Mutagenetix > Incidental Mutation

Incidental Mutation 'R9668:Dpf1'

727922

Institutional Source

Beutler Lab

Gene Symbol

Dpf1

Ensembl Gene

ENSMUSG00000030584

Gene Name

double PHD fingers 1

Synonyms

neuro-d4, Neud4

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9668 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

29003366-29017017 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

C to T at 29009084 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Stop codon at position 70 (Q70*)

Ref Sequence

ENSEMBL: ENSMUSP00000054385 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000049977] [ENSMUST00000065181] [ENSMUST00000108230] [ENSMUST00000108231]

AlphaFold

Q9QX66

Predicted Effect

probably null
Transcript: ENSMUST00000049977
AA Change: Q70*

SMART Domains

Protein: ENSMUSP00000054385
Gene: ENSMUSG00000030584
AA Change: Q70*

Domain	Start	End	E-Value	Type
Pfam:Requiem_N	12	85	1.6e-39	PFAM
ZnF_C2H2	196	219	2.4e-3	SMART
PHD	274	327	8.98e-7	SMART
RING	275	326	1.06e1	SMART
PHD	328	374	2.6e-12	SMART
RING	329	373	8.53e-1	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000065181
AA Change: Q69*

SMART Domains

Protein: ENSMUSP00000070539
Gene: ENSMUSG00000030584
AA Change: Q69*

Domain	Start	End	E-Value	Type
Pfam:Requiem_N	11	84	2e-39	PFAM
ZnF_C2H2	195	218	2.4e-3	SMART
PHD	273	326	8.98e-7	SMART
RING	274	325	1.06e1	SMART
PHD	327	373	2.6e-12	SMART
RING	328	372	8.53e-1	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000108230
AA Change: Q69*

SMART Domains

Protein: ENSMUSP00000103865
Gene: ENSMUSG00000030584
AA Change: Q69*

Domain	Start	End	E-Value	Type
Pfam:Requiem_N	11	84	9.7e-40	PFAM
PHD	229	282	8.98e-7	SMART
RING	230	281	1.06e1	SMART
PHD	283	339	6.85e-12	SMART
RING	284	338	9.5e-1	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000108231
AA Change: Q70*

SMART Domains

Protein: ENSMUSP00000103866
Gene: ENSMUSG00000030584
AA Change: Q70*

Domain	Start	End	E-Value	Type
Pfam:Requiem_N	13	84	1.2e-39	PFAM
ZnF_C2H2	196	219	2.4e-3	SMART
PHD	274	327	8.98e-7	SMART
RING	275	326	1.06e1	SMART
PHD	328	384	6.85e-12	SMART
RING	329	383	9.5e-1	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000137848
AA Change: Q25*

SMART Domains

Protein: ENSMUSP00000120956
Gene: ENSMUSG00000030584
AA Change: Q25*

Domain	Start	End	E-Value	Type
Pfam:Requiem_N	1	40	8.9e-20	PFAM
ZnF_C2H2	122	143	5.34e-1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000142958

