Mutagenetix > Incidental Mutation

Incidental Mutation 'R9762:Taf5'

733118

Institutional Source

Beutler Lab

Gene Symbol

Taf5

Ensembl Gene

ENSMUSG00000025049

Gene Name

TATA-box binding protein associated factor 5

Synonyms

6330528C20Rik

MMRRC Submission

Accession Numbers

Essential gene?

Probably essential (E-score: 0.969) question?

Stock #

R9762 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

47056187-47071918 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 47059434 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Methionine at position 193 (V193M)

Ref Sequence

ENSEMBL: ENSMUSP00000026027 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026027]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000026027
AA Change: V193M

PolyPhen 2 Score 0.960 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000026027
Gene: ENSMUSG00000025049
AA Change: V193M

Domain	Start	End	E-Value	Type
low complexity region	15	26	N/A	INTRINSIC
low complexity region	29	92	N/A	INTRINSIC
LisH	93	125	6.52e-2	SMART
low complexity region	132	150	N/A	INTRINSIC
Pfam:TFIID_NTD2	206	338	4.5e-55	PFAM
low complexity region	389	417	N/A	INTRINSIC
WD40	460	499	8.36e-2	SMART
WD40	533	572	1.82e-11	SMART
WD40	575	614	1.19e-6	SMART
WD40	617	656	9.08e-12	SMART
WD40	659	698	1.4e-12	SMART
WD40	701	740	2.57e-11	SMART

Coding Region Coverage

1x: 99.9%
3x: 99.8%
10x: 99.4%
20x: 98.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes an integral subunit of TFIID associated with all transcriptionally competent forms of that complex. This subunit interacts strongly with two TFIID subunits that show similarity to histones H3 and H4, and it may participate in forming a nucleosome-like core in the TFIID complex. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2015]

