Incidental Mutation 'R9648:Atp2b2'
ID 726864
Institutional Source Beutler Lab
Gene Symbol Atp2b2
Ensembl Gene ENSMUSG00000030302
Gene Name ATPase, Ca++ transporting, plasma membrane 2
Synonyms PMCA2, Gena300, wms, D6Abb2e, jog, Tmy
MMRRC Submission
Accession Numbers
Essential gene? Probably essential (E-score: 0.889) question?
Stock # R9648 (G1)
Quality Score 225.009
Status Not validated
Chromosome 6
Chromosomal Location 113720803-114019574 bp(-) (GRCm39)
Type of Mutation critical splice donor site (1 bp from exon)
DNA Base Change (assembly) C to T at 113780707 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000098605 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000089003] [ENSMUST00000101044] [ENSMUST00000101045] [ENSMUST00000152831] [ENSMUST00000205052]
AlphaFold Q9R0K7
Predicted Effect probably benign
Transcript: ENSMUST00000089003
SMART Domains Protein: ENSMUSP00000086398
Gene: ENSMUSG00000030302

DomainStartEndE-ValueType
Cation_ATPase_N 47 123 1.21e-4 SMART
Pfam:E1-E2_ATPase 156 444 1.7e-56 PFAM
Pfam:Hydrolase 448 787 3.9e-25 PFAM
Pfam:HAD 451 784 2.4e-16 PFAM
Pfam:Hydrolase_like2 497 593 9.4e-17 PFAM
Pfam:Hydrolase_3 745 820 1.7e-6 PFAM
transmembrane domain 833 855 N/A INTRINSIC
Pfam:Cation_ATPase_C 857 1039 7.3e-46 PFAM
low complexity region 1057 1070 N/A INTRINSIC
Pfam:ATP_Ca_trans_C 1081 1144 1.4e-31 PFAM
low complexity region 1151 1166 N/A INTRINSIC
low complexity region 1175 1189 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000101044
SMART Domains Protein: ENSMUSP00000098605
Gene: ENSMUSG00000030302

DomainStartEndE-ValueType
Cation_ATPase_N 47 123 1.21e-4 SMART
Pfam:E1-E2_ATPase 155 307 4.2e-28 PFAM
low complexity region 313 330 N/A INTRINSIC
low complexity region 337 356 N/A INTRINSIC
Pfam:E1-E2_ATPase 373 488 1.4e-13 PFAM
Pfam:Hydrolase 493 832 8.1e-16 PFAM
Pfam:HAD 496 829 6.3e-21 PFAM
Pfam:Cation_ATPase 542 638 4.4e-17 PFAM
Pfam:Hydrolase_3 791 865 8.3e-7 PFAM
transmembrane domain 878 900 N/A INTRINSIC
Pfam:Cation_ATPase_C 902 1084 2.5e-47 PFAM
low complexity region 1102 1115 N/A INTRINSIC
Pfam:ATP_Ca_trans_C 1126 1178 2.4e-30 PFAM
low complexity region 1196 1211 N/A INTRINSIC
low complexity region 1220 1234 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000101045
SMART Domains Protein: ENSMUSP00000098606
Gene: ENSMUSG00000030302

DomainStartEndE-ValueType
Cation_ATPase_N 47 123 1.21e-4 SMART
Pfam:E1-E2_ATPase 156 444 1.7e-56 PFAM
Pfam:Hydrolase 448 787 3.9e-25 PFAM
Pfam:HAD 451 784 2.4e-16 PFAM
Pfam:Hydrolase_like2 497 593 9.4e-17 PFAM
Pfam:Hydrolase_3 745 820 1.7e-6 PFAM
transmembrane domain 833 855 N/A INTRINSIC
Pfam:Cation_ATPase_C 857 1039 7.3e-46 PFAM
low complexity region 1057 1070 N/A INTRINSIC
Pfam:ATP_Ca_trans_C 1081 1144 1.4e-31 PFAM
low complexity region 1151 1166 N/A INTRINSIC
low complexity region 1175 1189 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000152831
