Incidental Mutation 'R9725:Vmn1r238'
ID 731005
Institutional Source Beutler Lab
Gene Symbol Vmn1r238
Ensembl Gene ENSMUSG00000091539
Gene Name vomeronasal 1 receptor, 238
Synonyms
MMRRC Submission
Accession Numbers
Essential gene? Probably non essential (E-score: 0.057) question?
Stock # R9725 (G1)
Quality Score 225.009
Status Not validated
Chromosome 18
Chromosomal Location 3122492-3123412 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 3122577 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Phenylalanine to Serine at position 279 (F279S)
Ref Sequence ENSEMBL: ENSMUSP00000129804 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000165255]
AlphaFold E9Q373
Predicted Effect probably benign
Transcript: ENSMUST00000165255
AA Change: F279S

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000129804
Gene: ENSMUSG00000091539
AA Change: F279S

DomainStartEndE-ValueType
Pfam:TAS2R 7 302 5.3e-8 PFAM
Pfam:7tm_1 27 292 8.8e-7 PFAM
Pfam:V1R 34 298 1.9e-33 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.5%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 48 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcc1 T G 16: 14,290,797 (GRCm39) I1469S possibly damaging Het
Aff1 A T 5: 103,994,931 (GRCm39) D1043V probably damaging Het
Ahnak T A 19: 8,991,607 (GRCm39) I4297N probably damaging Het
Ahnak A G 19: 8,981,533 (GRCm39) N939S probably benign Het
Camk2b T C 11: 5,922,634 (GRCm39) N465S possibly damaging Het
Carns1 A G 19: 4,216,548 (GRCm39) S545P probably damaging Het
Cdh23 T A 10: 60,432,561 (GRCm39) Q121L probably benign Het
Cfap221 G T 1: 119,862,352 (GRCm39) Q577K probably benign Het
Dlg1 T G 16: 31,665,683 (GRCm39) L680R probably benign Het
Fahd2a T C 2: 127,278,304 (GRCm39) E301G probably benign Het
Fn3k T A 11: 121,341,191 (GRCm39) L282H probably damaging Het
Fubp1 T A 3: 151,927,823 (GRCm39) I424N probably damaging Het
Gkn1 A G 6: 87,323,289 (GRCm39) S175P probably damaging Het
Gm12695 A G 4: 96,616,466 (GRCm39) S456P probably damaging Het
Kcna5 T C 6: 126,511,844 (GRCm39) T95A probably benign Het
Kcnj13 G T 1: 87,314,737 (GRCm39) T83K probably benign Het
Kif19b G A 5: 140,460,651 (GRCm39) R439H probably benign Het
Klra10 C T 6: 130,252,849 (GRCm39) G142R probably benign Het
Krt14 T C 11: 100,097,902 (GRCm39) N127S probably damaging Het
Layn T C 9: 50,968,775 (GRCm39) M323V probably benign Het
Lrrd1 A G 5: 3,901,147 (GRCm39) D484G probably benign Het
Lrrtm2 A G 18: 35,345,788 (GRCm39) C505R probably damaging Het
Ms4a14 A T 19: 11,280,729 (GRCm39) S610T probably benign Het
Myo5b A G 18: 74,856,841 (GRCm39) N1282S probably benign Het
Naip5 A T 13: 100,358,784 (GRCm39) D817E possibly damaging Het
Ndufs2 A G 1: 171,074,629 (GRCm39) L10P possibly damaging Het
Nxn T C 11: 76,169,362 (GRCm39) D139G probably damaging Het
Or3a1b A G 11: 74,012,612 (GRCm39) T166A probably benign Het
Or5b105 G A 19: 13,080,272 (GRCm39) T132I possibly damaging Het
Or6aa1 A C 7: 86,043,973 (GRCm39) H244Q probably damaging Het
Pcdhb22 G T 18: 37,652,794 (GRCm39) V164F probably damaging Het
Plch2 T C 4: 155,084,992 (GRCm39) T417A probably damaging Het
Prcp G T 7: 92,567,035 (GRCm39) probably null Het
Rasgrp2 A G 19: 6,454,694 (GRCm39) Y178C probably damaging Het
Rasgrp2 A G 19: 6,463,907 (GRCm39) N535S probably benign Het
Rgs20 G T 1: 4,980,793 (GRCm39) Y208* probably null Het
