Mutagenetix > Incidental Mutation

Incidental Mutation 'R9659:Zfand4'

727445

Institutional Source

Beutler Lab

Gene Symbol

Zfand4

Ensembl Gene

ENSMUSG00000042213

Gene Name

zinc finger, AN1-type domain 4

Synonyms

Anubl1, 2810002D23Rik

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.108) question?

Stock #

R9659 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

116241183-116307263 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 116282588 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Aspartic acid at position 54 (Y54D)

Ref Sequence

ENSEMBL: ENSMUSP00000152313 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000036503] [ENSMUST00000112900] [ENSMUST00000220845] [ENSMUST00000221069] [ENSMUST00000222494] [ENSMUST00000222819] [ENSMUST00000223495]

AlphaFold

D3Z3C6

Predicted Effect

SMART Domains

Protein: ENSMUSP00000040057
Gene: ENSMUSG00000042213
AA Change: Y202D

Domain	Start	End	E-Value	Type
low complexity region	118	151	N/A	INTRINSIC
low complexity region	458	472	N/A	INTRINSIC
ZnF_AN1	554	592	4.18e-16	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000112900
AA Change: Y221D

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000108521
Gene: ENSMUSG00000042213
AA Change: Y221D

Domain	Start	End	E-Value	Type
UBQ	54	125	4.11e-15	SMART
low complexity region	262	295	N/A	INTRINSIC
low complexity region	602	616	N/A	INTRINSIC
ZnF_AN1	698	736	4.18e-16	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000220845

