Incidental Mutation 'R9716:Inpp5d'
ID 730426
Institutional Source Beutler Lab
Gene Symbol Inpp5d
Ensembl Gene ENSMUSG00000026288
Gene Name inositol polyphosphate-5-phosphatase D
Synonyms SHIP1, Src homology 2 domain-containing inositol-5-phosphatase, s-SHIP, SHIP, SHIP-1
MMRRC Submission
Accession Numbers
Essential gene? Probably essential (E-score: 0.906) question?
Stock # R9716 (G1)
Quality Score 225.009
Status Not validated
Chromosome 1
Chromosomal Location 87548034-87648229 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 87625191 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Valine at position 457 (D457V)
Ref Sequence ENSEMBL: ENSMUSP00000127941 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000042275] [ENSMUST00000072999] [ENSMUST00000167032] [ENSMUST00000168783] [ENSMUST00000169754] [ENSMUST00000170300]
AlphaFold Q9ES52
Predicted Effect probably damaging
Transcript: ENSMUST00000042275
AA Change: D456V

PolyPhen 2 Score 0.990 (Sensitivity: 0.72; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000044647
Gene: ENSMUSG00000026288
AA Change: D456V

DomainStartEndE-ValueType
SH2 6 95 7.15e-29 SMART
low complexity region 107 120 N/A INTRINSIC
IPPc 404 720 4.5e-104 SMART
low complexity region 767 777 N/A INTRINSIC
low complexity region 954 979 N/A INTRINSIC
low complexity region 1045 1057 N/A INTRINSIC
low complexity region 1119 1131 N/A INTRINSIC
low complexity region 1139 1148 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000072999
AA Change: D456V

PolyPhen 2 Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)
SMART Domains Protein: ENSMUSP00000072763
Gene: ENSMUSG00000026288
AA Change: D456V

DomainStartEndE-ValueType
SH2 6 95 7.15e-29 SMART
low complexity region 107 120 N/A INTRINSIC
IPPc 404 720 4.5e-104 SMART
low complexity region 767 777 N/A INTRINSIC
low complexity region 932 953 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000167032
AA Change: D194V

PolyPhen 2 Score 0.903 (Sensitivity: 0.82; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000126569
Gene: ENSMUSG00000026288
AA Change: D194V

DomainStartEndE-ValueType
IPPc 142 458 4.5e-104 SMART
low complexity region 505 515 N/A INTRINSIC
low complexity region 692 717 N/A INTRINSIC
low complexity region 783 795 N/A INTRINSIC
low complexity region 857 869 N/A INTRINSIC
low complexity region 877 886 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000168783
AA Change: D457V

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)
SMART Domains Protein: ENSMUSP00000131244
Gene: ENSMUSG00000026288
AA Change: D457V

DomainStartEndE-ValueType
SH2 6 95 7.15e-29 SMART
low complexity region 107 118 N/A INTRINSIC
IPPc 405 721 4.5e-104 SMART
low complexity region 768 778 N/A INTRINSIC
low complexity region 985 997 N/A INTRINSIC
low complexity region 1059 1071 N/A INTRINSIC
low complexity region 1079 1088 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000169754
AA Change: D457V

PolyPhen 2 Score 0.903 (Sensitivity: 0.82; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000127941
Gene: ENSMUSG00000026288
AA Change: D457V

DomainStartEndE-ValueType
SH2 6 95 4.6e-31 SMART
low complexity region 107 118 N/A INTRINSIC
IPPc 405 721 2.2e-106 SMART
low complexity region 768 778 N/A INTRINSIC
low complexity region 955 980 N/A INTRINSIC
low complexity region 1046 1058 N/A INTRINSIC
low complexity region 1120 1132 N/A INTRINSIC
low complexity region 1140 1149 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000170300
AA Change: D194V

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)
SMART Domains Protein: ENSMUSP00000132384
Gene: ENSMUSG00000026288
AA Change: D194V