SMART Domains

Protein: ENSMUSP00000117186
Gene: ENSMUSG00000030584

Domain	Start	End	E-Value	Type
ZnF_C2H2	21	44	2.4e-3	SMART
PHD	82	135	8.98e-7	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acox1	G	T	11: 116,089,137 (GRCm39)	Y60*	probably null	Het
Acp7	T	A	7: 28,314,562 (GRCm39)		probably null	Het
Adamts17	G	A	7: 66,797,438 (GRCm39)	V1052I	possibly damaging	Het
Ankrd13b	T	A	11: 77,368,594 (GRCm39)	E42V	possibly damaging	Het
Ano1	C	A	7: 144,164,579 (GRCm39)		probably null	Het
Atp5pb	C	T	3: 105,863,356 (GRCm39)	V27I	probably benign	Het
C2cd2	A	G	16: 97,671,418 (GRCm39)	S494P	probably damaging	Het
Cd320	G	A	17: 34,065,113 (GRCm39)	C82Y	probably damaging	Het
Cdc16	T	A	8: 13,817,552 (GRCm39)	S288T	possibly damaging	Het
Chrne	A	G	11: 70,507,779 (GRCm39)		probably null	Het
Col12a1	G	A	9: 79,546,960 (GRCm39)	Q2291*	probably null	Het
Cps1	A	G	1: 67,213,649 (GRCm39)	S794G	probably benign	Het
Csmd1	A	T	8: 16,261,772 (GRCm39)	D908E	probably benign	Het
Fam227a	A	T	15: 79,526,444 (GRCm39)	N129K	probably benign	Het
Fcho2	T	A	13: 98,913,965 (GRCm39)	I211F	probably benign	Het
Fezf1	T	C	6: 23,247,574 (GRCm39)	D167G	probably benign	Het
Flt3	G	A	5: 147,293,694 (GRCm39)	P461S	probably benign	Het
Fry	G	T	5: 150,282,318 (GRCm39)	A314S	probably damaging	Het
Gm6309	A	G	5: 146,105,026 (GRCm39)	S296P	probably benign	Het
Gmppb	T	G	9: 107,928,362 (GRCm39)	V291G	probably damaging	Het
Hmcn1	G	T	1: 150,619,492 (GRCm39)	S1207R	probably benign	Het
Iars1	C	T	13: 49,840,885 (GRCm39)	P6L	probably damaging	Het
Kdm5d	T	A	Y: 943,075 (GRCm39)	S1519R	possibly damaging	Het
Kpna2	G	A	11: 106,881,541 (GRCm39)	T363I	probably damaging	Het
Lrp1b	A	T	2: 41,075,982 (GRCm39)	H1886Q		Het
Meak7	T	C	8: 120,488,514 (GRCm39)	E436G	probably damaging	Het
Mettl5	C	T	2: 69,711,723 (GRCm39)	D48N	probably benign	Het
Mfsd4a	C	T	1: 131,969,628 (GRCm39)	G442S	probably damaging	Het
Mief2	A	G	11: 60,622,074 (GRCm39)	T215A	probably damaging	Het
Myt1	C	T	2: 181,452,135 (GRCm39)	T824I	probably damaging	Het
Naprt	C	A	15: 75,765,281 (GRCm39)	V148L	possibly damaging	Het
Nckap1l	C	T	15: 103,382,277 (GRCm39)	R491C	probably damaging	Het
Nr1i2	A	G	16: 38,071,573 (GRCm39)	M321T	possibly damaging	Het
Nup107	A	T	10: 117,610,383 (GRCm39)	I355N	possibly damaging	Het
Or10j2	G	A	1: 173,098,183 (GRCm39)	G147D	possibly damaging	Het
Or10x4	A	T	1: 174,218,898 (GRCm39)	N88Y	probably benign	Het
Or1e28-ps1	A	G	11: 73,615,658 (GRCm39)	I64T	probably benign	Het
Or1l4b	T	G	2: 37,036,518 (GRCm39)	M98R	probably damaging	Het
Or4a80	T	G	2: 89,582,636 (GRCm39)	I179L	probably benign	Het
Or4k35	T	G	2: 111,100,287 (GRCm39)	I142L	probably benign	Het
Pccb	T	C	9: 100,876,634 (GRCm39)	D320G	possibly damaging	Het
Pcdhgb6	A	T	18: 37,875,561 (GRCm39)	I90L	probably benign	Het
Pik3r2	A	G	8: 71,221,459 (GRCm39)	S682P	probably damaging	Het
Pkd1l3	GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA	GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA	8: 110,350,827 (GRCm39)		probably benign	Het
Plagl1	A	G	10: 13,004,466 (GRCm39)	Q578R	unknown	Het
Ppp1r42	A	G	1: 10,073,563 (GRCm39)	I9T	probably benign	Het
Ptcd3	A	T	6: 71,871,275 (GRCm39)	I315K	possibly damaging	Het
Rnf217	A	G	10: 31,484,402 (GRCm39)	L260P	probably damaging	Het
Selp	A	T	1: 163,968,975 (GRCm39)	H525L	possibly damaging	Het
Sh3rf2	T	A	18: 42,244,347 (GRCm39)	M303K	probably benign	Het
Shprh	A	T	10: 11,082,076 (GRCm39)	I1549F	probably damaging	Het
Slc38a7	G	T	8: 96,570,772 (GRCm39)	A244D	probably benign	Het
Stxbp6	G	T	12: 44,949,740 (GRCm39)	T63K	probably damaging	Het
Syne3	A	G	12: 104,898,468 (GRCm39)	S962P	probably damaging	Het
Syt10	T	C	15: 89,711,135 (GRCm39)	I133V	probably damaging	Het
Tars1	T	A	15: 11,394,446 (GRCm39)	K64*	probably null	Het
Tcaf3	A	T	6: 42,566,636 (GRCm39)	W818R	probably damaging	Het
Tekt2	C	T	4: 126,217,444 (GRCm39)	R207H	probably damaging	Het
Tmem70	A	C	1: 16,735,659 (GRCm39)	E43A	probably benign	Het
Trim72	C	A	7: 127,609,092 (GRCm39)	A298E	probably damaging	Het
Washc5	C	T	15: 59,218,062 (GRCm39)		probably null	Het
Zfp707	C	A	15: 75,847,085 (GRCm39)	F378L	possibly damaging	Het
Zfp839	G	A	12: 110,822,280 (GRCm39)	A365T	probably damaging	Het