Predicted Effect

probably damaging
Transcript: ENSMUST00000221069
AA Change: Y54D

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

unknown
Transcript: ENSMUST00000222494
AA Change: C91W

Predicted Effect

probably benign
Transcript: ENSMUST00000222819

Predicted Effect

probably benign
Transcript: ENSMUST00000223495

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.2%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A330070K13Rik	T	C	5: 130,407,876 (GRCm39)	I112V	unknown	Het
Adcy7	A	G	8: 89,045,733 (GRCm39)	T572A	probably benign	Het
Atad5	G	T	11: 79,980,542 (GRCm39)		probably benign	Het
C2cd2	A	G	16: 97,723,473 (GRCm39)	S15P	possibly damaging	Het
Cabp1	T	C	5: 115,311,187 (GRCm39)	D289G	possibly damaging	Het
Ccdc14	A	G	16: 34,541,913 (GRCm39)	I545V	probably damaging	Het
Cep295	C	A	9: 15,233,846 (GRCm39)	A2317S	probably benign	Het
Cerkl	T	C	2: 79,223,322 (GRCm39)	D133G	possibly damaging	Het
Cited4	T	G	4: 120,524,543 (GRCm39)	C182G	probably damaging	Het
Col6a5	T	A	9: 105,811,034 (GRCm39)	K828N	unknown	Het
Ear2	A	G	14: 44,340,705 (GRCm39)	Y121C	probably damaging	Het
Ect2l	C	T	10: 18,041,347 (GRCm39)	C369Y	possibly damaging	Het
Elapor1	G	A	3: 108,377,297 (GRCm39)	T387I	possibly damaging	Het
Ep300	A	G	15: 81,505,273 (GRCm39)	Y631C	unknown	Het
Ephb4	T	G	5: 137,363,743 (GRCm39)	Y583D	probably damaging	Het
Fbn2	C	G	18: 58,342,654 (GRCm39)	R75P	probably damaging	Het
Gabra2	T	C	5: 71,192,140 (GRCm39)	D63G	probably benign	Het
Gfra1	A	G	19: 58,441,652 (GRCm39)	M93T	probably damaging	Het
Gm21886	AGAGGCCTGCAGACAGTAGGTGCTCACTAGGGCCTGCAGACAGCAGGTGCTCACTGAGGCCTG	AGAGGCCTG	18: 80,132,776 (GRCm39)		probably benign	Het
Gm3604	A	T	13: 62,519,724 (GRCm39)	H10Q	possibly damaging	Het
Helz2	T	C	2: 180,882,025 (GRCm39)	D256G	probably benign	Het
Herc1	A	C	9: 66,307,185 (GRCm39)	I1002L	probably benign	Het
Hpgd	C	G	8: 56,772,075 (GRCm39)	C182W	probably damaging	Het
Htr5b	A	G	1: 121,455,428 (GRCm39)	L164P	possibly damaging	Het
Kmo	T	C	1: 175,486,085 (GRCm39)	F403L	probably damaging	Het
Ly75	C	A	2: 60,168,665 (GRCm39)	D748Y	probably damaging	Het
Mcm5	C	T	8: 75,844,168 (GRCm39)	S313F	probably benign	Het
Mipep	A	G	14: 61,083,893 (GRCm39)	T595A	probably damaging	Het
Muc6	T	C	7: 141,232,100 (GRCm39)	D968G	probably damaging	Het
Myo18b	T	C	5: 113,022,382 (GRCm39)	T337A	unknown	Het
Nlrp1b	T	A	11: 71,073,132 (GRCm39)	Q237L	possibly damaging	Het
Nr1h4	A	G	10: 89,314,638 (GRCm39)		probably null	Het
Nxph1	A	G	6: 9,247,418 (GRCm39)	T130A	probably damaging	Het
Or10al6	T	G	17: 38,082,880 (GRCm39)	F112C	probably damaging	Het
Or1l4	T	A	2: 37,091,897 (GRCm39)	C215S	possibly damaging	Het
Or4m1	A	G	14: 50,558,181 (GRCm39)	F37S	probably benign	Het
Or5p4	T	C	7: 107,680,745 (GRCm39)	V248A	probably damaging	Het
Or8g21	A	G	9: 38,906,296 (GRCm39)	V145A	possibly damaging	Het
Pcsk5	A	G	19: 17,455,245 (GRCm39)	Y1062H	probably benign	Het
Plch1	T	C	3: 63,681,136 (GRCm39)	I164V	probably benign	Het
Plekhh2	T	A	17: 84,854,892 (GRCm39)	M42K	possibly damaging	Het
Polr2a	T	C	11: 69,625,654 (GRCm39)	Y1832C	unknown	Het
Prpf4	G	A	4: 62,334,296 (GRCm39)		probably null	Het
Psg16	T	C	7: 16,824,524 (GRCm39)	S12P	possibly damaging	Het
Ptpn14	T	A	1: 189,587,174 (GRCm39)	M528K	probably benign	Het
Rb1cc1	T	A	1: 6,318,673 (GRCm39)	H697Q	probably benign	Het
Reg3a	T	G	6: 78,360,574 (GRCm39)	C171G	possibly damaging	Het
Slc22a26	G	A	19: 7,763,798 (GRCm39)	P412S	probably benign	Het
Spata31e5	G	T	1: 28,816,536 (GRCm39)	H499N	probably benign	Het
Tcstv2a	T	A	13: 120,725,754 (GRCm39)	D139E	probably damaging	Het
Tlk2	T	C	11: 105,131,263 (GRCm39)	I203T	probably benign	Het
Tmem120b	T	G	5: 123,253,788 (GRCm39)	H279Q	probably damaging	Het
Trip4	T	C	9: 65,740,702 (GRCm39)	E535G	probably benign	Het
Ttn	C	T	2: 76,715,357 (GRCm39)	E7912K	unknown	Het
Ubr5	A	T	15: 37,984,254 (GRCm39)	L2298I		Het
Utp20	A	G	10: 88,653,171 (GRCm39)	L303P	probably damaging	Het
Vcan	A	G	13: 89,839,860 (GRCm39)	Y1895H	probably damaging	Het
Vmn2r2	T	C	3: 64,041,942 (GRCm39)	N258D	possibly damaging	Het
Wdr20rt	A	T	12: 65,273,343 (GRCm39)	S269C	probably damaging	Het
Zfp82	C	T	7: 29,755,963 (GRCm39)	R373H	probably damaging	Het
Zmiz2	A	G	11: 6,346,814 (GRCm39)	E141G	probably benign	Het