DomainStartEndE-ValueType
IPPc 142 458 4.5e-104 SMART
low complexity region 505 515 N/A INTRINSIC
low complexity region 722 734 N/A INTRINSIC
low complexity region 796 808 N/A INTRINSIC
low complexity region 816 825 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 99.0%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the inositol polyphosphate-5-phosphatase (INPP5) family and encodes a protein with an N-terminal SH2 domain, an inositol phosphatase domain, and two C-terminal protein interaction domains. Expression of this protein is restricted to hematopoietic cells where its movement from the cytosol to the plasma membrane is mediated by tyrosine phosphorylation. At the plasma membrane, the protein hydrolyzes the 5' phosphate from phosphatidylinositol (3,4,5)-trisphosphate and inositol-1,3,4,5-tetrakisphosphate, thereby affecting multiple signaling pathways. The protein is also partly localized to the nucleus, where it may be involved in nuclear inositol phosphate signaling processes. Overall, the protein functions as a negative regulator of myeloid cell proliferation and survival. Mutations in this gene are associated with defects and cancers of the immune system. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Feb 2014]
PHENOTYPE: Homozygous null mice fail to reject fully mismatched allogeneic marrow grafts, do not develop graft versus host disease, and show enhanced survival after such transplants. Homozygous splice site mutants exhibit wasting, granulocytic lung infiltration anddefective cytolysis by NK cells and CTLs. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 74 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam3 T A 8: 25,204,274 (GRCm39) K178I possibly damaging Het
Adarb1 T A 10: 77,131,539 (GRCm39) H650L possibly damaging Het
Alms1 G T 6: 85,578,234 (GRCm39) L187F possibly damaging Het
Ano3 T A 2: 110,601,376 (GRCm39) N294I probably damaging Het
Asb3 T A 11: 31,031,460 (GRCm39) M360K probably benign Het
Atp6v0d2 T C 4: 19,890,834 (GRCm39) I109V probably benign Het
C9 A T 15: 6,526,430 (GRCm39) probably null Het
Calcr A T 6: 3,687,468 (GRCm39) I510N probably benign Het
Cdc5l G A 17: 45,744,500 (GRCm39) probably benign Het
Cdca3 T A 6: 124,809,172 (GRCm39) I104N probably benign Het
Chpt1 C T 10: 88,339,446 (GRCm39) probably null Het
Chrna5 A G 9: 54,911,919 (GRCm39) I240V probably benign Het
Dhx29 T C 13: 113,081,612 (GRCm39) V412A possibly damaging Het
Dnah11 T A 12: 118,024,148 (GRCm39) M1868L probably damaging Het
Dock6 A G 9: 21,742,418 (GRCm39) V269A probably benign Het
Eif4b T C 15: 101,990,443 (GRCm39) S16P probably benign Het
Eppk1 G A 15: 75,994,526 (GRCm39) T785I probably benign Het
Ezh2 T C 6: 47,531,141 (GRCm39) Y181C possibly damaging Het
Fem1c T C 18: 46,657,561 (GRCm39) Y51C probably damaging Het
Garin5a A T 7: 44,150,405 (GRCm39) E199V probably damaging Het
Glt8d2 T C 10: 82,496,644 (GRCm39) N138S probably damaging Het
Gltp A G 5: 114,808,470 (GRCm39) *210Q probably null Het
