Incidental Mutation 'IGL01302:Pgm1'
| ID |
73278 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Pgm1
|
| Ensembl Gene |
ENSMUSG00000025791 |
| Gene Name |
phosphoglucomutase 1 |
| Synonyms |
Pgm1a, Pgm2, 2610020G18Rik, Pgm-2 |
| Accession Numbers |
|
| Essential gene? |
Possibly essential
(E-score: 0.652)
|
| Stock # |
IGL01302
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
4 |
| Chromosomal Location |
99786648-99844491 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 99786803 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Aspartic acid to Glycine
at position 14
(D14G)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000061227
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000058351]
|
| AlphaFold |
Q9D0F9 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000058351
AA Change: D14G
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000061227
Gene: ENSMUSG00000025791
AA Change: D14G
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:PGM_PMM_I
|
14 |
158 |
1.7e-42 |
PFAM |
|
Pfam:PGM_PMM_II
|
193 |
301 |
3.3e-20 |
PFAM |
|
Pfam:PGM_PMM_III
|
306 |
420 |
1.1e-33 |
PFAM |
|
Pfam:PGM_PMM_IV
|
436 |
543 |
1.1e-8 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000123830
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is an isozyme of phosphoglucomutase (PGM) and belongs to the phosphohexose mutase family. There are several PGM isozymes, which are encoded by different genes and catalyze the transfer of phosphate between the 1 and 6 positions of glucose. In most cell types, this PGM isozyme is predominant, representing about 90% of total PGM activity. In red cells, PGM2 is a major isozyme. This gene is highly polymorphic. Mutations in this gene cause glycogen storage disease type 14. Alternativley spliced transcript variants encoding different isoforms have been identified in this gene.[provided by RefSeq, Mar 2010]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 44 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca13 |
T |
A |
11: 9,349,470 (GRCm39) |
|
probably benign |
Het |
| Abcb5 |
T |
A |
12: 118,881,935 (GRCm39) |
D598V |
probably damaging |
Het |
| Adss1 |
T |
C |
12: 112,601,170 (GRCm39) |
|
probably benign |
Het |
| Akap9 |
T |
A |
5: 4,020,711 (GRCm39) |
S1141T |
probably benign |
Het |
| Avil |
T |
C |
10: 126,852,903 (GRCm39) |
|
probably null |
Het |
| Avl9 |
C |
A |
6: 56,702,075 (GRCm39) |
H77N |
probably damaging |
Het |
| Cacna1e |
A |
G |
1: 154,319,653 (GRCm39) |
V1349A |
probably damaging |
Het |
| Cdc23 |
A |
C |
18: 34,767,697 (GRCm39) |
S483A |
probably benign |
Het |
| Cep192 |
C |
T |
18: 67,991,974 (GRCm39) |
P1951S |
probably benign |
Het |
| Cp |
A |
G |
3: 20,020,531 (GRCm39) |
T175A |
probably damaging |
Het |
| Dubr |
A |
C |
16: 50,552,998 (GRCm39) |
|
noncoding transcript |
Het |
| Eif4g2 |
G |
T |
7: 110,673,920 (GRCm39) |
Q695K |
possibly damaging |
Het |
| Endod1 |
A |
T |
9: 14,268,535 (GRCm39) |
S317T |
possibly damaging |
Het |
| Ep400 |
T |
C |
5: 110,889,914 (GRCm39) |
T450A |
probably benign |
Het |
| Erc1 |
A |
C |
6: 119,699,264 (GRCm39) |
V790G |
probably damaging |
Het |
| Fam222a |
T |
A |
5: 114,732,514 (GRCm39) |
L23Q |
possibly damaging |
Het |
| Fancf |
A |
G |
7: 51,511,035 (GRCm39) |
V323A |
probably benign |
Het |
| Grik2 |
T |
A |
10: 49,120,426 (GRCm39) |
Q621L |
probably damaging |
Het |
| Gsk3b |
G |
T |
16: 38,040,380 (GRCm39) |
R319L |
probably benign |
Het |
| Ikzf1 |
A |
G |
11: 11,718,923 (GRCm39) |
Y297C |
probably damaging |
Het |
| Katnal2 |
T |
C |
18: 77,134,863 (GRCm39) |
|
probably benign |
Het |
| Lrba |
G |
T |
3: 86,202,707 (GRCm39) |
C289F |
probably damaging |
Het |
| Mos |
T |
C |
4: 3,871,815 (GRCm39) |
|
probably benign |
Het |
| Mycn |
T |
C |
12: 12,987,587 (GRCm39) |
D270G |
possibly damaging |
Het |
| Or52e15 |
A |
T |
7: 104,645,928 (GRCm39) |
M61K |
probably damaging |
Het |
| Or6c207 |
T |
A |
10: 129,104,392 (GRCm39) |
I267F |
probably benign |
Het |
| Pclo |
A |
G |
5: 14,726,013 (GRCm39) |
|
probably benign |
Het |
| Pramel7 |
T |
A |
2: 87,321,717 (GRCm39) |
D106V |
possibly damaging |
Het |
| Prdm9 |
G |
T |
17: 15,773,608 (GRCm39) |
H263N |
probably benign |
Het |
| Psd4 |
T |
A |
2: 24,286,799 (GRCm39) |
|
probably null |
Het |
| Ptprc |
G |
A |
1: 138,027,369 (GRCm39) |
T493I |
possibly damaging |
Het |
| Rbbp8 |
T |
A |
18: 11,855,036 (GRCm39) |
S420R |
probably benign |
Het |
| Sap30bp |
A |
G |
11: 115,853,373 (GRCm39) |
T219A |
