Mutagenetix > Incidental Mutation

Incidental Mutation 'R9751:Rtn4rl2'

732496

Institutional Source

Beutler Lab

Gene Symbol

Rtn4rl2

Ensembl Gene

ENSMUSG00000050896

Gene Name

reticulon 4 receptor-like 2

Synonyms

Ngrl3, Ngrh1, Ngr2

MMRRC Submission

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.545) question?

Stock #

R9751 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

84702268-84717054 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 84711039 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Threonine at position 75 (N75T)

Ref Sequence

ENSEMBL: ENSMUSP00000118362 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000054514] [ENSMUST00000151799]

AlphaFold

Q7M6Z0

Predicted Effect

probably damaging
Transcript: ENSMUST00000054514
AA Change: N69T

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000057725
Gene: ENSMUSG00000050896
AA Change: N69T

Domain	Start	End	E-Value	Type
LRRNT	30	64	1.45e-1	SMART
LRR	63	82	2.47e1	SMART
LRR	83	104	6.58e0	SMART
LRR	105	129	2.32e-1	SMART
LRR_TYP	130	153	2.4e-3	SMART
LRR_TYP	154	177	2.71e-2	SMART
LRR_TYP	178	201	1.36e-2	SMART
LRR_TYP	202	225	4.72e-2	SMART
LRR	226	249	1.25e-1	SMART
LRRCT	261	311	3.1e-7	SMART
low complexity region	367	378	N/A	INTRINSIC
low complexity region	405	420	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000151799
AA Change: N75T

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000118362
Gene: ENSMUSG00000050896
AA Change: N75T

Domain	Start	End	E-Value	Type
LRRNT	36	70	1.45e-1	SMART
LRR	69	88	2.47e1	SMART
LRR	89	110	6.58e0	SMART
LRR	111	135	2.32e-1	SMART
LRR_TYP	136	159	2.4e-3	SMART
LRR_TYP	160	183	2.71e-2	SMART
LRR_TYP	184	207	1.36e-2	SMART
LRR_TYP	208	231	4.72e-2	SMART
LRR	232	255	1.25e-1	SMART
LRRCT	267	317	3.1e-7	SMART
low complexity region	373	384	N/A	INTRINSIC
low complexity region	411	426	N/A	INTRINSIC