Gm10318 T A 10: 77,689,102 (GRCm39) V123D unknown Het
Gm5134 C T 10: 75,821,943 (GRCm39) T259I probably benign Het
Gm6526 T A 14: 43,988,309 (GRCm39) C187S probably benign Het
Golga2 T A 2: 32,189,287 (GRCm39) S273T probably damaging Het
Gulo T C 14: 66,234,348 (GRCm39) E238G probably benign Het
Htt G A 5: 35,012,019 (GRCm39) V1565M probably damaging Het
Itpk1 C T 12: 102,572,347 (GRCm39) probably null Het
Kif20a T C 18: 34,762,228 (GRCm39) C414R possibly damaging Het
Klra3 T C 6: 130,300,602 (GRCm39) I256V probably damaging Het
Klrb1a T C 6: 128,597,239 (GRCm39) T60A probably benign Het
Kmt2d T C 15: 98,741,283 (GRCm39) K4592E unknown Het
Lama3 T C 18: 12,583,460 (GRCm39) C683R probably damaging Het
Lhcgr A G 17: 89,050,446 (GRCm39) I360T probably damaging Het
Lmod2 G A 6: 24,604,182 (GRCm39) V386I possibly damaging Het
Med29 T C 7: 28,086,308 (GRCm39) I167V possibly damaging Het
Mis18bp1 T A 12: 65,205,337 (GRCm39) probably benign Het
Mtus2 A G 5: 148,013,464 (GRCm39) K86E possibly damaging Het
Ndst4 T A 3: 125,232,211 (GRCm39) L260Q probably damaging Het
Neurod2 T C 11: 98,218,444 (GRCm39) Y240C probably damaging Het
Nsd1 T C 13: 55,458,313 (GRCm39) V2142A possibly damaging Het
Or10ag55-ps1 T A 2: 87,115,491 (GRCm39) S286T probably damaging Het
Or10c1 G T 17: 37,522,355 (GRCm39) R130S possibly damaging Het
Or1q1 C T 2: 36,887,290 (GRCm39) A156V probably damaging Het
Or6p1 T A 1: 174,258,641 (GRCm39) S216T probably benign Het
Pcm1 T A 8: 41,728,168 (GRCm39) S542T probably damaging Het
Pde7a C T 3: 19,285,167 (GRCm39) G340D probably benign Het
Phkb T G 8: 86,604,798 (GRCm39) C68G probably null Het
Ppif A G 14: 25,695,921 (GRCm39) T73A possibly damaging Het
Prkacb T C 3: 146,463,475 (GRCm39) E79G probably damaging Het
Ptprz1 G T 6: 22,959,650 (GRCm39) W49L probably damaging Het
Ring1 T C 17: 34,240,420 (GRCm39) E386G possibly damaging Het
Rp1 A G 1: 4,212,833 (GRCm39) probably null Het
Rrm2 T C 12: 24,760,446 (GRCm39) Y177H probably damaging Het
Rsf1 CGGC CGGCGGCGGAGGC 7: 97,229,139 (GRCm39) probably benign Het
Scn4b T A 9: 45,060,639 (GRCm39) I180N probably damaging Het
Slc22a12 A G 19: 6,586,765 (GRCm39) probably null Het
Spa17 C T 9: 37,518,921 (GRCm39) A73T probably damaging Het
Ssh3 C T 19: 4,312,437 (GRCm39) R636Q probably benign Het
Sugp2 C A 8: 70,712,370 (GRCm39) T995K probably damaging Het
Sumo3 T A 10: 77,442,792 (GRCm39) V4E unknown Het
Svil C A 18: 5,062,370 (GRCm39) Q810K probably damaging Het
Tbr1 C T 2: 61,635,077 (GRCm39) P9L probably benign Het
Tmem26 C T 10: 68,576,790 (GRCm39) P78L probably damaging Het
Ttll9 A G 2: 152,818,136 (GRCm39) H42R probably benign Het
Usb1 T C 8: 96,070,685 (GRCm39) Y204H probably damaging Het
Vcpip1 A G 1: 9,815,948 (GRCm39) Y812H probably benign Het
Vmn2r15 T C 5: 109,445,224 (GRCm39) R67G possibly damaging Het
Wdr64 A T 1: 175,622,658 (GRCm39) I802L probably benign Het
Xndc1 T C 7: 101,725,114 (GRCm39) S100P probably damaging Het
Xpot T C 10: 121,447,392 (GRCm39) I128V probably benign Het