SMART Domains Protein: ENSMUSP00000138165
Gene: ENSMUSG00000030302

DomainStartEndE-ValueType
Cation_ATPase_N 47 123 1.21e-4 SMART
Pfam:E1-E2_ATPase 156 444 6.1e-57 PFAM
Pfam:Hydrolase 448 787 1.4e-25 PFAM
Pfam:HAD 451 784 7.7e-17 PFAM
Pfam:Hydrolase_like2 497 593 4.4e-17 PFAM
Pfam:Hydrolase_3 745 820 4.2e-7 PFAM
transmembrane domain 833 855 N/A INTRINSIC
Pfam:Cation_ATPase_C 857 1039 2.7e-46 PFAM
low complexity region 1057 1070 N/A INTRINSIC
Pfam:ATP_Ca_trans_C 1081 1149 1.3e-19 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000205052
SMART Domains Protein: ENSMUSP00000145174
Gene: ENSMUSG00000030302

DomainStartEndE-ValueType
Cation_ATPase_N 47 123 1.21e-4 SMART
Pfam:E1-E2_ATPase 155 310 1.9e-28 PFAM
Pfam:E1-E2_ATPase 328 443 1.1e-13 PFAM
Pfam:HAD 451 780 2.7e-19 PFAM
Pfam:Cation_ATPase 497 593 5.8e-17 PFAM
Pfam:Hydrolase 576 783 2e-8 PFAM
Pfam:Hydrolase_3 711 816 2.3e-7 PFAM
transmembrane domain 829 851 N/A INTRINSIC
Pfam:Cation_ATPase_C 853 1035 2.5e-47 PFAM
low complexity region 1053 1066 N/A INTRINSIC
Pfam:ATP_Ca_trans_C 1077 1129 2.6e-30 PFAM
low complexity region 1147 1162 N/A INTRINSIC
low complexity region 1171 1185 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 99.2%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the family of P-type primary ion transport ATPases characterized by the formation of an aspartyl phosphate intermediate during the reaction cycle. These enzymes remove bivalent calcium ions from eukaryotic cells against very large concentration gradients and play a critical role in intracellular calcium homeostasis. The mammalian plasma membrane calcium ATPase isoforms are encoded by at least four separate genes and the diversity of these enzymes is further increased by alternative splicing of transcripts. The expression of different isoforms and splice variants is regulated in a developmental, tissue- and cell type-specific manner, suggesting that these pumps are functionally adapted to the physiological needs of particular cells and tissues. This gene encodes the plasma membrane calcium ATPase isoform 2. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous mutants exhibit slower growth, balance problems, and deafness, associated with cerebellar abnormalities, an absence of otoconia, and abnormalities of the organ of Corti. Heterozygotes exhibit appreciable age-dependent hearing loss. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 68 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adgra2 G A 8: 27,609,172 (GRCm39) V798M probably damaging Het
Adprhl1 A G 8: 13,273,245 (GRCm39) L1171P probably benign Het
Birc6 A T 17: 74,938,696 (GRCm39) N2701Y probably damaging Het
Bptf A T 11: 106,943,720 (GRCm39) N2720K probably damaging Het
Ccpg1 T C 9: 72,919,312 (GRCm39) L309S probably damaging Het
Cep295 T C 9: 15,234,903 (GRCm39) N2126S probably benign Het