probably damaging |
Het |
| Shld2 |
C |
T |
14: 33,981,684 (GRCm39) |
V485I |
probably benign |
Het |
| Slc2a7 |
T |
A |
4: 150,242,021 (GRCm39) |
L200Q |
probably damaging |
Het |
| Slc38a6 |
T |
A |
12: 73,335,299 (GRCm39) |
|
probably null |
Het |
| Tatdn2 |
T |
A |
6: 113,680,985 (GRCm39) |
|
probably benign |
Het |
| Thrb |
A |
G |
14: 18,011,056 (GRCm38) |
|
probably benign |
Het |
| Timp4 |
T |
C |
6: 115,223,269 (GRCm39) |
Y218C |
possibly damaging |
Het |
| Tlr5 |
A |
G |
1: 182,802,313 (GRCm39) |
D525G |
probably benign |
Het |
| Usp32 |
G |
T |
11: 84,879,308 (GRCm39) |
T1467N |
probably benign |
Het |
| Vmn2r78 |
A |
G |
7: 86,564,569 (GRCm39) |
I5V |
unknown |
Het |
| Zbtb43 |
T |
C |
2: 33,344,103 (GRCm39) |
H374R |
probably benign |
Het |
| Zfhx4 |
C |
A |
3: 5,308,628 (GRCm39) |
T618K |
probably damaging |
Het |
|
| Other mutations in Pgm1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01468:Pgm1
|
APN |
4 |
99,819,367 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
IGL02013:Pgm1
|
APN |
4 |
99,841,158 (GRCm39) |
splice site |
probably benign |
|
|
IGL02237:Pgm1
|
APN |
4 |
99,820,707 (GRCm39) |
splice site |
probably benign |
|
|
IGL02945:Pgm1
|
APN |
4 |
99,818,731 (GRCm39) |
missense |
probably benign |
|
|
IGL03201:Pgm1
|
APN |
4 |
99,827,236 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL03373:Pgm1
|
APN |
4 |
99,818,741 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0349:Pgm1
|
UTSW |
4 |
99,820,814 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0683:Pgm1
|
UTSW |
4 |
99,818,740 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1650:Pgm1
|
UTSW |
4 |
99,819,276 (GRCm39) |
missense |
probably benign |
0.28 |
|
R1650:Pgm1
|
UTSW |
4 |
99,819,267 (GRCm39) |
missense |
possibly damaging |
0.70 |
|
R1741:Pgm1
|
UTSW |
4 |
99,822,062 (GRCm39) |
splice site |
probably null |
|
|
R1759:Pgm1
|
UTSW |
4 |
99,824,305 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1843:Pgm1
|
UTSW |
4 |
99,818,675 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3111:Pgm1
|
UTSW |
4 |
99,813,222 (GRCm39) |
missense |
probably benign |
|
|
R4115:Pgm1
|
UTSW |
4 |
99,819,348 (GRCm39) |
nonsense |
probably null |
|
|
R4426:Pgm1
|
UTSW |
4 |
99,819,337 (GRCm39) |
missense |
probably benign |
0.04 |
|
R4748:Pgm1
|
UTSW |
4 |
99,839,176 (GRCm39) |
missense |
probably benign |
0.24 |
|
R4910:Pgm1
|
UTSW |
4 |
99,820,724 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4920:Pgm1
|
UTSW |
4 |
99,843,930 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5289:Pgm1
|
UTSW |
4 |
99,824,266 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5764:Pgm1
|
UTSW |
4 |
99,822,043 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6199:Pgm1
|
UTSW |
4 |
99,836,151 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6311:Pgm1
|
UTSW |
4 |
99,827,237 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R6600:Pgm1
|
UTSW |
4 |
99,824,259 (GRCm39) |
nonsense |
probably null |
|
|
R6818:Pgm1
|
UTSW |
4 |
99,820,763 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6892:Pgm1
|
UTSW |
4 |
99,786,905 (GRCm39) |
missense |
probably benign |
|
|
R6984:Pgm1
|
UTSW |
4 |
99,786,851 (GRCm39) |
missense |
probably benign |
0.04 |
|
R7429:Pgm1
|
UTSW |
4 |
99,813,192 (GRCm39) |
start codon destroyed |
probably null |
|
|
R7430:Pgm1
|
UTSW |
4 |
99,813,192 (GRCm39) |
start codon destroyed |
probably null |
|
|
R8017:Pgm1
|
UTSW |
4 |
99,843,875 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8019:Pgm1
|
UTSW |
4 |
99,843,875 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8143:Pgm1
|
UTSW |
4 |
99,824,415 (GRCm39) |
splice site |
probably null |
|
|
R8724:Pgm1
|
UTSW |
4 |
99,786,964 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8893:Pgm1
|
UTSW |
4 |
99,824,297 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9062:Pgm1
|
UTSW |
4 |
99,843,954 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9260:Pgm1
|
UTSW |
4 |
99,827,186 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9513:Pgm1
|
UTSW |
4 |
99,841,242 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9632:Pgm1
|
UTSW |
4 |
99,843,918 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9710:Pgm1
|
UTSW |
4 |
99,843,918 (GRCm39) |
missense |
probably damaging |
1.00 |
|
RF018:Pgm1
|
UTSW |
4 |
99,819,500 (GRCm39) |
splice site |
probably null |
|
|
Z1176:Pgm1
|
UTSW |
4 |
99,836,194 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Posted On |
2013-10-07 |
Incidental Mutation