Slc39a10 A G 1: 46,849,223 (GRCm39) C798R probably damaging Het
Slco2b1 A G 7: 99,335,265 (GRCm39) S172P probably benign Het
Styk1 GTCTCTTCATGATT GT 6: 131,278,610 (GRCm39) probably benign Het
Styk1 CTCTTCATGATTTTCTT CTCTT 6: 131,278,612 (GRCm39) probably benign Het
Tmc2 T A 2: 130,089,881 (GRCm39) I622N probably damaging Het
Trav16n A G 14: 53,588,559 (GRCm39) S5G probably benign Het
Tti1 C T 2: 157,849,304 (GRCm39) R645H probably benign Het
Ttll3 A G 6: 113,386,114 (GRCm39) D649G probably damaging Het
Vcam1 C T 3: 115,922,287 (GRCm39) V79I possibly damaging Het
Vmn1r211 T C 13: 23,036,506 (GRCm39) I54V probably benign Het
Vps33a A T 5: 123,669,135 (GRCm39) W589R possibly damaging Het
Zic1 A G 9: 91,246,875 (GRCm39) S66P probably damaging Het
Other mutations in Vmn1r238
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00427:Vmn1r238 APN 18 3,123,243 (GRCm39) missense probably benign 0.01
IGL01385:Vmn1r238 APN 18 3,122,770 (GRCm39) missense possibly damaging 0.83
IGL02716:Vmn1r238 APN 18 3,123,124 (GRCm39) missense probably damaging 1.00
R1219:Vmn1r238 UTSW 18 3,123,135 (GRCm39) missense possibly damaging 0.81
R1568:Vmn1r238 UTSW 18 3,123,358 (GRCm39) missense probably benign 0.00
R1864:Vmn1r238 UTSW 18 3,123,040 (GRCm39) nonsense probably null
R3024:Vmn1r238 UTSW 18 3,123,305 (GRCm39) missense probably benign 0.13
R4291:Vmn1r238 UTSW 18 3,123,214 (GRCm39) nonsense probably null
R4304:Vmn1r238 UTSW 18 3,123,040 (GRCm39) nonsense probably null
R4586:Vmn1r238 UTSW 18 3,123,294 (GRCm39) missense probably damaging 1.00
R4664:Vmn1r238 UTSW 18 3,123,300 (GRCm39) missense probably damaging 0.99
R5123:Vmn1r238 UTSW 18 3,123,243 (GRCm39) missense probably benign
R5430:Vmn1r238 UTSW 18 3,122,521 (GRCm39) missense possibly damaging 0.63
R5834:Vmn1r238 UTSW 18 3,123,168 (GRCm39) missense probably benign
R7186:Vmn1r238 UTSW 18 3,122,661 (GRCm39) missense probably damaging 0.99
R7206:Vmn1r238 UTSW 18 3,122,623 (GRCm39) missense possibly damaging 0.94
R7308:Vmn1r238 UTSW 18 3,122,875 (GRCm39) missense probably benign 0.09
R7346:Vmn1r238 UTSW 18 3,123,151 (GRCm39) missense probably damaging 1.00
R7467:Vmn1r238 UTSW 18 3,123,393 (GRCm39) missense probably benign 0.10
R7571:Vmn1r238 UTSW 18 3,122,721 (GRCm39) missense probably damaging 1.00
R7808:Vmn1r238 UTSW 18 3,123,033 (GRCm39) missense probably benign 0.03
R8085:Vmn1r238 UTSW 18 3,123,151 (GRCm39) missense probably damaging 1.00
R8086:Vmn1r238 UTSW 18 3,123,250 (GRCm39) missense probably damaging 1.00
R8325:Vmn1r238 UTSW 18 3,122,529 (GRCm39) missense probably benign 0.00
R8423:Vmn1r238 UTSW 18 3,123,365 (GRCm39) nonsense probably null
R8747:Vmn1r238 UTSW 18 3,123,232 (GRCm39) missense possibly damaging 0.87
R8930:Vmn1r238 UTSW 18 3,123,127 (GRCm39) missense probably benign 0.03
R8932:Vmn1r238 UTSW 18 3,123,127 (GRCm39) missense probably benign 0.03
R9279:Vmn1r238 UTSW 18 3,122,994 (GRCm39) missense probably damaging 0.99
R9382:Vmn1r238 UTSW 18 3,122,676 (GRCm39) missense probably damaging 0.99
R9644:Vmn1r238 UTSW 18 3,122,635 (GRCm39) missense probably benign 0.10
Z1177:Vmn1r238 UTSW 18 3,122,505 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- GTCACAAAATTTTCTACTGATCATTCC -3'
(R):5'- TCTACAGACATAAGAGACAAGTCAAGC -3'

Sequencing Primer
(F):5'- AGATGCCCTAGCCTCATA -3'
(R):5'- GTCAAGCATAACCACAGTGCTC -3'
Posted On 2022-10-06