Mutagenetix > Incidental Mutation

Incidental Mutation 'R9784:Trappc12'

734244

Institutional Source

Beutler Lab

Gene Symbol

Trappc12

Ensembl Gene

ENSMUSG00000020628

Gene Name

trafficking protein particle complex 12

Synonyms

CGI-87, Ttc15, D930014A20Rik

MMRRC Submission

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.366) question?

Stock #

R9784 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

28740627-28800471 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 28797457 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 25 (I25T)

Ref Sequence

ENSEMBL: ENSMUSP00000020954 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020954] [ENSMUST00000035657] [ENSMUST00000168129] [ENSMUST00000170994] [ENSMUST00000221555] [ENSMUST00000221877] [ENSMUST00000222407]

AlphaFold

Q8K2L8

Predicted Effect

probably benign
Transcript: ENSMUST00000020954
AA Change: I25T

PolyPhen 2 Score 0.332 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000020954
Gene: ENSMUSG00000020628
AA Change: I25T

Domain	Start	End	E-Value	Type
low complexity region	7	23	N/A	INTRINSIC
low complexity region	183	196	N/A	INTRINSIC
low complexity region	232	245	N/A	INTRINSIC
low complexity region	271	282	N/A	INTRINSIC
TPR	607	640	3.67e-3	SMART
TPR	642	675	1.44e1	SMART
TPR	682	715	3.37e-2	SMART
TPR	716	749	2.99e1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000035657

SMART Domains

Protein: ENSMUSP00000038845
Gene: ENSMUSG00000036613

Domain	Start	End	E-Value	Type
low complexity region	43	56	N/A	INTRINSIC
Blast:WD40	57	100	1e-18	BLAST
WD40	122	163	6.39e0	SMART
WD40	172	213	2.29e1	SMART
WD40	216	257	6.38e-7	SMART
WD40	261	301	4.38e-5	SMART
WD40	335	375	1.2e-2	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000168129
AA Change: I25T

PolyPhen 2 Score 0.332 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000127752
Gene: ENSMUSG00000020628
AA Change: I25T

Domain	Start	End	E-Value	Type
low complexity region	7	23	N/A	INTRINSIC
low complexity region	183	196	N/A	INTRINSIC
low complexity region	232	245	N/A	INTRINSIC
low complexity region	271	282	N/A	INTRINSIC
TPR	607	640	3.67e-3	SMART
TPR	642	675	1.44e1	SMART
TPR	682	715	3.37e-2	SMART
TPR	716	749	2.99e1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000170994
AA Change: I25T

PolyPhen 2 Score 0.361 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000132009
Gene: ENSMUSG00000020628
AA Change: I25T

Domain	Start	End	E-Value	Type
low complexity region	7	23	N/A	INTRINSIC
low complexity region	183	196	N/A	INTRINSIC
low complexity region	232	245	N/A	INTRINSIC
low complexity region	271	282	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000221555

