Incidental Mutation 'R9676:Or2t47'
| ID |
728348 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or2t47
|
| Ensembl Gene |
ENSMUSG00000057654 |
| Gene Name |
olfactory receptor family 2 subfamily T member 47 |
| Synonyms |
GA_x6K02T2NKPP-873285-874217, MOR275-2, Olfr328 |
| MMRRC Submission |
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.063)
|
| Stock # |
R9676 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Not validated
|
| Chromosome |
11 |
| Chromosomal Location |
58442131-58443063 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 58442253 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Methionine to Leucine
at position 271
(M271L)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000104452
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000073933]
[ENSMUST00000108824]
[ENSMUST00000215717]
[ENSMUST00000216725]
|
| AlphaFold |
Q5NCD3 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000073933
AA Change: M271L
PolyPhen 2
Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
|
| SMART Domains |
Protein: ENSMUSP00000073588
Gene: ENSMUSG00000057654
AA Change: M271L
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7TM_GPCR_Srsx
|
34 |
303 |
8.3e-6 |
PFAM |
|
Pfam:7tm_1
|
40 |
289 |
1.4e-34 |
PFAM |
|
Pfam:7tm_4
|
138 |
282 |
4.4e-42 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000108824
AA Change: M271L
PolyPhen 2
Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
|
| SMART Domains |
Protein: ENSMUSP00000104452
Gene: ENSMUSG00000057654
AA Change: M271L
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
30 |
306 |
7e-45 |
PFAM |
|
Pfam:7TM_GPCR_Srsx
|
34 |
303 |
8.3e-6 |
PFAM |
|
Pfam:7tm_1
|
40 |
289 |
9.8e-28 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000215717
AA Change: M271L
PolyPhen 2
Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000216725
AA Change: M271L
PolyPhen 2
Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.7%
- 20x: 99.0%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 40 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 2700049A03Rik |
T |
C |
12: 71,207,905 (GRCm39) |
S534P |
possibly damaging |
Het |
| Abcb1a |
A |
T |
5: 8,714,548 (GRCm39) |
K23I |
possibly damaging |
Het |
| Arhgef1 |
G |
A |
7: 24,625,501 (GRCm39) |
G961E |
probably benign |
Het |
| Cand2 |
A |
G |
6: 115,769,122 (GRCm39) |
D644G |
probably benign |
Het |
| Ciart |
A |
G |
3: 95,786,214 (GRCm39) |
V287A |
probably benign |
Het |
| Cldn10 |
G |
T |
14: 119,025,677 (GRCm39) |
V37L |
probably damaging |
Het |
| Clec16a |
C |
A |
16: 10,559,823 (GRCm39) |
T1032K |
probably benign |
Het |
| Crhbp |
A |
T |
13: 95,578,711 (GRCm39) |
Y144N |
probably damaging |
Het |
| Ddn |
A |
T |
15: 98,703,252 (GRCm39) |
I680N |
possibly damaging |
Het |
| Dock4 |
TGTGCCGGTGCCGGTGCCGGTGCCGGTGCC |
TGTGCCGGTGCCGGTGCCGGTGCCGGTGCCGGTGCC |
12: 40,894,379 (GRCm39) |
|
probably benign |
Het |
| Dock4 |
CCGGTG |
CCGGTGACGGTG |
12: 40,894,401 (GRCm39) |
|
probably benign |
Het |
| Dock4 |
GGTGCC |
GGTGCCTGTGCC |
12: 40,894,397 (GRCm39) |
|
probably benign |
Het |
| Dock4 |
TGCCGG |
TGCCGGGGCCGG |
12: 40,894,387 (GRCm39) |
|
probably benign |
Het |
| Dock7 |
T |
C |