Xrn1 C T 9: 95,927,632 (GRCm39) S1472F possibly damaging Het
Zscan12 A T 13: 21,547,938 (GRCm39) Y40F possibly damaging Het
Other mutations in Inpp5d
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00323:Inpp5d APN 1 87,611,537 (GRCm39) missense probably benign 0.00
IGL00329:Inpp5d APN 1 87,595,725 (GRCm39) missense probably benign 0.00
IGL00897:Inpp5d APN 1 87,639,836 (GRCm39) missense probably benign 0.14
IGL01314:Inpp5d APN 1 87,611,472 (GRCm39) nonsense probably null
IGL02145:Inpp5d APN 1 87,642,777 (GRCm39) missense probably damaging 1.00
IGL02422:Inpp5d APN 1 87,635,854 (GRCm39) missense probably damaging 1.00
IGL02538:Inpp5d APN 1 87,623,088 (GRCm39) missense probably null 0.92
IGL02680:Inpp5d APN 1 87,629,205 (GRCm39) missense possibly damaging 0.87
IGL03083:Inpp5d APN 1 87,638,863 (GRCm39) missense probably damaging 1.00
IGL03308:Inpp5d APN 1 87,630,919 (GRCm39) missense probably damaging 1.00
americas UTSW 1 87,642,864 (GRCm39) missense probably damaging 1.00
Apfelsine UTSW 1 87,611,567 (GRCm39) nonsense probably null
Auburn UTSW 1 87,609,402 (GRCm39) splice site probably null
Autumnal UTSW 1 87,619,433 (GRCm39) missense probably damaging 0.97
Gourd UTSW 1 87,625,337 (GRCm39) intron probably benign
lyda UTSW 1 87,611,484 (GRCm39) missense probably damaging 1.00
Mandarin UTSW 1 87,637,348 (GRCm39) missense probably damaging 0.99
naranjo UTSW 1 87,635,933 (GRCm39) critical splice donor site probably null
New_black UTSW 1 87,637,397 (GRCm39) missense probably damaging 1.00
Orange UTSW 1 87,625,268 (GRCm39) critical splice donor site probably null
pantone UTSW 1 87,627,397 (GRCm39) missense probably damaging 1.00
sailing UTSW 1 87,633,686 (GRCm39) missense probably damaging 1.00
Salamander UTSW 1 87,623,102 (GRCm39) missense probably damaging 0.99
Sandstone UTSW 1 87,623,122 (GRCm39) missense probably damaging 1.00
styx UTSW 1 87,597,506 (GRCm39) critical splice donor site probably benign
tangerine UTSW 1 87,633,671 (GRCm39) missense probably damaging 1.00
ulster UTSW 1 87,629,198 (GRCm39) nonsense probably null
R0010:Inpp5d UTSW 1 87,625,268 (GRCm39) critical splice donor site probably null
R0037:Inpp5d UTSW 1 87,635,851 (GRCm39) missense probably damaging 0.99
R0087:Inpp5d UTSW 1 87,642,860 (GRCm39) missense probably damaging 1.00
R0492:Inpp5d UTSW 1 87,625,872 (GRCm39) missense possibly damaging 0.94
R0520:Inpp5d UTSW 1 87,633,642 (GRCm39) splice site probably benign
R0733:Inpp5d UTSW 1 87,595,799 (GRCm39) splice site probably benign
R1464:Inpp5d UTSW 1 87,625,827 (GRCm39) splice site probably benign
R1576:Inpp5d UTSW 1 87,609,280 (GRCm39) missense probably damaging 0.96
R1576:Inpp5d UTSW 1 87,597,407 (GRCm39) missense probably benign 0.16
R1592:Inpp5d UTSW 1 87,593,254 (GRCm39) missense possibly damaging 0.90
R1750:Inpp5d UTSW 1 87,626,803 (GRCm39) missense probably damaging 1.00
R1774:Inpp5d UTSW 1 87,595,611 (GRCm39) missense probably benign 0.30
R1972:Inpp5d UTSW 1 87,604,036 (GRCm39) missense probably benign 0.00