Other mutations in Dpf1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00478:Dpf1	APN	7	29,015,981 (GRCm39)	unclassified	probably benign
IGL00736:Dpf1	APN	7	29,012,333 (GRCm39)	nonsense	probably null
IGL01804:Dpf1	APN	7	29,015,926 (GRCm39)	missense	probably damaging	1.00
IGL01942:Dpf1	APN	7	29,015,927 (GRCm39)	missense	probably damaging	1.00
IGL01953:Dpf1	APN	7	29,013,732 (GRCm39)	missense	probably damaging	1.00
IGL03191:Dpf1	APN	7	29,015,986 (GRCm39)	unclassified	probably benign
R3622:Dpf1	UTSW	7	29,015,631 (GRCm39)	splice site	probably null
R3924:Dpf1	UTSW	7	29,011,098 (GRCm39)	missense	possibly damaging	0.76
R4234:Dpf1	UTSW	7	29,015,057 (GRCm39)	missense	probably damaging	1.00
R4606:Dpf1	UTSW	7	29,016,015 (GRCm39)	unclassified	probably benign
R5379:Dpf1	UTSW	7	29,003,533 (GRCm39)	missense	probably benign	0.02
R5434:Dpf1	UTSW	7	29,010,756 (GRCm39)	missense	possibly damaging	0.92
R6185:Dpf1	UTSW	7	29,010,696 (GRCm39)	missense	possibly damaging	0.92
R6672:Dpf1	UTSW	7	29,015,693 (GRCm39)	missense	probably damaging	1.00
R6816:Dpf1	UTSW	7	29,011,087 (GRCm39)	missense	possibly damaging	0.61
R7240:Dpf1	UTSW	7	29,011,052 (GRCm39)	missense	probably benign	0.01
R7699:Dpf1	UTSW	7	29,011,032 (GRCm39)	missense	possibly damaging	0.69
R7796:Dpf1	UTSW	7	29,011,106 (GRCm39)	missense	possibly damaging	0.69
R8071:Dpf1	UTSW	7	29,013,566 (GRCm39)	missense	probably benign	0.08
R8929:Dpf1	UTSW	7	29,009,174 (GRCm39)	missense	probably benign	0.39
R9619:Dpf1	UTSW	7	29,012,618 (GRCm39)	missense	probably benign	0.11
R9643:Dpf1	UTSW	7	29,013,742 (GRCm39)	missense	probably damaging	0.96

Predicted Primers

PCR Primer
(F):5'- AGCACTGTCGCAGCTACAAC -3'
(R):5'- GTAACTCAAGACATCCGGGG -3'

Sequencing Primer
(F):5'- TACAACGCGCGCCTGTG -3'
(R):5'- ATAGTCTGCTGGAGGGACACTC -3'

Posted On

2022-10-06