
Abcb1a	A	T	5: 8,797,353 (GRCm39)		probably null	Het
Abhd5	T	C	9: 122,197,035 (GRCm39)	I74T	probably benign	Het
Ankle2	T	A	5: 110,399,409 (GRCm39)	F590I	probably damaging	Het
C2cd6	T	C	1: 59,097,848 (GRCm39)	S414G	probably benign	Het
Catsperd	G	A	17: 56,968,252 (GRCm39)	D546N	probably benign	Het
Cep295nl	G	T	11: 118,224,000 (GRCm39)	H281Q	possibly damaging	Het
Cfap69	T	C	5: 5,639,164 (GRCm39)	E670G	probably damaging	Het
Cfh	A	T	1: 140,090,718 (GRCm39)	V90E	possibly damaging	Het
Cnksr3	A	C	10: 7,079,021 (GRCm39)		probably null	Het
Cntrl	T	A	2: 35,035,077 (GRCm39)	F901L	probably benign	Het
Coch	T	A	12: 51,645,034 (GRCm39)	M196K	probably damaging	Het
Crygd	T	C	1: 65,102,369 (GRCm39)	N34S	probably damaging	Het
Ctdp1	A	T	18: 80,492,962 (GRCm39)	I511N	probably benign	Het
Dhx30	C	T	9: 109,926,186 (GRCm39)	A142T	probably damaging	Het
Dlg2	T	C	7: 92,087,284 (GRCm39)		probably null	Het
Dmxl1	A	G	18: 49,998,228 (GRCm39)	D776G	probably damaging	Het
Dnm3	C	T	1: 162,149,354 (GRCm39)	G197D	probably damaging	Het
Eif4g3	A	G	4: 137,824,190 (GRCm39)	H91R	probably damaging	Het
Ephb6	A	G	6: 41,596,258 (GRCm39)	M844V	probably damaging	Het
Erc1	T	C	6: 119,773,902 (GRCm39)	E351G	probably benign	Het
Etfbkmt	G	A	6: 149,045,744 (GRCm39)	G33R	probably benign	Het
Fnbp4	T	C	2: 90,588,738 (GRCm39)	I503T	probably benign	Het
Gm6370	A	T	5: 146,429,993 (GRCm39)	Q143L	probably benign	Het
Gnas	T	C	2: 174,141,988 (GRCm39)	V719A	possibly damaging	Het
H13	C	A	2: 152,530,873 (GRCm39)	D219E	probably damaging	Het
Hhatl	G	A	9: 121,618,191 (GRCm39)	T188I	possibly damaging	Het
Ifi27l2b	C	T	12: 103,422,683 (GRCm39)	A45T	probably damaging	Het
Kbtbd8	T	C	6: 95,103,874 (GRCm39)	C585R	possibly damaging	Het
Limk2	A	G	11: 3,297,715 (GRCm39)	S473P	probably damaging	Het
Lrba	G	A	3: 86,267,169 (GRCm39)	G1620S	probably benign	Het
Map3k4	A	G	17: 12,476,871 (GRCm39)	S759P	possibly damaging	Het
Mybphl	G	T	3: 108,282,952 (GRCm39)	V247F	possibly damaging	Het
Myh10	T	A	11: 68,682,815 (GRCm39)	V1120D	probably benign	Het
Naip1	T	C	13: 100,569,821 (GRCm39)	N271S	probably benign	Het
Napepld	C	T	5: 21,875,561 (GRCm39)	V328I	probably damaging	Het
Nucb1	A	G	7: 45,148,159 (GRCm39)	V218A	probably benign	Het
Nup107	A	T	10: 117,593,238 (GRCm39)	D813E	probably benign	Het
Or14j3	T	A	17: 37,901,053 (GRCm39)	K64*	probably null	Het
Or5g29	T	A	2: 85,421,279 (GRCm39)	Y132N	probably damaging	Het
Or6c35	A	T	10: 129,168,794 (GRCm39)	T15S	probably damaging	Het
Or8g52	A	G	9: 39,630,678 (GRCm39)	S52G	possibly damaging	Het
Pabpc2	T	C	18: 39,907,602 (GRCm39)	I289T	probably benign	Het
Parg	A	G	14: 31,960,569 (GRCm39)	I600V	probably benign	Het
Patj	T	C	4: 98,393,991 (GRCm39)	F975L	probably benign	Het
Pcdhb17	A	G	18: 37,618,218 (GRCm39)	T3A	probably benign	Het
Piezo2	T	C	18: 63,248,108 (GRCm39)	E464G	probably benign	Het
Pkd1	T	A	17: 24,800,341 (GRCm39)	V3034D	probably damaging	Het
Pld2	A	G	11: 70,447,944 (GRCm39)	E869G	probably damaging	Het
Plek	T	A	11: 16,945,311 (GRCm39)	L29F	possibly damaging	Het
Prelp	A	G	1: 133,842,416 (GRCm39)	L243P	probably damaging	Het
Rapgef5	T	A	12: 117,621,930 (GRCm39)	D231E	probably benign	Het
Riok1	A	G	13: 38,244,016 (GRCm39)	E514G	probably benign	Het
Rmdn2	T	C	17: 79,928,790 (GRCm39)	M14T	probably benign	Het
Rorb	G	A	19: 18,939,499 (GRCm39)	Q228*	probably null	Het
Scmh1	T	A	4: 120,340,827 (GRCm39)	M171K	probably damaging	Het
Scn9a	A	G	2: 66,392,809 (GRCm39)	L261P	probably damaging	Het
Senp7	A	T	16: 55,971,652 (GRCm39)	N263I	probably benign	Het
Slc11a1	G	T	1: 74,419,041 (GRCm39)	A162S	probably benign	Het
Slc6a17	A	G	3: 107,384,685 (GRCm39)	V305A	probably damaging	Het
Snph	A	T	2: 151,435,422 (GRCm39)	V502E	probably damaging	Het
Sost	G	T	11: 101,854,892 (GRCm39)	A139E	possibly damaging	Het
Srp54a	A	T	12: 55,136,061 (GRCm39)	E25D	probably benign	Het
Tmeff1	T	A	4: 48,636,940 (GRCm39)	C213S	probably damaging	Het
Tmem232	A	T	17: 65,807,180 (GRCm39)	Y4*	probably null	Het
Tmem63c	T	G	12: 87,103,361 (GRCm39)	I45S	probably benign	Het
Ttbk1	C	T	17: 46,757,998 (GRCm39)	G879S	probably damaging	Het
Ugt1a7c	A	G	1: 88,022,952 (GRCm39)	H37R	probably damaging	Het
Vmn1r236	T	C	17: 21,507,053 (GRCm39)	L57P	probably damaging	Het
Wnk2	T	A	13: 49,192,453 (GRCm39)	E675V	unknown	Het
Wnt10b	T	C	15: 98,674,609 (GRCm39)	T43A	probably damaging	Het
Wnt8a	C	A	18: 34,680,163 (GRCm39)	T176K	probably benign	Het
Zfp937	T	A	2: 150,080,452 (GRCm39)	C161S	probably damaging	Het