Coding Region Coverage

1x: 99.9%
3x: 99.8%
10x: 99.5%
20x: 99.0%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for disruptions in this gene display a normal phenotype. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca4	A	G	3: 121,881,126 (GRCm39)	N514D	probably benign	Het
Adgre1	G	A	17: 57,757,101 (GRCm39)	R786H	probably null	Het
Ankrd7	G	A	6: 18,868,024 (GRCm39)	V97I	probably damaging	Het
Bltp1	A	G	3: 37,065,889 (GRCm39)	I54M		Het
Bmper	C	T	9: 23,318,009 (GRCm39)	P543S	possibly damaging	Het
Brwd1	A	T	16: 95,795,015 (GRCm39)	M2233K	possibly damaging	Het
C1s2	G	T	6: 124,602,553 (GRCm39)	P553T	probably damaging	Het
Cachd1	G	A	4: 100,823,438 (GRCm39)	V497I	possibly damaging	Het
Cacng4	A	G	11: 107,626,019 (GRCm39)	S191P	probably damaging	Het
Cd109	C	A	9: 78,605,442 (GRCm39)	T1015K	probably damaging	Het
Clstn2	A	G	9: 97,339,703 (GRCm39)	L756P	probably damaging	Het
Crybg3	A	T	16: 59,377,887 (GRCm39)	D1122E	possibly damaging	Het
Csf2	A	T	11: 54,140,420 (GRCm39)	L6*	probably null	Het
Csnk1g2	T	A	10: 80,473,745 (GRCm39)	Y71N	possibly damaging	Het
Dlg2	C	A	7: 90,564,731 (GRCm39)	H116N	probably benign	Het
Dnah14	C	T	1: 181,619,610 (GRCm39)	S3978L	probably damaging	Het
Dpp8	C	T	9: 64,960,453 (GRCm39)	T328I	probably null	Het
Dync2i1	T	A	12: 116,205,403 (GRCm39)		probably null	Het
Dysf	T	C	6: 84,163,450 (GRCm39)	V1625A	probably damaging	Het
Efcab3	G	A	11: 104,783,911 (GRCm39)	G2754E	probably benign	Het
Egf	C	A	3: 129,548,538 (GRCm39)	V26F	probably damaging	Het
Eif1ad19	T	C	12: 87,740,526 (GRCm39)	N11S	possibly damaging	Het
Fam20a	T	A	11: 109,565,992 (GRCm39)	Y414F	probably damaging	Het
Fsip2	T	C	2: 82,818,241 (GRCm39)	I4658T	probably benign	Het
Hycc1	C	T	5: 24,196,748 (GRCm39)	E47K	probably benign	Het
Igflr1	A	T	7: 30,266,653 (GRCm39)	Q167L	possibly damaging	Het
Krt79	T	G	15: 101,839,196 (GRCm39)	E424D	probably benign	Het
Map3k6	A	G	4: 132,979,168 (GRCm39)		probably null	Het
Mcpt4	A	G	14: 56,297,511 (GRCm39)	I215T	probably damaging	Het
Med13	T	C	11: 86,189,984 (GRCm39)	Y975C	probably damaging	Het
Meioc	T	A	11: 102,566,419 (GRCm39)	Y678*	probably null	Het
Myof	T	C	19: 37,924,818 (GRCm39)	T1190A	probably benign	Het
Nap1l4	A	C	7: 143,088,132 (GRCm39)		probably benign	Het
Ncapg	T	C	5: 45,851,195 (GRCm39)	V796A	probably damaging	Het
Or4c10b	C	T	2: 89,711,956 (GRCm39)	T262I	probably benign	Het
Or4c119	C	T	2: 88,986,782 (GRCm39)	V246M	possibly damaging	Het
Or5d39	T	A	2: 87,979,614 (GRCm39)	I250L	probably benign	Het
Or5d40	T	A	2: 88,015,260 (GRCm39)	V13E	possibly damaging	Het
Or5p68	T	C	7: 107,945,645 (GRCm39)	Y181C	probably benign	Het
Paxbp1	A	G	16: 90,824,188 (GRCm39)	S515P	probably benign	Het
Pip4p1	A	G	14: 51,165,436 (GRCm39)	V257A	probably benign	Het
Plce1	C	T	19: 38,717,414 (GRCm39)	S1401F	probably damaging	Het
Rptor	A	G	11: 119,777,964 (GRCm39)	K1043E	probably benign	Het
Slc35f4	A	G	14: 49,536,291 (GRCm39)	I448T	possibly damaging	Het
Styk1	CTCTTCATGATTTTCTT	CTCTT	6: 131,278,612 (GRCm39)		probably benign	Het
Tas2r115	A	G	6: 132,714,918 (GRCm39)	I11T	possibly damaging	Het
Tbc1d5	A	G	17: 51,181,680 (GRCm39)	V351A	possibly damaging	Het
Trim43b	A	T	9: 88,971,570 (GRCm39)	D195E	probably benign	Het
Trim65	C	A	11: 116,021,564 (GRCm39)	A90S	probably benign	Het
Trip11	C	T	12: 101,850,765 (GRCm39)	V1100I	possibly damaging	Het
Tyrp1	A	G	4: 80,759,012 (GRCm39)	E295G	probably null	Het
Ube2g2	G	A	10: 77,480,307 (GRCm39)	V138I	probably benign	Het

Other mutations in Rtn4rl2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R0626:Rtn4rl2	UTSW	2	84,710,763 (GRCm39)	missense	probably damaging	0.99
R0837:Rtn4rl2	UTSW	2	84,711,036 (GRCm39)	missense	probably damaging	1.00
R1392:Rtn4rl2	UTSW	2	84,710,856 (GRCm39)	missense	probably damaging	1.00
R1392:Rtn4rl2	UTSW	2	84,710,856 (GRCm39)	missense	probably damaging	1.00
R3433:Rtn4rl2	UTSW	2	84,702,444 (GRCm39)	missense	probably damaging	1.00
R3857:Rtn4rl2	UTSW	2	84,710,730 (GRCm39)	critical splice donor site	probably null
R3858:Rtn4rl2	UTSW	2	84,710,730 (GRCm39)	critical splice donor site	probably null
R5044:Rtn4rl2	UTSW	2	84,702,846 (GRCm39)	missense	probably damaging	1.00
R5936:Rtn4rl2	UTSW	2	84,710,775 (GRCm39)	missense	probably damaging	1.00
R6800:Rtn4rl2	UTSW	2	84,710,967 (GRCm39)	missense	probably damaging	1.00
R7755:Rtn4rl2	UTSW	2	84,702,807 (GRCm39)	missense	possibly damaging	0.82
R8375:Rtn4rl2	UTSW	2	84,711,033 (GRCm39)	missense	possibly damaging	0.88
R8416:Rtn4rl2	UTSW	2	84,702,951 (GRCm39)	missense	probably damaging	1.00
R8805:Rtn4rl2	UTSW	2	84,702,558 (GRCm39)	missense	probably damaging	1.00
R9638:Rtn4rl2	UTSW	2	84,710,760 (GRCm39)	missense	probably damaging	1.00
R9749:Rtn4rl2	UTSW	2	84,702,954 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGGTGTAGTGACTGCAGCC -3'
(R):5'- CACTATGCTCTCCCCACAGG -3'

Sequencing Primer
(F):5'- TAGTGACTGCAGCCTCTCCAG -3'
(R):5'- ACAGGTCCTGCCTCAGC -3'

Posted On

2022-11-14