Allele List at MGI

Other mutations in this stock

Total: 81 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ablim1	G	T	19: 57,025,691 (GRCm39)	R851S	probably damaging	Het
Acap2	C	A	16: 30,929,763 (GRCm39)	A407S	probably damaging	Het
Adam26a	A	T	8: 44,021,635 (GRCm39)	S618R	probably benign	Het
Adamtsl5	T	C	10: 80,180,896 (GRCm39)	Y89C	probably damaging	Het
Aebp2	T	A	6: 140,588,021 (GRCm39)	S364T	probably damaging	Het
Ankfy1	A	G	11: 72,621,401 (GRCm39)	E229G	probably benign	Het
Arhgap27	G	T	11: 103,251,511 (GRCm39)	D72E	probably benign	Het
Arhgap33	T	C	7: 30,230,950 (GRCm39)	E191G	probably null	Het
Atp6v0a1	C	T	11: 100,946,427 (GRCm39)	H807Y	possibly damaging	Het
Ccdc113	A	C	8: 96,272,605 (GRCm39)	E237D	probably benign	Het
Cd200r2	T	A	16: 44,729,420 (GRCm39)	I25K	probably benign	Het
Cd300c2	A	G	11: 114,887,775 (GRCm39)	V209A	probably damaging	Het
Cdkn2d	T	A	9: 21,200,383 (GRCm39)	E129D	probably benign	Het
Cfap251	A	G	5: 123,460,533 (GRCm39)	Y1165C	probably damaging	Het
Chd9	A	T	8: 91,712,741 (GRCm39)	N855Y	unknown	Het
Cntn3	A	G	6: 102,254,196 (GRCm39)	C249R	probably damaging	Het
Col12a1	T	C	9: 79,527,266 (GRCm39)	E2688G	possibly damaging	Het
Copb2	C	T	9: 98,464,901 (GRCm39)	T612I	probably benign	Het
Cplx1	A	T	5: 108,673,378 (GRCm39)	D29E	possibly damaging	Het
Cracd	A	G	5: 77,006,555 (GRCm39)	K972R	unknown	Het
Cstf3	A	T	2: 104,494,684 (GRCm39)	R645*	probably null	Het
Ctdp1	A	T	18: 80,492,550 (GRCm39)	Y648*	probably null	Het
Daam1	T	A	12: 71,990,855 (GRCm39)	D156E	unknown	Het
Dbn1	G	A	13: 55,622,824 (GRCm39)	P599L	probably damaging	Het
Diaph1	C	A	18: 37,987,589 (GRCm39)	V1056F	probably damaging	Het
Dzip3	A	T	16: 48,748,707 (GRCm39)	D870E	probably damaging	Het
Efcab12	T	C	6: 115,800,331 (GRCm39)	T231A	possibly damaging	Het
Efl1	A	C	7: 82,412,596 (GRCm39)	D995A	probably benign	Het
Fam186a	T	C	15: 99,842,393 (GRCm39)	T1284A	possibly damaging	Het
Fbxo33	T	C	12: 59,251,708 (GRCm39)	E269G	probably benign	Het
Foxj3	T	A	4: 119,483,540 (GRCm39)	M604K	unknown	Het
Gabra4	A	G	5: 71,814,463 (GRCm39)	S86P	unknown	Het
Gnas	G	A	2: 174,140,639 (GRCm39)	W269*	probably null	Het
Gpc6	T	G	14: 118,202,258 (GRCm39)	N489K	probably damaging	Het
Gprin3	T	C	6: 59,331,236 (GRCm39)	K357R	possibly damaging	Het
Grip1	G	T	10: 119,811,906 (GRCm39)	A286S	possibly damaging	Het
Grm4	A	T	17: 27,721,688 (GRCm39)	V151E	probably damaging	Het
Gucy1b1	A	T	3: 81,942,065 (GRCm39)	S565T	possibly damaging	Het
Hace1	T	C	10: 45,525,014 (GRCm39)	V260A	probably benign	Het
Hepacam2	A	G	6: 3,486,940 (GRCm39)	I139T	probably damaging	Het
Hspa4l	T	C	3: 40,727,057 (GRCm39)	I486T	probably benign	Het
Igkv8-19	T	C	6: 70,317,866 (GRCm39)	Y120C	probably damaging	Het
Iglv2	C	T	16: 19,079,548 (GRCm39)		probably benign	Het
Igsf10	A	T	3: 59,237,106 (GRCm39)	L1025H	probably damaging	Het
Itpkb	A	G	1: 180,161,752 (GRCm39)	N626S	probably benign	Het
Jarid2	C	T	13: 45,068,253 (GRCm39)	R1092W	possibly damaging	Het
Klc3	C	T	7: 19,132,023 (GRCm39)	W118*	probably null	Het
Klhl25	C	T	7: 75,516,741 (GRCm39)	T549I	probably damaging	Het
Krtap6-2	T	A	16: 89,216,763 (GRCm39)	Y68F	unknown	Het
Mtcl1	T	C	17: 66,673,347 (GRCm39)	N1121D	probably benign	Het
Ncbp3	A	G	11: 72,961,668 (GRCm39)	K314R	probably benign	Het
Nop2	T	C	6: 125,121,272 (GRCm39)	W685R	probably benign	Het
Orc1	T	A	4: 108,447,874 (GRCm39)	D40E	probably benign	Het
Pappa2	G	T	1: 158,684,948 (GRCm39)	N730K	probably damaging	Het
Parpbp	A	G	10: 87,960,815 (GRCm39)	S224P	possibly damaging	Het
Pdgfc	A	G	3: 80,944,792 (GRCm39)	R17G	probably benign	Het
Pfpl	G	C	19: 12,406,297 (GRCm39)	E183Q	probably damaging	Het
Pik3r6	T	A	11: 68,424,358 (GRCm39)	L321*	probably null	Het
Pnp2	T	C	14: 51,197,006 (GRCm39)	W31R	probably damaging	Het
Prr12	T	C	7: 44,696,954 (GRCm39)	Y987C	unknown	Het
Prr27	C	A	5: 87,990,994 (GRCm39)	P202Q	probably benign	Het
Prss23	T	C	7: 89,159,683 (GRCm39)	I129V	probably damaging	Het
Rhno1	T	C	6: 128,336,119 (GRCm39)	T39A	probably damaging	Het
Rps2	A	T	17: 24,940,810 (GRCm39)	R279*	probably null	Het
Ski	T	C	4: 155,244,344 (GRCm39)	K427R	probably damaging	Het
Slc23a3	ATT	ATTT	1: 75,109,925 (GRCm39)		probably null	Het
Slc26a7	C	T	4: 14,546,372 (GRCm39)	G319D	probably damaging	Het
Slc7a6os	A	G	8: 106,937,523 (GRCm39)	V8A	probably damaging	Het
Smim8	A	C	4: 34,771,265 (GRCm39)	I43S	probably damaging	Het
Sox5	T	C	6: 143,819,842 (GRCm39)	K400R	probably damaging	Het
Tab1	G	A	15: 80,032,943 (GRCm39)	V76M	probably damaging	Het
Taf2	A	C	15: 54,894,440 (GRCm39)		probably null	Het
Tm2d1	A	T	4: 98,246,261 (GRCm39)	S180R	probably damaging	Het
Ttc12	A	G	9: 49,368,166 (GRCm39)	F287S	probably damaging	Het
Ubqln4	G	A	3: 88,473,185 (GRCm39)		probably null	Het
Ubr3	T	C	2: 69,839,497 (GRCm39)	V1537A	probably benign	Het
Ugt8a	A	G	3: 125,708,900 (GRCm39)	L70P	probably damaging	Het
Vps26a	A	T	10: 62,316,433 (GRCm39)	N51K	probably benign	Het
Xkr5	T	A	8: 18,990,749 (GRCm39)	T173S	probably benign	Het
Zfp354c	A	G	11: 50,706,239 (GRCm39)	C279R	probably damaging	Het
Zfp65	T	A	13: 67,856,478 (GRCm39)	H267L	probably damaging	Het

