Mutagenetix > Incidental Mutation

Incidental Mutation 'R9682:Igdcc3'

728632

Institutional Source

Beutler Lab

Gene Symbol

Igdcc3

Ensembl Gene

ENSMUSG00000032394

Gene Name

immunoglobulin superfamily, DCC subclass, member 3

Synonyms

Punc, WI-14920, 2810401C09Rik

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.125) question?

Stock #

R9682 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

65048471-65093154 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 65091332 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 684 (D684G)

Ref Sequence

ENSEMBL: ENSMUSP00000149084 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034961] [ENSMUST00000217371]

AlphaFold

Q8BQC3

Predicted Effect

probably benign
Transcript: ENSMUST00000034961
AA Change: D664G

PolyPhen 2 Score 0.011 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000034961
Gene: ENSMUSG00000032394
AA Change: D664G

Domain	Start	End	E-Value	Type
signal peptide	1	47	N/A	INTRINSIC
IGc2	66	136	1.28e-10	SMART
IGc2	163	228	4.77e-10	SMART
IGc2	262	326	8.06e-8	SMART
IGc2	354	419	3.17e-15	SMART
FN3	436	519	1.2e-13	SMART
FN3	534	615	2.66e-6	SMART
transmembrane domain	631	653	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000217371
AA Change: D684G

PolyPhen 2 Score 0.025 (Sensitivity: 0.95; Specificity: 0.81)

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Homozygotes for a gene trap mutation exhibit reduced performance on the rotarod, suggesting impaired cerebellar function. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb1a	A	T	5: 8,752,507 (GRCm39)	M493L	probably benign	Het
Abcb5	T	A	12: 118,896,328 (GRCm39)	I334F	probably damaging	Het
Acad9	C	T	3: 36,136,268 (GRCm39)	A351V	possibly damaging	Het
Adgrg6	A	T	10: 14,316,128 (GRCm39)	N536K	possibly damaging	Het
Alk	A	T	17: 72,182,058 (GRCm39)	L1322M	possibly damaging	Het
Atp2b1	T	C	10: 98,815,662 (GRCm39)	V102A	possibly damaging	Het
Atp8b3	T	C	10: 80,371,230 (GRCm39)	N48S	probably damaging	Het
B3gnt4	A	T	5: 123,649,516 (GRCm39)	I294L	probably benign	Het
Bnip3	A	G	7: 138,496,445 (GRCm39)	S88P	probably damaging	Het
Ccr2	A	G	9: 123,906,176 (GRCm39)	Y152C	probably damaging	Het
Cd28	T	C	1: 60,804,505 (GRCm39)	L161P	probably damaging	Het
Clcn4	C	T	7: 7,299,797 (GRCm39)	V11M	probably benign	Het
Clec4g	T	A	8: 3,757,713 (GRCm39)	S79C	unknown	Het
Cux1	A	T	5: 136,337,116 (GRCm39)	S799T	probably benign	Het
Cyp2t4	A	T	7: 26,857,611 (GRCm39)	H408L	probably damaging	Het
Cyp3a41a	A	T	5: 145,652,326 (GRCm39)	W58R	possibly damaging	Het
Dicer1	A	G	12: 104,672,484 (GRCm39)	V921A	probably damaging	Het
Dpysl3	A	G	18: 43,491,313 (GRCm39)	L268P	probably damaging	Het
Dus3l	G	A	17: 57,076,770 (GRCm39)	V626I	probably benign	Het
Epb41	C	A	4: 131,655,820 (GRCm39)	D337Y		Het
Fer1l6	A	G	15: 58,422,113 (GRCm39)	T104A	probably benign	Het
Fgd4	T	C	16: 16,302,202 (GRCm39)	T118A	probably benign	Het
Gabra4	T	A	5: 71,798,415 (GRCm39)	Y188F	possibly damaging	Het
Gm28168	A	T	1: 117,875,824 (GRCm39)	H151L	probably damaging	Het
Gm7995	A	G	14: 42,133,395 (GRCm39)	I91V		Het
Heg1	A	G	16: 33,541,298 (GRCm39)	E485G	probably benign	Het
Hirip3	A	G	7: 126,462,021 (GRCm39)	D73G	probably benign	Het
Kif15	A	G	9: 122,815,712 (GRCm39)	E502G	probably damaging	Het
Lrrc31	C	T	3: 30,743,423 (GRCm39)	V181I	probably damaging	Het
Lrrc7	G	T	3: 157,882,954 (GRCm39)	S446R	possibly damaging	Het
Lyst	A	G	13: 13,831,526 (GRCm39)	E1650G	probably benign	Het
Map3k6	A	G	4: 132,975,419 (GRCm39)	Y718C	possibly damaging	Het
Mta1	T	C	12: 113,095,384 (GRCm39)		probably null	Het
Muc16	C	T	9: 18,553,874 (GRCm39)	G4140R	unknown	Het
Nfe2l1	A	C	11: 96,710,944 (GRCm39)	I428M	probably benign	Het
Nup210l	T	A	3: 90,051,469 (GRCm39)	Y538N	possibly damaging	Het
Nxpe4	G	A	9: 48,304,248 (GRCm39)	V112M	probably benign	Het
Or1e16	C	T	11: 73,286,025 (GRCm39)	M274I	probably benign	Het
Or4c112	T	A	2: 88,854,296 (GRCm39)	Q17L	possibly damaging	Het
Or4k40	T	A	2: 111,250,737 (GRCm39)	K186N	probably benign	Het
Or52d3	G	T	7: 104,229,434 (GRCm39)	A194S	probably damaging	Het
Or8g24	G	A	9: 38,989,874 (GRCm39)	H56Y	possibly damaging	Het
Palm	A	G	10: 79,655,039 (GRCm39)	T266A	possibly damaging	Het
Pdzph1	T	G	17: 59,257,262 (GRCm39)	K925N	probably damaging	Het
Pfkfb3	G	T	2: 11,491,058 (GRCm39)	Q179K	probably benign	Het
Phtf1	A	G	3: 103,901,214 (GRCm39)	Q421R	possibly damaging	Het
Pip5k1b	A	T	19: 24,356,318 (GRCm39)	S207T	probably damaging	Het
Pkd2	T	C	5: 104,626,790 (GRCm39)	V324A	probably damaging	Het
Plcxd1	A	T	5: 110,251,477 (GRCm39)	N351I	probably damaging	Het
Prr14l	G	A	5: 32,988,023 (GRCm39)	P491S	probably benign	Het
Rxfp2	A	T	5: 149,966,564 (GRCm39)	R101*	probably null	Het
Saxo2	T	G	7: 82,292,881 (GRCm39)	K72T	probably benign	Het
Sema3b	T	A	9: 107,481,013 (GRCm39)	D108V	probably damaging	Het
Sh3gl2	A	G	4: 85,295,748 (GRCm39)	D150G	probably damaging	Het
Slc6a12	G	A	6: 121,340,704 (GRCm39)	M544I	probably benign	Het
Spag6l	T	C	16: 16,646,981 (GRCm39)		probably null	Het
Stat3	A	G	11: 100,785,593 (GRCm39)	F512L	probably benign	Het
Stk39	A	G	2: 68,196,449 (GRCm39)	S327P	probably damaging	Het
Tjp3	C	T	10: 81,109,645 (GRCm39)	E853K	probably benign	Het
Tmem30c	A	T	16: 57,111,180 (GRCm39)	S31T	probably benign	Het
Tpte	A	T	8: 22,841,493 (GRCm39)	D495V	probably damaging	Het
Ugt2b5	A	T	5: 87,287,522 (GRCm39)	M215K	probably damaging	Het
Vinac1	T	C	2: 128,875,529 (GRCm39)	S1246G	unknown	Het
Vsig2	T	C	9: 37,451,771 (GRCm39)	L135S	probably benign	Het