4: 98,904,922 (GRCm39) |
Y651C |
probably damaging |
Het |
| Ecel1 |
A |
T |
1: 87,079,743 (GRCm39) |
F457I |
probably damaging |
Het |
| Eif4h |
G |
A |
5: 134,668,242 (GRCm39) |
|
probably benign |
Het |
| Focad |
T |
C |
4: 88,273,682 (GRCm39) |
V1073A |
unknown |
Het |
| Gm9195 |
G |
A |
14: 72,709,667 (GRCm39) |
P482S |
unknown |
Het |
| Ifi206 |
G |
A |
1: 173,308,718 (GRCm39) |
T426I |
|
Het |
| Irag2 |
T |
G |
6: 145,120,338 (GRCm39) |
W518G |
probably damaging |
Het |
| Krt9 |
TCCACTTCCTCCTCCATAGCTGCCCCCACTTCCTCCTCCATAGCTGCCCCCACTTCCTCCTCCATAGCTGCCCCCACTTCCTCCTCCATAGCTGCC |
TCCACTTCCTCCTCCATAGCTGCCCCCACTTCCTCCTCCATAGCTGCCCCCACTTCCTCCTCCATAGCTGCC |
11: 100,079,903 (GRCm39) |
|
probably benign |
Het |
| Lpar3 |
T |
C |
3: 145,990,434 (GRCm39) |
C251R |
probably damaging |
Het |
| Lrrn4cl |
A |
G |
19: 8,829,496 (GRCm39) |
D158G |
probably benign |
Het |
| Myo5b |
T |
A |
18: 74,892,231 (GRCm39) |
N1632K |
probably benign |
Het |
| Neb |
T |
C |
2: 52,060,558 (GRCm39) |
K6275E |
possibly damaging |
Het |
| Niban2 |
G |
A |
2: 32,802,581 (GRCm39) |
V191I |
probably benign |
Het |
| Or1j10 |
A |
G |
2: 36,266,848 (GRCm39) |
E20G |
probably benign |
Het |
| Or4a70 |
A |
T |
2: 89,323,780 (GRCm39) |
M292K |
probably damaging |
Het |
| Phactr3 |
G |
T |
2: 177,925,837 (GRCm39) |
E371* |
probably null |
Het |
| Pigt |
CCAGGCCAGTGAGTAGGTTTGTCTCTGTCTAGTGTGGATCTGTAACCACAGGCCAGTGAGTAGGTTTGTCTCTGTCTAGTGTGGATCTGTAACCACAGGCCAGTGAGTAGGTTTGTCTCTGTCTAGTGTGGAT |
CCAGGCCAGTGAGTAGGTTTGTCTCTGTCTAGTGTGGATCTGTAACCACAGGCCAGTGAGTAGGTTTGTCTCTGTCTAGTGTGGAT |
2: 164,341,589 (GRCm39) |
|
probably null |
Het |
| Plagl1 |
T |
C |
10: 13,003,955 (GRCm39) |
Y408H |
unknown |
Het |
| Pole |
A |
G |
5: 110,443,431 (GRCm39) |
Q385R |
probably benign |
Het |
| Rps15a |
A |
T |
7: 117,714,361 (GRCm39) |
V35D |
probably benign |
Het |
| Sh3rf2 |
C |
T |
18: 42,282,860 (GRCm39) |
P505S |
probably benign |
Het |
| Srrm4 |
T |
C |
5: 116,584,781 (GRCm39) |
|
probably benign |
Het |
| Tenm4 |
G |
T |
7: 96,544,638 (GRCm39) |
R2255L |
probably damaging |
Het |
| Ttc29 |
A |
G |
8: 79,060,384 (GRCm39) |
T435A |
probably benign |
Het |
| Vmn2r79 |
T |
C |
7: 86,686,452 (GRCm39) |
V611A |
probably damaging |
Het |
| Zfp568 |
T |
C |
7: 29,721,823 (GRCm39) |
V256A |
probably benign |
Het |
| Zfyve26 |
T |
C |
12: 79,330,959 (GRCm39) |
K420R |
probably benign |
Het |
|
| Other mutations in Or2t47 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01950:Or2t47
|
APN |
11 |
58,442,560 (GRCm39) |
nonsense |
probably null |
|
|
IGL02887:Or2t47
|
APN |
11 |
58,442,987 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03409:Or2t47
|
APN |
11 |
58,442,388 (GRCm39) |
missense |
probably benign |
0.01 |
|
P4748:Or2t47
|
UTSW |
11 |
58,442,348 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0504:Or2t47
|
UTSW |
11 |
58,442,462 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1637:Or2t47
|
UTSW |
11 |
58,442,246 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R1863:Or2t47
|
UTSW |
11 |
58,442,849 (GRCm39) |
missense |
probably benign |
0.04 |
|
R2158:Or2t47
|
UTSW |
11 |
58,442,768 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2404:Or2t47