R2024:Inpp5d UTSW 1 87,623,072 (GRCm39) nonsense probably null
R2405:Inpp5d UTSW 1 87,627,451 (GRCm39) missense possibly damaging 0.94
R3412:Inpp5d UTSW 1 87,595,779 (GRCm39) missense possibly damaging 0.93
R3414:Inpp5d UTSW 1 87,595,779 (GRCm39) missense possibly damaging 0.93
R3756:Inpp5d UTSW 1 87,629,130 (GRCm39) splice site probably benign
R4652:Inpp5d UTSW 1 87,593,173 (GRCm39) missense probably benign 0.03
R4676:Inpp5d UTSW 1 87,642,864 (GRCm39) missense probably damaging 1.00
R4834:Inpp5d UTSW 1 87,625,245 (GRCm39) missense possibly damaging 0.52
R5086:Inpp5d UTSW 1 87,633,686 (GRCm39) missense probably damaging 1.00
R5159:Inpp5d UTSW 1 87,604,064 (GRCm39) missense probably damaging 1.00
R5250:Inpp5d UTSW 1 87,637,397 (GRCm39) missense probably damaging 1.00
R5442:Inpp5d UTSW 1 87,645,788 (GRCm39) missense probably benign 0.02
R5875:Inpp5d UTSW 1 87,645,696 (GRCm39) missense possibly damaging 0.47
R6135:Inpp5d UTSW 1 87,548,119 (GRCm39) splice site probably null
R6371:Inpp5d UTSW 1 87,627,397 (GRCm39) missense probably damaging 1.00
R6385:Inpp5d UTSW 1 87,627,397 (GRCm39) missense probably damaging 1.00
R6386:Inpp5d UTSW 1 87,627,397 (GRCm39) missense probably damaging 1.00
R6526:Inpp5d UTSW 1 87,603,972 (GRCm39) start gained probably benign
R6572:Inpp5d UTSW 1 87,623,118 (GRCm39) missense probably damaging 0.99
R6831:Inpp5d UTSW 1 87,629,198 (GRCm39) nonsense probably null
R6853:Inpp5d UTSW 1 87,609,402 (GRCm39) splice site probably null
R6883:Inpp5d UTSW 1 87,627,412 (GRCm39) missense probably damaging 0.98
R7082:Inpp5d UTSW 1 87,623,102 (GRCm39) missense probably damaging 0.99
R7215:Inpp5d UTSW 1 87,628,940 (GRCm39) missense probably benign 0.30
R7418:Inpp5d UTSW 1 87,635,933 (GRCm39) critical splice donor site probably null
R7471:Inpp5d UTSW 1 87,623,122 (GRCm39) missense probably damaging 1.00
R7593:Inpp5d UTSW 1 87,645,500 (GRCm39) missense possibly damaging 0.82
R7716:Inpp5d UTSW 1 87,593,121 (GRCm39) missense probably damaging 0.97
R7781:Inpp5d UTSW 1 87,627,394 (GRCm39) missense probably damaging 1.00
R7808:Inpp5d UTSW 1 87,611,567 (GRCm39) nonsense probably null
R7920:Inpp5d UTSW 1 87,633,671 (GRCm39) missense probably damaging 1.00
R8788:Inpp5d UTSW 1 87,611,484 (GRCm39) missense probably damaging 1.00
R8839:Inpp5d UTSW 1 87,619,433 (GRCm39) missense probably damaging 0.97
R8905:Inpp5d UTSW 1 87,637,348 (GRCm39) missense probably damaging 0.99
R8906:Inpp5d UTSW 1 87,625,337 (GRCm39) intron probably benign
R9517:Inpp5d UTSW 1 87,638,853 (GRCm39) missense probably benign 0.01
R9667:Inpp5d UTSW 1 87,623,128 (GRCm39) missense probably damaging 1.00
Z1176:Inpp5d UTSW 1 87,630,853 (GRCm39) missense probably damaging 1.00
Z1176:Inpp5d UTSW 1 87,597,431 (GRCm39) missense probably benign 0.16
Z1191:Inpp5d UTSW 1 87,611,492 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- CCTCCATCTAGGGCATTTGC -3'
(R):5'- TGGCTCTGAAAGTGGGGTAC -3'

Sequencing Primer
(F):5'- GCCCCCATGATTTTTGTAACTATGTG -3'
(R):5'- GGTACCCCTGAGCAATCCTATAC -3'
Posted On 2022-10-06