Predicted Effect

probably benign
Transcript: ENSMUST00000221877

Predicted Effect

probably benign
Transcript: ENSMUST00000222407

Coding Region Coverage

1x: 99.9%
3x: 99.8%
10x: 99.3%
20x: 98.0%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 82 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2900026A02Rik	G	A	5: 113,338,527 (GRCm39)	P495L	possibly damaging	Het
Acly	C	T	11: 100,389,112 (GRCm39)	A557T	probably benign	Het
Adgrl4	A	T	3: 151,214,948 (GRCm39)	T446S	probably damaging	Het
AK157302	A	G	13: 21,679,768 (GRCm39)	E98G	probably damaging	Het
Akap6	A	T	12: 53,187,853 (GRCm39)	T1756S	probably damaging	Het
Aldh1l1	A	G	6: 90,541,424 (GRCm39)	T273A	probably benign	Het
Aldh1l2	T	A	10: 83,342,614 (GRCm39)		probably null	Het
Alox12	T	C	11: 70,143,665 (GRCm39)	E201G	possibly damaging	Het
Arhgef16	A	G	4: 154,371,422 (GRCm39)	V257A	probably damaging	Het
Asxl3	C	T	18: 22,650,311 (GRCm39)	L767F	probably benign	Het
Atxn7l2	T	C	3: 108,110,565 (GRCm39)	K692R	probably null	Het
Btbd2	T	C	10: 80,484,481 (GRCm39)	D145G	probably damaging	Het
Cacna1b	A	T	2: 24,651,801 (GRCm39)	M126K	possibly damaging	Het
Cacna2d2	T	A	9: 107,404,346 (GRCm39)	C1081S	probably benign	Het
Cass4	T	C	2: 172,269,753 (GRCm39)	S612P	probably benign	Het
Cd209d	A	G	8: 3,926,337 (GRCm39)	S123P	probably damaging	Het
Cep112	T	C	11: 108,461,217 (GRCm39)	S665P	probably damaging	Het
Cnp	C	T	11: 100,467,437 (GRCm39)	R127W	probably damaging	Het
Col9a2	A	T	4: 120,898,226 (GRCm39)	D46V	unknown	Het
Cyp1a2	T	A	9: 57,587,562 (GRCm39)	N336I	probably benign	Het
Cyp2c37	A	G	19: 39,988,943 (GRCm39)	T301A	possibly damaging	Het
Dhtkd1	T	A	2: 5,935,622 (GRCm39)	E163D	probably benign	Het
Dido1	A	T	2: 180,325,354 (GRCm39)	F611L	probably benign	Het
Dnah9	T	A	11: 65,975,960 (GRCm39)	N1363I	probably damaging	Het
Drg2	A	G	11: 60,358,548 (GRCm39)	K331R	probably benign	Het
Fam171b	T	A	2: 83,690,787 (GRCm39)	I250K	probably damaging	Het
Fem1al	A	T	11: 29,775,253 (GRCm39)	V68E	probably damaging	Het
Fut8	T	A	12: 77,459,613 (GRCm39)	I242N	probably damaging	Het
Glyat	T	C	19: 12,628,844 (GRCm39)	V247A	probably benign	Het
Gucy2e	T	C	11: 69,123,516 (GRCm39)	N461S	probably benign	Het
Hif3a	T	A	7: 16,771,076 (GRCm39)	H627L	probably benign	Het
Ighv8-5	T	A	12: 115,031,228 (GRCm39)	T104S	probably benign	Het
Ighv8-9	C	T	12: 115,431,994 (GRCm39)	V106M	probably benign	Het
Inpp5f	A	C	7: 128,278,515 (GRCm39)	D435A	possibly damaging	Het
Katna1	G	C	10: 7,638,590 (GRCm39)	E440D	probably null	Het
Kmt2c	T	C	5: 25,549,959 (GRCm39)	R1341G	probably damaging	Het
Krt14	C	T	11: 100,097,966 (GRCm39)	G106S	unknown	Het
Krt39	A	G	11: 99,409,188 (GRCm39)	C238R	possibly damaging	Het