Other mutations in Lrrtm2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00432:Lrrtm2	APN	18	35,346,321 (GRCm39)	missense	probably benign	0.13
IGL00835:Lrrtm2	APN	18	35,347,292 (GRCm39)	missense	probably benign	0.03
IGL01097:Lrrtm2	APN	18	35,345,994 (GRCm39)	missense	probably damaging	1.00
IGL01589:Lrrtm2	APN	18	35,345,851 (GRCm39)	missense	probably damaging	1.00
IGL02106:Lrrtm2	APN	18	35,345,868 (GRCm39)	nonsense	probably null
R0149:Lrrtm2	UTSW	18	35,345,985 (GRCm39)	missense	probably benign	0.28
R0361:Lrrtm2	UTSW	18	35,345,985 (GRCm39)	missense	probably benign	0.28
R0924:Lrrtm2	UTSW	18	35,346,808 (GRCm39)	missense	probably damaging	1.00
R1189:Lrrtm2	UTSW	18	35,346,545 (GRCm39)	nonsense	probably null
R1417:Lrrtm2	UTSW	18	35,347,011 (GRCm39)	missense	probably damaging	1.00
R1585:Lrrtm2	UTSW	18	35,346,428 (GRCm39)	missense	possibly damaging	0.86
R3433:Lrrtm2	UTSW	18	35,346,950 (GRCm39)	missense	probably damaging	1.00
R4019:Lrrtm2	UTSW	18	35,345,923 (GRCm39)	missense	possibly damaging	0.76
R4540:Lrrtm2	UTSW	18	35,346,199 (GRCm39)	missense	probably benign	0.29
R4664:Lrrtm2	UTSW	18	35,347,310 (GRCm39)	splice site	probably null
R4879:Lrrtm2	UTSW	18	35,346,372 (GRCm39)	missense	probably damaging	0.98
R5797:Lrrtm2	UTSW	18	35,346,759 (GRCm39)	missense	probably damaging	1.00
R7378:Lrrtm2	UTSW	18	35,346,645 (GRCm39)	missense	probably damaging	1.00
R7387:Lrrtm2	UTSW	18	35,346,025 (GRCm39)	missense	probably damaging	1.00
R7391:Lrrtm2	UTSW	18	35,345,818 (GRCm39)	missense	possibly damaging	0.75
R7408:Lrrtm2	UTSW	18	35,346,688 (GRCm39)	missense	possibly damaging	0.88
R7584:Lrrtm2	UTSW	18	35,345,818 (GRCm39)	missense	possibly damaging	0.75
R7629:Lrrtm2	UTSW	18	35,347,310 (GRCm39)	splice site	probably null
R8105:Lrrtm2	UTSW	18	35,346,510 (GRCm39)	missense	probably damaging	0.99
R8163:Lrrtm2	UTSW	18	35,346,777 (GRCm39)	missense	probably damaging	1.00
R8490:Lrrtm2	UTSW	18	35,346,451 (GRCm39)	splice site	probably null
R8702:Lrrtm2	UTSW	18	35,346,018 (GRCm39)	missense	probably damaging	1.00
R9513:Lrrtm2	UTSW	18	35,346,687 (GRCm39)	missense	probably damaging	1.00
R9725:Lrrtm2	UTSW	18	35,345,788 (GRCm39)	missense	probably damaging	1.00
Z1176:Lrrtm2	UTSW	18	35,347,712 (GRCm39)	start gained	probably benign

Predicted Primers

PCR Primer
(F):5'- TGGCATAGGATGGAGTGCTC -3'
(R):5'- TCAAACTGAGAGAGCTTCATCTAGAG -3'

Sequencing Primer
(F):5'- GACCTTGGAAACTGCCCAG -3'
(R):5'- GCTTCATCTAGAGCACAATCAGCTG -3'

Posted On

2022-10-06