Other mutations in Zfand4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01415:Zfand4	APN	6	116,291,830 (GRCm39)	missense	probably benign	0.14
IGL02001:Zfand4	APN	6	116,250,613 (GRCm39)	missense	probably benign	0.11
IGL02047:Zfand4	APN	6	116,291,889 (GRCm39)	missense	probably damaging	1.00
IGL02887:Zfand4	APN	6	116,250,617 (GRCm39)	missense	possibly damaging	0.66
IGL02943:Zfand4	APN	6	116,250,837 (GRCm39)	splice site	probably benign
IGL03058:Zfand4	APN	6	116,265,038 (GRCm39)	missense	probably benign	0.03
IGL03130:Zfand4	APN	6	116,250,620 (GRCm39)	missense	probably damaging	0.99
IGL03253:Zfand4	APN	6	116,261,770 (GRCm39)	missense	probably damaging	1.00
PIT4802001:Zfand4	UTSW	6	116,261,736 (GRCm39)	missense	probably damaging	1.00
R0015:Zfand4	UTSW	6	116,305,258 (GRCm39)	missense	probably damaging	1.00
R0133:Zfand4	UTSW	6	116,291,700 (GRCm39)	missense	probably benign	0.02
R0446:Zfand4	UTSW	6	116,265,015 (GRCm39)	missense	probably benign	0.29
R0508:Zfand4	UTSW	6	116,262,828 (GRCm39)	missense	probably damaging	1.00
R1385:Zfand4	UTSW	6	116,250,599 (GRCm39)	missense	probably damaging	1.00
R1577:Zfand4	UTSW	6	116,306,373 (GRCm39)	nonsense	probably null
R2179:Zfand4	UTSW	6	116,291,742 (GRCm39)	missense	possibly damaging	0.92
R3862:Zfand4	UTSW	6	116,270,776 (GRCm39)	intron	probably benign
R4607:Zfand4	UTSW	6	116,305,195 (GRCm39)	nonsense	probably null
R4608:Zfand4	UTSW	6	116,305,195 (GRCm39)	nonsense	probably null
R4720:Zfand4	UTSW	6	116,265,122 (GRCm39)	critical splice donor site	probably null
R4724:Zfand4	UTSW	6	116,250,780 (GRCm39)	missense	probably damaging	1.00
R4771:Zfand4	UTSW	6	116,291,311 (GRCm39)	missense	probably damaging	1.00
R5541:Zfand4	UTSW	6	116,291,256 (GRCm39)	missense	possibly damaging	0.50
R5721:Zfand4	UTSW	6	116,264,956 (GRCm39)	missense	probably damaging	1.00
R5901:Zfand4	UTSW	6	116,265,084 (GRCm39)	missense	probably damaging	0.99
R6253:Zfand4	UTSW	6	116,250,575 (GRCm39)	missense	probably damaging	0.97
R6798:Zfand4	UTSW	6	116,305,214 (GRCm39)	missense	probably benign	0.01
R7030:Zfand4	UTSW	6	116,282,618 (GRCm39)	missense	probably benign	0.01
R7081:Zfand4	UTSW	6	116,292,581 (GRCm39)	missense	possibly damaging	0.71
R7082:Zfand4	UTSW	6	116,305,337 (GRCm39)	splice site	probably null
R8147:Zfand4	UTSW	6	116,291,169 (GRCm39)	missense	probably damaging	0.99
R8703:Zfand4	UTSW	6	116,250,604 (GRCm39)	missense	probably damaging	0.99
R8973:Zfand4	UTSW	6	116,291,041 (GRCm39)	missense	probably benign	0.07
Z1176:Zfand4	UTSW	6	116,290,882 (GRCm39)	missense	probably damaging	0.98
Z1177:Zfand4	UTSW	6	116,290,882 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- AGCTGTCCACCCTCAATTTTAAG -3'
(R):5'- CCTGCCAGTGTAAGGGAGAG -3'

Sequencing Primer
(F):5'- CTCAGCTAGGTACCACATTTGAGG -3'
(R):5'- GAGAAAACCTTGGCCAAAAGC -3'

Posted On

2022-10-06