Mak	C	T	13: 41,202,836 (GRCm39)	S204N	possibly damaging	Het
Map3k5	A	G	10: 19,810,812 (GRCm39)	Y154C	probably damaging	Het
Mgam	A	G	6: 40,736,024 (GRCm39)	Y841C	probably damaging	Het
Mgst1	A	T	6: 138,124,799 (GRCm39)	R38W	probably damaging	Het
Midn	A	G	10: 79,992,247 (GRCm39)	E433G	probably damaging	Het
Muc2	T	A	7: 141,280,785 (GRCm39)	C380*	probably null	Het
Nans	G	T	4: 46,499,129 (GRCm39)	K145N	possibly damaging	Het
Nbeal1	G	A	1: 60,299,741 (GRCm39)	W1359*	probably null	Het
Neo1	T	A	9: 58,889,503 (GRCm39)	E256V	probably benign	Het
Nkd1	C	A	8: 89,318,330 (GRCm39)	D322E	probably damaging	Het
Olfm4	T	C	14: 80,249,348 (GRCm39)	V155A	probably damaging	Het
Opa1	C	A	16: 29,437,029 (GRCm39)	S646*	probably null	Het
Or1p4-ps1	G	T	11: 74,208,709 (GRCm39)	C286F	unknown	Het
Or4f7	A	G	2: 111,644,604 (GRCm39)	S156P	probably damaging	Het
Or51ab3	T	A	7: 103,201,266 (GRCm39)	H91Q	probably benign	Het
Or52z1	T	A	7: 103,436,732 (GRCm39)	I251F	probably benign	Het
Or5b107	T	A	19: 13,142,813 (GRCm39)	L145Q	probably damaging	Het
Or5b12b	G	A	19: 12,861,874 (GRCm39)	V210M	probably benign	Het
Or7g29	A	T	9: 19,287,116 (GRCm39)	D20E	probably damaging	Het
Pcdh15	A	T	10: 74,467,212 (GRCm39)	H1743L	probably benign	Het
Ppp1r13b	T	C	12: 111,810,119 (GRCm39)	T230A	probably benign	Het
Ptf1a	G	T	2: 19,451,381 (GRCm39)	R237L	probably benign	Het
Ripk4	G	A	16: 97,549,306 (GRCm39)	P250L	possibly damaging	Het
Ropn1l	T	C	15: 31,453,649 (GRCm39)	H14R		Het
Setdb1	T	C	3: 95,233,173 (GRCm39)	S1122G	probably damaging	Het
Shank1	G	A	7: 43,962,342 (GRCm39)	S71N	unknown	Het
Slc22a18	T	A	7: 143,046,678 (GRCm39)	M274K	probably benign	Het
Spink5	T	G	18: 44,119,490 (GRCm39)	F267C	probably damaging	Het
Stau1	T	C	2: 166,791,695 (GRCm39)	M481V	probably benign	Het
Stk39	C	T	2: 68,198,775 (GRCm39)	G281E	probably damaging	Het
Stt3a	A	T	9: 36,670,079 (GRCm39)	L119Q	probably damaging	Het
Stx18	C	T	5: 38,196,635 (GRCm39)		probably benign	Het
Tgfbr3	G	T	5: 107,297,799 (GRCm39)	N200K	probably benign	Het
Timm8b	A	G	9: 50,516,273 (GRCm39)	E42G	probably benign	Het
Togaram1	T	A	12: 65,014,168 (GRCm39)	L473*	probably null	Het
Trim33	T	C	3: 103,244,823 (GRCm39)	S737P	possibly damaging	Het
Trmt1	A	C	8: 85,424,330 (GRCm39)	H455P	probably damaging	Het
Trpc1	C	T	9: 95,599,646 (GRCm39)	R471H	possibly damaging	Het
Ttll2	T	A	17: 7,618,707 (GRCm39)	T407S	probably benign	Het
Unc45b	T	A	11: 82,816,986 (GRCm39)	N475K	probably damaging	Het
Usp48	T	A	4: 137,321,812 (GRCm39)	I40N	probably benign	Het
Wdr7	T	G	18: 64,037,236 (GRCm39)	V1220G	probably damaging	Het
Zfp830	C	T	11: 82,655,805 (GRCm39)	T203I	possibly damaging	Het
Zfp955a	T	A	17: 33,461,149 (GRCm39)	I328F	probably damaging	Het