|
UTSW |
11 |
58,442,546 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4024:Or2t47
|
UTSW |
11 |
58,442,222 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R4073:Or2t47
|
UTSW |
11 |
58,442,888 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5261:Or2t47
|
UTSW |
11 |
58,442,877 (GRCm39) |
missense |
probably benign |
0.01 |
|
R5399:Or2t47
|
UTSW |
11 |
58,442,969 (GRCm39) |
missense |
probably benign |
0.20 |
|
R6053:Or2t47
|
UTSW |
11 |
58,442,892 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R6411:Or2t47
|
UTSW |
11 |
58,442,483 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R6709:Or2t47
|
UTSW |
11 |
58,442,862 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7243:Or2t47
|
UTSW |
11 |
58,442,227 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7540:Or2t47
|
UTSW |
11 |
58,442,457 (GRCm39) |
missense |
possibly damaging |
0.96 |
|
R8359:Or2t47
|
UTSW |
11 |
58,443,029 (GRCm39) |
missense |
probably benign |
|
|
R8984:Or2t47
|
UTSW |
11 |
58,442,209 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9648:Or2t47
|
UTSW |
11 |
58,442,313 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1186:Or2t47
|
UTSW |
11 |
58,442,387 (GRCm39) |
missense |
probably benign |
|
|
Z1186:Or2t47
|
UTSW |
11 |
58,442,801 (GRCm39) |
missense |
probably benign |
|
|
Z1186:Or2t47
|
UTSW |
11 |
58,442,940 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1187:Or2t47
|
UTSW |
11 |
58,442,940 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1187:Or2t47
|
UTSW |
11 |
58,442,801 (GRCm39) |
missense |
probably benign |
|
|
Z1187:Or2t47
|
UTSW |
11 |
58,442,387 (GRCm39) |
missense |
probably benign |
|
|
Z1188:Or2t47
|
UTSW |
11 |
58,442,940 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1188:Or2t47
|
UTSW |
11 |
58,442,801 (GRCm39) |
missense |
probably benign |
|
|
Z1188:Or2t47
|
UTSW |
11 |
58,442,387 (GRCm39) |
missense |
probably benign |
|
|
Z1189:Or2t47
|
UTSW |
11 |
58,442,940 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1189:Or2t47
|
UTSW |
11 |
58,442,801 (GRCm39) |
missense |
probably benign |
|
|
Z1189:Or2t47
|
UTSW |
11 |
58,442,387 (GRCm39) |
missense |
probably benign |
|
|
Z1190:Or2t47
|
UTSW |
11 |
58,442,940 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1190:Or2t47
|
UTSW |
11 |
58,442,801 (GRCm39) |
missense |
probably benign |
|
|
Z1190:Or2t47
|
UTSW |
11 |
58,442,387 (GRCm39) |
missense |
probably benign |
|
|
Z1191:Or2t47
|
UTSW |
11 |
58,442,940 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1191:Or2t47
|
UTSW |
11 |
58,442,801 (GRCm39) |
missense |
probably benign |
|
|
Z1191:Or2t47
|
UTSW |
11 |
58,442,387 (GRCm39) |
missense |
probably benign |
|
|
Z1192:Or2t47
|
UTSW |
11 |
58,442,940 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1192:Or2t47
|
UTSW |
11 |
58,442,801 (GRCm39) |
missense |
probably benign |
|
|
Z1192:Or2t47
|
UTSW |
11 |
58,442,387 (GRCm39) |
missense |
probably benign |
|
|
| Predicted Primers |
PCR Primer
(F):5'- CCGGATCAACAAACGTGTAGAG -3'
(R):5'- GACCCTCATGTATGTGTGCTG -3'
Sequencing Primer
(F):5'- CGGATCAACAAACGTGTAGAGACAAG -3'
(R):5'- ATTCCTGTGACAGTCATTTCAGG -3'
|
| Posted On |
2022-10-06 |
Incidental Mutation