Cln5 A G 14: 103,313,734 (GRCm39) T329A probably benign Het
Cmas T A 6: 142,716,935 (GRCm39) L276M probably benign Het
Cnbd1 A C 4: 19,098,142 (GRCm39) probably null Het
Depdc1b A G 13: 108,460,444 (GRCm39) N18S probably damaging Het
Dido1 C A 2: 180,302,468 (GRCm39) R1812I probably damaging Het
Dnajc2 G A 5: 21,968,478 (GRCm39) T403M probably damaging Het
Dnm1 T A 2: 32,230,455 (GRCm39) I120F probably damaging Het
Egfl6 C T X: 165,319,235 (GRCm39) V379I probably benign Het
Foxa2 T A 2: 147,887,799 (GRCm39) K12M probably damaging Het
Fut7 T A 2: 25,315,336 (GRCm39) V198E probably damaging Het
Gramd1b A T 9: 40,244,793 (GRCm39) V205E probably damaging Het
Gtf2i T A 5: 134,284,770 (GRCm39) N510Y probably damaging Het
H2-M1 T C 17: 36,982,248 (GRCm39) I118V probably benign Het
Icam1 T C 9: 20,937,697 (GRCm39) F245L probably damaging Het
Ifna16 C T 4: 88,595,060 (GRCm39) A12T probably benign Het
Il12rb2 T C 6: 67,333,587 (GRCm39) T231A probably benign Het
Klrb1a T C 6: 128,586,816 (GRCm39) probably null Het
Mc3r T C 2: 172,091,639 (GRCm39) L287P probably damaging Het
Mme A T 3: 63,208,426 (GRCm39) I63L probably benign Het
Msh3 A G 13: 92,478,757 (GRCm39) V404A probably benign Het
Myrf T A 19: 10,188,010 (GRCm39) I896F possibly damaging Het
Nup205 T A 6: 35,202,746 (GRCm39) Y1318N probably benign Het
Or2t47 A T 11: 58,442,313 (GRCm39) Y251N probably damaging Het
Or7g17 T A 9: 18,768,748 (GRCm39) S267T possibly damaging Het
Osbp T A 19: 11,943,590 (GRCm39) W96R probably damaging Het
Pcf11 A G 7: 92,307,318 (GRCm39) L950P probably damaging Het
Pcnt T C 10: 76,190,089 (GRCm39) T2816A probably benign Het
Pde7a A G 3: 19,310,966 (GRCm39) Y87H probably damaging Het
Pip4k2c T C 10: 127,041,569 (GRCm39) H163R probably damaging Het
Pld1 T A 3: 28,174,900 (GRCm39) L846Q probably damaging Het
Plppr2 T A 9: 21,852,379 (GRCm39) S113T probably benign Het
Pms1 A T 1: 53,314,284 (GRCm39) L87Q probably damaging Het
Rasa1 A G 13: 85,436,690 (GRCm39) S113P possibly damaging Het
Rexo1 T A 10: 80,385,540 (GRCm39) H506L probably damaging Het
Rps12 T C 10: 23,662,777 (GRCm39) I6V probably benign Het
Rsph3a T C 17: 8,171,395 (GRCm39) M170T probably benign Het
Rsrc2 A G 5: 123,877,688 (GRCm39) S156P unknown Het
Rtp3 T C 9: 110,815,586 (GRCm39) T260A probably benign Het
Sall2 A G 14: 52,551,224 (GRCm39) F657S probably damaging Het
Serpind1 T A 16: 17,154,318 (GRCm39) N48K probably benign Het
Slc38a11 T A 2: 65,188,484 (GRCm39) D95V probably benign Het
Slc5a4a T C 10: 76,002,608 (GRCm39) C255R probably damaging Het
Slc6a12 C A 6: 121,335,661 (GRCm39) Y330* probably null Het
Slco1b2 T C 6: 141,602,655 (GRCm39) Y203H possibly damaging Het
Spdye4a C T 5: 143,210,848 (GRCm39) R74K probably benign Het
Stab2 ACC AC 10: 86,692,561 (GRCm39) probably null Het
Stat1 A T 1: 52,165,695 (GRCm39) D97V probably damaging Het