Other mutations in Trappc12

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00418:Trappc12	APN	12	28,787,835 (GRCm39)	missense	probably damaging	0.99
IGL01018:Trappc12	APN	12	28,741,853 (GRCm39)	splice site	probably benign
IGL01295:Trappc12	APN	12	28,796,761 (GRCm39)	missense	probably damaging	1.00
IGL01365:Trappc12	APN	12	28,797,401 (GRCm39)	missense	probably damaging	1.00
IGL01490:Trappc12	APN	12	28,796,914 (GRCm39)	missense	probably damaging	1.00
IGL01975:Trappc12	APN	12	28,742,491 (GRCm39)	critical splice donor site	probably null
IGL02851:Trappc12	APN	12	28,741,405 (GRCm39)	missense	probably damaging	0.98
IGL02885:Trappc12	APN	12	28,797,013 (GRCm39)	missense	probably benign
IGL03163:Trappc12	APN	12	28,796,653 (GRCm39)	missense	probably damaging	1.00
R0102:Trappc12	UTSW	12	28,796,751 (GRCm39)	missense	probably damaging	1.00
R0102:Trappc12	UTSW	12	28,796,751 (GRCm39)	missense	probably damaging	1.00
R0330:Trappc12	UTSW	12	28,797,259 (GRCm39)	missense	probably benign	0.00
R0517:Trappc12	UTSW	12	28,747,133 (GRCm39)	splice site	probably benign
R0837:Trappc12	UTSW	12	28,753,596 (GRCm39)	missense	possibly damaging	0.92
R1439:Trappc12	UTSW	12	28,797,160 (GRCm39)	missense	possibly damaging	0.96
R1477:Trappc12	UTSW	12	28,787,751 (GRCm39)	missense	probably benign	0.25
R1651:Trappc12	UTSW	12	28,741,776 (GRCm39)	missense	probably benign	0.32
R1899:Trappc12	UTSW	12	28,796,984 (GRCm39)	missense	probably damaging	0.97
R1900:Trappc12	UTSW	12	28,796,984 (GRCm39)	missense	probably damaging	0.97
R2133:Trappc12	UTSW	12	28,796,597 (GRCm39)	missense	probably benign	0.00
R2174:Trappc12	UTSW	12	28,797,380 (GRCm39)	missense	possibly damaging	0.94
R4449:Trappc12	UTSW	12	28,797,234 (GRCm39)	missense	probably benign	0.05
R5031:Trappc12	UTSW	12	28,742,512 (GRCm39)	missense	possibly damaging	0.86
R5209:Trappc12	UTSW	12	28,787,793 (GRCm39)	missense	probably benign	0.03
R5220:Trappc12	UTSW	12	28,796,696 (GRCm39)	missense	probably damaging	0.97
R5458:Trappc12	UTSW	12	28,796,389 (GRCm39)	missense	probably damaging	0.98
R5471:Trappc12	UTSW	12	28,741,499 (GRCm39)	missense	probably damaging	1.00
R5482:Trappc12	UTSW	12	28,741,324 (GRCm39)	missense	probably damaging	0.97
R5808:Trappc12	UTSW	12	28,796,863 (GRCm39)	missense	probably damaging	1.00
R5916:Trappc12	UTSW	12	28,741,513 (GRCm39)	missense	probably damaging	1.00
R5996:Trappc12	UTSW	12	28,797,113 (GRCm39)	missense	possibly damaging	0.83
R6378:Trappc12	UTSW	12	28,797,082 (GRCm39)	missense	probably damaging	0.97
R7669:Trappc12	UTSW	12	28,761,957 (GRCm39)	missense	probably benign	0.30
R9233:Trappc12	UTSW	12	28,772,414 (GRCm39)	missense	possibly damaging	0.88
R9323:Trappc12	UTSW	12	28,742,491 (GRCm39)	critical splice donor site	probably null
R9361:Trappc12	UTSW	12	28,796,417 (GRCm39)	missense	probably damaging	0.99
R9550:Trappc12	UTSW	12	28,761,985 (GRCm39)	critical splice acceptor site	probably null

Predicted Primers

PCR Primer
(F):5'- CCTCGCTGTTGTTAGGAGAG -3'
(R):5'- CTATGTCTCAGAACCGCAGAG -3'

Sequencing Primer
(F):5'- AGTCGGAGATGAGCACACTTTCC -3'
(R):5'- GAGTTCAAGTCCACGCACGTTATG -3'

Posted On

2022-11-14