Other mutations in Taf5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00672:Taf5	APN	19	47,070,740 (GRCm39)	missense	probably damaging	1.00
IGL01115:Taf5	APN	19	47,063,521 (GRCm39)	missense	probably benign	0.01
IGL02168:Taf5	APN	19	47,070,917 (GRCm39)	missense	probably damaging	0.98
IGL02638:Taf5	APN	19	47,056,649 (GRCm39)	missense	probably benign	0.00
IGL02689:Taf5	APN	19	47,065,704 (GRCm39)	splice site	probably benign
R0008:Taf5	UTSW	19	47,064,301 (GRCm39)	missense	possibly damaging	0.94
R0008:Taf5	UTSW	19	47,064,301 (GRCm39)	missense	possibly damaging	0.94
R0220:Taf5	UTSW	19	47,068,999 (GRCm39)	missense	probably damaging	1.00
R0685:Taf5	UTSW	19	47,063,293 (GRCm39)	missense	probably benign	0.10
R1518:Taf5	UTSW	19	47,070,285 (GRCm39)	missense	probably damaging	1.00
R2329:Taf5	UTSW	19	47,063,563 (GRCm39)	missense	probably benign	0.07
R3431:Taf5	UTSW	19	47,064,272 (GRCm39)	missense	probably damaging	1.00
R3432:Taf5	UTSW	19	47,064,272 (GRCm39)	missense	probably damaging	1.00
R3689:Taf5	UTSW	19	47,067,224 (GRCm39)	missense	probably damaging	0.99
R4411:Taf5	UTSW	19	47,059,453 (GRCm39)	missense	probably damaging	1.00
R4413:Taf5	UTSW	19	47,059,453 (GRCm39)	missense	probably damaging	1.00
R4676:Taf5	UTSW	19	47,063,409 (GRCm39)	missense	probably damaging	1.00
R5370:Taf5	UTSW	19	47,064,203 (GRCm39)	missense	probably damaging	0.99
R5875:Taf5	UTSW	19	47,064,549 (GRCm39)	missense	probably damaging	1.00
R5883:Taf5	UTSW	19	47,056,228 (GRCm39)	missense	unknown
R5937:Taf5	UTSW	19	47,070,334 (GRCm39)	missense	probably damaging	1.00
R6835:Taf5	UTSW	19	47,065,776 (GRCm39)	missense	possibly damaging	0.94
R7007:Taf5	UTSW	19	47,059,650 (GRCm39)	missense	probably damaging	1.00
R8198:Taf5	UTSW	19	47,064,212 (GRCm39)	missense	probably damaging	0.97
R9151:Taf5	UTSW	19	47,063,370 (GRCm39)	missense	probably damaging	0.98
R9500:Taf5	UTSW	19	47,065,771 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AAAAGGTTTTGTGACTGTGAGC -3'
(R):5'- TCAGGTTCATGCTGCCCAAG -3'

Sequencing Primer
(F):5'- CTGAGATAGGTCCTGGAAACCTC -3'
(R):5'- AAGGCACCTGTCCTTCTGATTTAC -3'

Posted On

2022-11-14