Other mutations in Igdcc3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00430:Igdcc3	APN	9	65,089,301 (GRCm39)	missense	probably damaging	1.00
IGL01310:Igdcc3	APN	9	65,085,724 (GRCm39)	missense	probably damaging	0.98
IGL01545:Igdcc3	APN	9	65,087,355 (GRCm39)	missense	probably damaging	1.00
IGL01576:Igdcc3	APN	9	65,085,152 (GRCm39)	missense	probably damaging	1.00
IGL01909:Igdcc3	APN	9	65,051,819 (GRCm39)	missense	probably damaging	1.00
IGL02039:Igdcc3	APN	9	65,091,162 (GRCm39)	missense	probably benign	0.18
IGL02055:Igdcc3	APN	9	65,088,562 (GRCm39)	missense	possibly damaging	0.92
IGL02565:Igdcc3	APN	9	65,087,470 (GRCm39)	missense	probably damaging	1.00
R1776:Igdcc3	UTSW	9	65,090,034 (GRCm39)	nonsense	probably null
R4731:Igdcc3	UTSW	9	65,089,279 (GRCm39)	missense	probably damaging	1.00
R5413:Igdcc3	UTSW	9	65,084,797 (GRCm39)	missense	possibly damaging	0.61
R5487:Igdcc3	UTSW	9	65,088,866 (GRCm39)	missense	probably damaging	1.00
R5744:Igdcc3	UTSW	9	65,048,770 (GRCm39)	small deletion	probably benign
R6578:Igdcc3	UTSW	9	65,089,301 (GRCm39)	missense	probably damaging	1.00
R6867:Igdcc3	UTSW	9	65,090,320 (GRCm39)	missense	probably damaging	1.00
R6992:Igdcc3	UTSW	9	65,088,853 (GRCm39)	missense	probably damaging	1.00
R8880:Igdcc3	UTSW	9	65,088,550 (GRCm39)	missense	probably benign	0.20
R9619:Igdcc3	UTSW	9	65,092,552 (GRCm39)	missense	probably benign	0.40
R9718:Igdcc3	UTSW	9	65,090,280 (GRCm39)	critical splice acceptor site	probably null

Predicted Primers

PCR Primer
(F):5'- TCGGAGTCACCTGCATCATC -3'
(R):5'- AGTTGGAGATTGTGCCCTGC -3'

Sequencing Primer
(F):5'- GGAGTCACCTGCATCATCTTCTG -3'
(R):5'- TGCGGCCACTATGTAGGGAG -3'

Posted On

2022-10-06