Incidental Mutation 'IGL01285:Shroom2'
ID 72677
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Shroom2
Ensembl Gene ENSMUSG00000045180
Gene Name shroom family member 2
Synonyms Shrm2, Apxl
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.326) question?
Stock # IGL01285
Quality Score
Status
Chromosome X
Chromosomal Location 151392505-151552461 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 151442353 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glutamic Acid at position 937 (D937E)
Ref Sequence ENSEMBL: ENSMUSP00000057500 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000062317] [ENSMUST00000101141]
AlphaFold A2ALU4
Predicted Effect probably damaging
Transcript: ENSMUST00000062317
AA Change: D937E

PolyPhen 2 Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000057500
Gene: ENSMUSG00000045180
AA Change: D937E

DomainStartEndE-ValueType
low complexity region 4 20 N/A INTRINSIC
PDZ 35 108 1.77e-15 SMART
low complexity region 140 159 N/A INTRINSIC
low complexity region 317 326 N/A INTRINSIC
Pfam:ASD1 661 840 2.4e-76 PFAM
low complexity region 1137 1158 N/A INTRINSIC
Pfam:ASD2 1185 1475 7.8e-116 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000101141
AA Change: D937E

PolyPhen 2 Score 0.030 (Sensitivity: 0.95; Specificity: 0.82)
SMART Domains Protein: ENSMUSP00000098701
Gene: ENSMUSG00000045180
AA Change: D937E

DomainStartEndE-ValueType
low complexity region 4 20 N/A INTRINSIC
PDZ 35 108 1.77e-15 SMART
low complexity region 140 159 N/A INTRINSIC
low complexity region 317 326 N/A INTRINSIC
Pfam:ASD1 662 840 9e-59 PFAM
low complexity region 999 1014 N/A INTRINSIC
low complexity region 1143 1164 N/A INTRINSIC
Pfam:ASD2 1192 1481 1.3e-115 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000152746
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene represents the human homolog of Xenopus laevis apical protein (APX) gene, which is implicated in amiloride-sensitive sodium channel activity. It is expressed in endothelial cells and facilitates the formation of a contractile network within endothelial cells. Depletion of this gene results in an increase in endothelial sprouting, migration, and angiogenesis. This gene is highly expressed in the retina, and is a strong candidate for ocular albinism type 1 syndrome. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Mar 2016]
Allele List at MGI
Other mutations in this stock
Total: 47 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam5 T C 8: 25,271,610 (GRCm39) N599S probably benign Het
Adam6a A T 12: 113,509,893 (GRCm39) *755Y probably null Het
Adgrb3 G T 1: 25,132,868 (GRCm39) T1166K probably benign Het
Ano1 T C 7: 144,198,479 (GRCm39) Y345C probably benign Het
Ano1 A G 7: 144,149,275 (GRCm39) V862A probably damaging Het
Asap2 C T 12: 21,279,264 (GRCm39) A382V probably damaging Het
Asb18 A G 1: 89,923,963 (GRCm39) V100A probably benign Het
Bdnf G A 2: 109,553,931 (GRCm39) A102T probably benign Het
Ccser2 G A 14: 36,660,626 (GRCm39) T509M probably damaging Het
Cfap47 A G X: 78,532,764 (GRCm39) I767T possibly damaging Het
Des G A 1: 75,339,227 (GRCm39) A251T probably benign Het
Dmd C T X: 84,153,590 (GRCm39) Q3224* probably null Het
Endog G T 2: 30,061,975 (GRCm39) probably null Het
Ggt7 A G 2: 155,342,691 (GRCm39) V269A probably damaging Het
Gucy2c A G 6: 136,686,739 (GRCm39) F808S probably damaging Het
Hira A G 16: 18,730,930 (GRCm39) T210A probably benign Het
Ifitm5 C A 7: 140,530,076 (GRCm39) R16L probably benign Het
Igdcc4 T C 9: 65,031,273 (GRCm39) C404R probably damaging Het
Ints7 G A 1: 191,347,890 (GRCm39) R754H probably benign Het
Irf9 A G 14: 55,845,058 (GRCm39) E258G probably damaging Het
Megf11 T C 9: 64,567,728 (GRCm39) C406R probably damaging Het
Olfml1 A G 7: 107,189,364 (GRCm39) N143S possibly damaging Het
Or4m1 A G 14: 50,557,713 (GRCm39) F193S possibly damaging Het
Or6c66b T A 10: 129,376,711 (GRCm39) F102I probably benign Het
Or7g30 A G 9: 19,352,266 (GRCm39) D19G probably benign Het
Otof G T 5: 30,562,527 (GRCm39) Q254K probably damaging Het
Pate7 A T 9: 35,688,044 (GRCm39) N65K possibly damaging Het
Plcd3 A G 11: 102,968,696 (GRCm39) F332L probably benign Het
Plxnc1 T C 10: 94,635,230 (GRCm39) D1332G probably damaging Het
Rnasel A T 1: 153,634,130 (GRCm39) D521V probably benign Het
Sema5a T A 15: 32,575,143 (GRCm39) V417D possibly damaging Het
Senp6 G A 9: 80,044,000 (GRCm39) R877Q probably benign Het
Slc35a3 A G 3: 116,488,262 (GRCm39) S142P probably damaging Het
Srpx A T X: 9,905,298 (GRCm39) V398E probably damaging Het
Stk10 A T 11: 32,560,653 (GRCm39) K669N possibly damaging Het
Sumf2 A G 5: 129,878,811 (GRCm39) D49G probably damaging Het
Syde1 T A 10: 78,424,721 (GRCm39) E370D probably damaging Het
Tas2r115 G T 6: 132,714,641 (GRCm39) S103R probably damaging Het
Top2a G A 11: 98,896,985 (GRCm39) probably benign Het
Ttn T A 2: 76,550,842 (GRCm39) T23190S probably damaging Het
Ttyh3 C A 5: 140,615,167 (GRCm39) C407F probably damaging Het
Vmn2r27 G T 6: 124,169,370 (GRCm39) H587N possibly damaging Het
Vmn2r74 A G 7: 85,606,692 (GRCm39) I218T possibly damaging Het
Vsig10 A G 5: 117,462,954 (GRCm39) N60S probably benign Het
Zc3h7a A G 16: 10,956,979 (GRCm39) S877P probably damaging Het
Zfp979 G T 4: 147,699,853 (GRCm39) T29N probably damaging Het
Znfx1 G A 2: 166,880,615 (GRCm39) R390C possibly damaging Het
Other mutations in Shroom2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00481:Shroom2 APN X 151,406,219 (GRCm39) missense probably benign 0.01
IGL00594:Shroom2 APN X 151,396,512 (GRCm39) missense probably damaging 0.98
IGL02869:Shroom2 APN X 151,442,549 (GRCm39) missense probably benign 0.00
IGL03022:Shroom2 APN X 151,443,089 (GRCm39) missense probably benign 0.08
R2897:Shroom2 UTSW X 151,443,035 (GRCm39) missense probably benign 0.27
R4785:Shroom2 UTSW X 151,443,903 (GRCm39) missense probably benign 0.03
X0050:Shroom2 UTSW X 151,443,466 (GRCm39) nonsense probably null
Z1177:Shroom2 UTSW X 151,443,030 (GRCm39) missense possibly damaging 0.60
Posted On 2013-10-07