Stk11ip A G 1: 75,505,585 (GRCm39) E418G probably damaging Het
Tcf20 T C 15: 82,739,876 (GRCm39) D525G probably damaging Het
Tcstv7b C T 13: 120,702,495 (GRCm39) P97L possibly damaging Het
Tlr2 A T 3: 83,745,840 (GRCm39) L81Q probably damaging Het
Tmt1a3 C T 15: 100,232,857 (GRCm39) A16V probably benign Het
Trim50 T A 5: 135,395,475 (GRCm39) I277N probably damaging Het
Ttn T A 2: 76,619,806 (GRCm39) Q15954L probably benign Het
Unc13d AATGCCTCCCATGCC AATGCCTCCCATGCCTCCCATGCC 11: 115,958,998 (GRCm39) probably benign Het
Wdr43 A G 17: 71,960,494 (GRCm39) K592R probably benign Het
Xirp2 A G 2: 67,346,599 (GRCm39) I2947V probably benign Het
Zan A C 5: 137,405,992 (GRCm39) F3746V unknown Het
Zfp418 G A 7: 7,185,171 (GRCm39) S378N probably benign Het
Zfp518b C G 5: 38,830,240 (GRCm39) Q588H probably damaging Het
Zfp959 G A 17: 56,204,212 (GRCm39) R83K possibly damaging Het
Znrf3 G A 11: 5,231,915 (GRCm39) R437C probably damaging Het
Other mutations in Atp2b2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00802:Atp2b2 APN 6 113,782,476 (GRCm39) missense possibly damaging 0.69
IGL01140:Atp2b2 APN 6 113,766,932 (GRCm39) missense possibly damaging 0.94
IGL02065:Atp2b2 APN 6 113,790,828 (GRCm39) missense probably damaging 1.00
IGL02267:Atp2b2 APN 6 113,770,691 (GRCm39) missense probably damaging 1.00
IGL02383:Atp2b2 APN 6 113,790,903 (GRCm39) missense probably damaging 0.99
IGL02498:Atp2b2 APN 6 113,770,815 (GRCm39) missense probably damaging 0.99
IGL02631:Atp2b2 APN 6 113,725,506 (GRCm39) missense probably damaging 1.00
IGL03028:Atp2b2 APN 6 113,736,103 (GRCm39) missense probably damaging 0.99
IGL03221:Atp2b2 APN 6 113,737,820 (GRCm39) splice site probably benign
IGL03290:Atp2b2 APN 6 113,770,715 (GRCm39) missense probably damaging 1.00
johan UTSW 6 113,750,349 (GRCm39) missense probably damaging 1.00
lohan UTSW 6 113,737,611 (GRCm39) missense probably damaging 1.00
IGL02799:Atp2b2 UTSW 6 113,739,813 (GRCm39) nonsense probably null
R0116:Atp2b2 UTSW 6 113,770,656 (GRCm39) missense probably damaging 1.00
R0131:Atp2b2 UTSW 6 113,770,743 (GRCm39) missense probably damaging 1.00
R0131:Atp2b2 UTSW 6 113,770,743 (GRCm39) missense probably damaging 1.00
R0132:Atp2b2 UTSW 6 113,770,743 (GRCm39) missense probably damaging 1.00
R0195:Atp2b2 UTSW 6 113,770,835 (GRCm39) missense probably benign 0.07
R0421:Atp2b2 UTSW 6 113,790,849 (GRCm39) missense probably damaging 1.00
R0791:Atp2b2 UTSW 6 113,750,349 (GRCm39) missense probably damaging 1.00
R0792:Atp2b2 UTSW 6 113,750,349 (GRCm39) missense probably damaging 1.00
R1033:Atp2b2 UTSW 6 113,770,849 (GRCm39) splice site probably null
R1248:Atp2b2 UTSW 6 113,794,153 (GRCm39) missense probably damaging 1.00
R1524:Atp2b2 UTSW 6 113,751,162 (GRCm39) splice site probably benign
R1809:Atp2b2 UTSW 6 113,780,704 (GRCm39) intron probably benign
R1829:Atp2b2 UTSW 6 113,750,329 (GRCm39) missense probably damaging 1.00
R1854:Atp2b2 UTSW 6 113,819,244 (GRCm39) missense probably damaging 1.00
R2127:Atp2b2 UTSW 6 113,737,611 (GRCm39) missense probably damaging 1.00
R2138:Atp2b2 UTSW 6 113,773,268 (GRCm39) missense probably benign 0.21
R2351:Atp2b2 UTSW 6 113,766,718 (GRCm39) missense possibly damaging 0.91
R3923:Atp2b2 UTSW 6 113,774,069 (GRCm39) critical splice donor site probably null
R3951:Atp2b2 UTSW 6 113,737,792 (GRCm39) missense possibly damaging 0.51
R4178:Atp2b2 UTSW 6 113,770,679 (GRCm39) missense probably damaging 1.00
R4353:Atp2b2 UTSW 6 113,742,745 (GRCm39) missense probably benign 0.01
R4578:Atp2b2 UTSW 6 113,737,672 (GRCm39) missense probably damaging 1.00
R4797:Atp2b2 UTSW 6 113,766,847 (GRCm39) missense possibly damaging 0.92
R4884:Atp2b2 UTSW 6 113,819,147 (GRCm39) missense possibly damaging 0.65
R4976:Atp2b2 UTSW 6 113,736,122 (GRCm39) missense probably damaging 1.00
R5273:Atp2b2 UTSW 6 113,736,193 (GRCm39) missense probably damaging 1.00
R5350:Atp2b2 UTSW 6 113,736,199 (GRCm39) missense probably damaging 0.99
R5414:Atp2b2 UTSW 6 113,819,102 (GRCm39) missense probably damaging 1.00
R5560:Atp2b2 UTSW 6 113,751,319 (GRCm39) missense possibly damaging 0.90
R5589:Atp2b2 UTSW 6 113,751,400 (GRCm39) missense possibly damaging 0.94
R5790:Atp2b2 UTSW 6 113,736,270 (GRCm39) missense probably damaging 0.97
R6001:Atp2b2 UTSW 6 113,770,728 (GRCm39) missense probably damaging 1.00
R6127:Atp2b2 UTSW 6 113,790,838 (GRCm39) missense probably damaging 1.00
R6331:Atp2b2 UTSW 6 113,774,092 (GRCm39) missense probably benign 0.01
R6925:Atp2b2 UTSW 6 113,737,681 (GRCm39) missense probably damaging 1.00
R7231:Atp2b2 UTSW 6 113,742,693 (GRCm39) missense possibly damaging 0.89
R8219:Atp2b2 UTSW 6 113,770,811 (GRCm39) missense probably damaging 1.00
R8233:Atp2b2 UTSW 6 113,742,680 (GRCm39) critical splice donor site probably null
R8286:Atp2b2 UTSW 6 113,819,275 (GRCm39) missense possibly damaging 0.64
R8369:Atp2b2 UTSW 6 113,790,747 (GRCm39) critical splice donor site probably null
R8444:Atp2b2 UTSW 6 113,770,772 (GRCm39) missense probably benign 0.18
R8942:Atp2b2 UTSW 6 113,790,991 (GRCm39) missense probably benign 0.00
R8953:Atp2b2 UTSW 6 113,737,630 (GRCm39) missense possibly damaging 0.82
R8977:Atp2b2 UTSW 6 113,750,325 (GRCm39) missense probably damaging 1.00
R9051:Atp2b2 UTSW 6 113,740,566 (GRCm39) missense probably damaging 1.00
R9399:Atp2b2 UTSW 6 113,780,713 (GRCm39) missense probably benign
X0020:Atp2b2 UTSW 6 113,782,461 (GRCm39) missense probably damaging 1.00
X0020:Atp2b2 UTSW 6 113,782,460 (GRCm39) missense probably damaging 1.00
Z1088:Atp2b2 UTSW 6 113,819,267 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GTCTGATGGGCTGGAATACAAG -3'
(R):5'- AGAATGGTCTCATGTGCAGG -3'

Sequencing Primer
(F):5'- TCTGATGGGCTGGAATACAAGATATC -3'
(R):5'- TCTCATGTGCAGGAGTGTATG -3'
Posted On 2022-10-06